Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033892.1

Orthogroup ID

OG0023145

Physical Location & Seq

Genomic Coordinates Forward (+)

38 .. 857

Gene Structure 820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033892.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atgaggggatacttgactgacaaagcagatgtgtatagttttggtattgttgccttagaaatagtcagtggaaagagcaacacaaattacagaccaaaggaggagtacgtgtatctccttgacggggcctatgtcctacaagagcaaggaaatatgttagaacttgtggatccagatcttggttcaaactactccaaagaagaggcgatgacaatgcttaacttggcgcttttatgcaccaatccatctcccactctcagaccacccatgtcatctgtcgtaagcatgcttgaaggtaaaagtccgattcaggcaccgttaatcaagcgcgacacgatggagcaggatgtgaggttcaaagcctttgagagactatcacaagacagccaaacacatgtttcaactttctcgcaagatagtcatgtaagaggaacatcaatggaaggtccatggattgattcttccgtttctctcgctagtaaaaatgagtcccatgaacattcttcaacaagcacgcaactcaaggatctgtatgatgtaaacttacagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

183

Amino Acids

20.45

Weight (kDa)

4.86

Isoelectric Point (pI)

38.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023145)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0033892.1_g000001
rosa_samantha	Rh5BG207800 Rh5CG231200 Rh5DG212000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	313
AccB7I	CCANNNNNTGG	1 cut(s)	179
AccII	CGCG	1 cut(s)	330
AclWI	GGATC	3 cut(s)	164, 177, 534
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	2 cut(s)	124, 179
AflIII	ACRYGT	2 cut(s)	108, 394
AgsI	TTSAA	5 cut(s)	186, 293, 358, 402, 507
AloI	GAACNNNNNNTCC	2 cut(s)	338, 370
Alw26I	GTCTC	1 cut(s)	364
AlwI	GGATC	3 cut(s)	164, 177, 534
AoxI	GGCC	1 cut(s)	126
AspLEI	GCGC	2 cut(s)	229, 330
AspS9I	GGNCC	2 cut(s)	126, 446
AvaII	GGWCC	1 cut(s)	446
BamHI	GGATCC	1 cut(s)	169
BanI	GGYRCC	1 cut(s)	313
BccI	CCATC	2 cut(s)	253, 331
BcgI	CGANNNNNNTGC	2 cut(s)	196, 230
BcoDI	GTCTC	1 cut(s)	364
BfaI	CTAG	1 cut(s)	477
BfoI	RGCGCY	1 cut(s)	230
BglII	AGATCT	1 cut(s)	175
Bme18I	GGWCC	1 cut(s)	446
BmgT120I	GGNCC	2 cut(s)	126, 446
BmiI	GGNNCC	3 cut(s)	127, 171, 315
BpuEI	CTTGAG	1 cut(s)	506
BsaAI	YACGTR	1 cut(s)	109
BsaBI	GATNNNNATC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	449
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 179
Bse8I	GATNNNNATC	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	449
BseGI	GGATG	1 cut(s)	352
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	2 cut(s)	124, 179
BseMII	CTCAG	1 cut(s)	271
BseRI	GAGGAG	1 cut(s)	116
Bsh1236I	CGCG	1 cut(s)	330
BshFI	GGCC	1 cut(s)	128
BshNI	GGYRCC	1 cut(s)	313
BslFI	GGGAC	1 cut(s)	475
BslI	CCNNNNNNNGG	2 cut(s)	124, 179
BsmAI	GTCTC	1 cut(s)	364
BsmFI	GGGAC	1 cut(s)	475
BsnI	GGCC	1 cut(s)	128
Bsp143I	GATC	3 cut(s)	169, 175, 526
Bsp19I	CCATGG	1 cut(s)	449
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	270
BspFNI	CGCG	1 cut(s)	330
BspLI	GGNNCC	3 cut(s)	127, 171, 315
BspPI	GGATC	3 cut(s)	164, 177, 534
BspT107I	GGYRCC	1 cut(s)	313
BssECI	CCNNGG	1 cut(s)	449
BssMI	GATC	3 cut(s)	169, 175, 526
BssT1I	CCWWGG	1 cut(s)	449
Bst4CI	ACNGT	2 cut(s)	318, 549
Bst6I	CTCTTC	1 cut(s)	195
BstBAI	YACGTR	1 cut(s)	109
BstC8I	GCNNGC	2 cut(s)	287, 515
BstDEI	CTNAG	2 cut(s)	55, 257
BstDSI	CCRYGG	1 cut(s)	449
BstF5I	GGATG	1 cut(s)	352
BstFNI	CGCG	1 cut(s)	330
BstH2I	RGCGCY	1 cut(s)	230
BstHHI	GCGC	2 cut(s)	229, 330
BstKTI	GATC	3 cut(s)	172, 178, 529
BstMAI	GTCTC	1 cut(s)	364
BstMBI	GATC	3 cut(s)	169, 175, 526
BstNSI	RCATGY	2 cut(s)	289, 398
BstUI	CGCG	1 cut(s)	330
BstX2I	RGATCY	3 cut(s)	169, 175, 526
BstYI	RGATCY	3 cut(s)	169, 175, 526
BsuRI	GGCC	1 cut(s)	128
BtgI	CCRYGG	1 cut(s)	449
BtgZI	GCGATG	1 cut(s)	221
BtsCI	GGATG	1 cut(s)	352
BtsIMutI	CAGTG	1 cut(s)	73
Cac8I	GCNNGC	2 cut(s)	287, 515
CfoI	GCGC	2 cut(s)	229, 330
Cfr13I	GGNCC	2 cut(s)	126, 446
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	6 cut(s)	268, 286, 395, 422, 450, 494
CviJI	RGCY	3 cut(s)	128, 362, 387
CviKI_1	RGCY	3 cut(s)	128, 362, 387
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	2 cut(s)	55, 257
DpnI	GATC	3 cut(s)	171, 177, 528
DpnII	GATC	3 cut(s)	169, 175, 526
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco130I	CCWWGG	1 cut(s)	449
Eco47I	GGWCC	1 cut(s)	446
EcoO109I	RGGNCCY	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	449
ErhI	CCWWGG	1 cut(s)	449
FaeI	CATG	6 cut(s)	271, 289, 398, 425, 453, 497
FaqI	GGGAC	1 cut(s)	475
FatI	CATG	6 cut(s)	267, 285, 394, 421, 449, 493
FokI	GGATG	1 cut(s)	359
FspBI	CTAG	1 cut(s)	477
GlaI	GCGC	2 cut(s)	228, 329
HaeII	RGCGCY	1 cut(s)	230
HaeIII	GGCC	1 cut(s)	128
HhaI	GCGC	2 cut(s)	229, 330
Hin1II	CATG	6 cut(s)	271, 289, 398, 425, 453, 497
Hin6I	GCGC	2 cut(s)	227, 328
HinP1I	GCGC	2 cut(s)	227, 328
HinfI	GANTC	3 cut(s)	307, 458, 488
Hpy166II	GTNNAC	1 cut(s)	541
Hpy188I	TCNGA	2 cut(s)	260, 306
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	1 cut(s)	541
HpyAV	CCTTC	2 cut(s)	287, 437
HpyCH4III	ACNGT	2 cut(s)	318, 549
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	1 cut(s)	237
HpyF3I	CTNAG	2 cut(s)	55, 257
HpySE526I	ACGT	1 cut(s)	108
Hsp92II	CATG	6 cut(s)	271, 289, 398, 425, 453, 497
HspAI	GCGC	2 cut(s)	227, 328
Kzo9I	GATC	3 cut(s)	169, 175, 526
LmnI	GCTCC	1 cut(s)	340
LpnPI	CCDG	3 cut(s)	186, 296, 329
MaeI	CTAG	1 cut(s)	477
MaeII	ACGT	1 cut(s)	108
MalI	GATC	3 cut(s)	171, 177, 528
MboI	GATC	3 cut(s)	169, 175, 526
MboII	GAAGA	3 cut(s)	212, 453, 495
MflI	RGATCY	3 cut(s)	169, 175, 526
MluCI	AATT	1 cut(s)	85
MlyI	GAGTC	1 cut(s)	497
MnlI	CCTC	4 cut(s)	94, 196, 345, 422
MseI	TTAA	2 cut(s)	219, 320
MvnI	CGCG	1 cut(s)	330
NcoI	CCATGG	1 cut(s)	449
NdeII	GATC	3 cut(s)	169, 175, 526
NlaIII	CATG	6 cut(s)	271, 289, 398, 425, 453, 497
NlaIV	GGNNCC	3 cut(s)	127, 171, 315
NspI	RCATGY	2 cut(s)	289, 398
PaeI	GCATGC	1 cut(s)	289
PciI	ACATGT	1 cut(s)	394
PfeI	GAWTC	2 cut(s)	307, 458
PflMI	CCANNNNNTGG	1 cut(s)	179
PleI	GAGTC	1 cut(s)	496
PpsI	GAGTC	1 cut(s)	496
Ppu21I	YACGTR	1 cut(s)	109
PscI	ACATGT	1 cut(s)	394
PspN4I	GGNNCC	3 cut(s)	127, 171, 315
PspPI	GGNCC	2 cut(s)	126, 446
PsuI	RGATCY	3 cut(s)	169, 175, 526
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SaqAI	TTAA	2 cut(s)	219, 320
Sau3AI	GATC	3 cut(s)	169, 175, 526
Sau96I	GGNCC	2 cut(s)	126, 446
SchI	GAGTC	1 cut(s)	497
SetI	ASST	4 cut(s)	111, 298, 356, 448
SinI	GGWCC	1 cut(s)	446
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
SphI	GCATGC	1 cut(s)	289
Sse9I	AATT	1 cut(s)	85
SspMI	CTAG	1 cut(s)	477
StyI	CCWWGG	1 cut(s)	449
TaaI	ACNGT	2 cut(s)	318, 549
TaiI	ACGT	1 cut(s)	111
TasI	AATT	1 cut(s)	85
TfiI	GAWTC	2 cut(s)	307, 458
Tru1I	TTAA	2 cut(s)	219, 320
Tru9I	TTAA	2 cut(s)	219, 320
TscAI	CASTG	1 cut(s)	73
TspDTI	ATGAA	1 cut(s)	510
TspGWI	ACGGA	1 cut(s)	454
TspRI	CASTG	1 cut(s)	73
Van91I	CCANNNNNTGG	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	446
XceI	RCATGY	2 cut(s)	289, 398
XspI	CTAG	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.