Rmu_sc0038730.1_g000001

Wall-associated receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038730.1
OG0021517
Physical Location & Seq
Reverse (-)
1 .. 896
896 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038730.1_g000001.1.cds

Sequence Viewer

Length: 751 bp
atgggattattaccactccttctaggtttgttactactactcctagaaacttcaggaacgctgccccaagcactgcctcattgccaggaccgatgtggtaacgtgtccataccatatccctttggtataaccaagggatgttattggtcctcagagtttttgattcattgcgttattagtggtacaggacccccaataccatatttgtggggccgtcaagtcacttacatagctcccgagacaagtgagttacacattttggagggtgtaacttggacgtgccataatgtgactcaggatgccatttttgataagaagaccgagctgcagttgcctctacatttcacgatatctcaggcaaagaatagcctctttggcgtcgggtgtggtaccacagcagcttttacggacgaacatgatagctacttaagacatggctcatgggaattcaactatacaagtttttgcacttccagatgtgatgacagcctggatgacttccagctacggaagagcaccatgtgttctggatttggttgttgtcgcctatccatttctaaggcagtccaaaacttgaccgttatggtggaaatcgatcagaatgagaccgagtggttctacaaaagatacccatgcagttatgcattcgttgcaggaaatgaccacttcatattctctcctactacgagcttagacgatcttagcagtaaaacctgtcttcctattgttcttagttgggatatcggcagtg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EGF EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

250

Amino Acids

27.91

Weight (kDa)

5.13

Isoelectric Point (pI)

35.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021517)

Species Orthologous Gene IDs
rosa_laevigata RLG00000010190
rosa_multiflora Rmu_sc0002157.1_g000029 Rmu_sc0007400.1_g000004 Rmu_sc0038730.1_g000001
rosa_samantha Rh4BG004900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 389
AccB1I GGYRCC 1 cut(s) 389
AcsI RAATTY 1 cut(s) 446
AcuI CTGAAG 1 cut(s) 36
AcyI GRCGYC 1 cut(s) 378
AdeI CACNNNGTG 1 cut(s) 522
AfaI GTAC 2 cut(s) 184, 391
AflII CTTAAG 1 cut(s) 427
AflIII ACRYGT 1 cut(s) 102
AgsI TTSAA 1 cut(s) 451
AjiI CACGTC 1 cut(s) 279
AjnI CCWGG 2 cut(s) 84, 489
AluBI AGCT 6 cut(s) 233, 325, 401, 423, 505, 690
AluI AGCT 6 cut(s) 233, 325, 401, 423, 505, 690
Alw21I GWGCWC 1 cut(s) 518
Alw26I GTCTC 2 cut(s) 233, 599
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 1 cut(s) 211
ApeKI GCWGC 3 cut(s) 61, 325, 398
ApoI RAATTY 1 cut(s) 446
Asp718I GGTACC 1 cut(s) 389
AspS9I GGNCC 4 cut(s) 88, 147, 188, 211
AvaI CYCGRG 1 cut(s) 236
AvaII GGWCC 3 cut(s) 88, 147, 188
BanI GGYRCC 1 cut(s) 389
BbsI GAAGAC 2 cut(s) 323, 710
Bbv12I GWGCWC 1 cut(s) 518
BbvI GCAGC 3 cut(s) 48, 312, 410
BceAI ACGGC 1 cut(s) 198
BciT130I CCWGG 2 cut(s) 86, 491
BcoDI GTCTC 2 cut(s) 233, 599
BfaI CTAG 2 cut(s) 23, 44
BfmI CTRYAG 1 cut(s) 326
BfrI CTTAAG 1 cut(s) 427
BglI GCCNNNNNGGC 1 cut(s) 375
BisI GCNGC 3 cut(s) 62, 326, 399
BlsI GCNGC 3 cut(s) 63, 327, 400
Bme1390I CCNGG 2 cut(s) 86, 491
Bme18I GGWCC 3 cut(s) 88, 147, 188
BmeT110I CYCGRG 1 cut(s) 236
BmgBI CACGTC 1 cut(s) 279
BmgT120I GGNCC 4 cut(s) 88, 147, 188, 211
BmiI GGNNCC 3 cut(s) 190, 212, 391
BmrFI CCNGG 2 cut(s) 86, 491
BmsI GCATC 1 cut(s) 289
BpiI GAAGAC 2 cut(s) 323, 710
Bsa29I ATCGAT 1 cut(s) 594
BsaHI GRCGYC 1 cut(s) 378
BsaI GGTCTC 1 cut(s) 599
BsaJI CCNNGG 1 cut(s) 132
BsaXI ACNNNNNCTCC 2 cut(s) 24, 54
Bse3DI GCAATG 2 cut(s) 79, 166
BseBI CCWGG 2 cut(s) 86, 491
BseCI ATCGAT 1 cut(s) 594
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 3 cut(s) 143, 304, 499
BseMI GCAATG 2 cut(s) 79, 166
BseMII CTCAG 3 cut(s) 165, 308, 368
BseXI GCAGC 3 cut(s) 48, 312, 410
BshFI GGCC 1 cut(s) 213
BshNI GGYRCC 1 cut(s) 389
BshVI ATCGAT 1 cut(s) 594
BsiHKAI GWGCWC 1 cut(s) 518
BsiHKCI CYCGRG 1 cut(s) 236
BsmAI GTCTC 2 cut(s) 233, 599
BsmI GAATGC 1 cut(s) 644
BsnI GGCC 1 cut(s) 213
Bso31I GGTCTC 1 cut(s) 599
BsoBI CYCGRG 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 518
Bsp143I GATC 2 cut(s) 595, 697
BspANI GGCC 1 cut(s) 213
BspCNI CTCAG 3 cut(s) 164, 307, 367
BspDI ATCGAT 1 cut(s) 594
BspLI GGNNCC 3 cut(s) 190, 212, 391
BspMAI CTGCAG 1 cut(s) 330
BspQI GCTCTTC 1 cut(s) 506
BspT107I GGYRCC 1 cut(s) 389
BspTI CTTAAG 1 cut(s) 427
BspTNI GGTCTC 1 cut(s) 599
BsrDI GCAATG 2 cut(s) 79, 166
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 2 cut(s) 595, 697
BssNI GRCGYC 1 cut(s) 378
BssT1I CCWWGG 1 cut(s) 132
Bst2UI CCWGG 2 cut(s) 86, 491
Bst4CI ACNGT 1 cut(s) 580
Bst6I CTCTTC 1 cut(s) 506
BstACI GRCGYC 1 cut(s) 378
BstAFI CTTAAG 1 cut(s) 427
BstAPI GCANNNNNTGC 1 cut(s) 650
BstDEI CTNAG 7 cut(s) 151, 294, 354, 558, 691, 701, 731
BstF5I GGATG 3 cut(s) 143, 304, 499
BstKTI GATC 2 cut(s) 598, 700
BstMAI GTCTC 2 cut(s) 233, 599
BstMBI GATC 2 cut(s) 595, 697
BstMWI GCNNNNNNNGC 3 cut(s) 331, 375, 650
BstNI CCWGG 2 cut(s) 86, 491
BstSCI CCNGG 2 cut(s) 84, 489
BstSFI CTRYAG 1 cut(s) 326
BstV1I GCAGC 3 cut(s) 48, 312, 410
BstV2I GAAGAC 2 cut(s) 323, 710
BstXI CCANNNNNNTGG 1 cut(s) 207
Bsu15I ATCGAT 1 cut(s) 594
BsuRI GGCC 1 cut(s) 213
BsuTUI ATCGAT 1 cut(s) 594
BtrI CACGTC 1 cut(s) 279
BtsCI GGATG 3 cut(s) 143, 304, 499
BtsI GCAGTG 1 cut(s) 71
BtsIMutI CAGTG 1 cut(s) 71
Cfr13I GGNCC 4 cut(s) 88, 147, 188, 211
ClaI ATCGAT 1 cut(s) 594
CseI GACGC 1 cut(s) 367
Csp6I GTAC 2 cut(s) 183, 390
CviAII CATG 5 cut(s) 416, 434, 441, 520, 633
CviQI GTAC 2 cut(s) 183, 390
DdeI CTNAG 7 cut(s) 151, 294, 354, 558, 691, 701, 731
DpnI GATC 2 cut(s) 597, 699
DpnII GATC 2 cut(s) 595, 697
DraIII CACNNNGTG 1 cut(s) 522
Eam1104I CTCTTC 1 cut(s) 506
EarI CTCTTC 1 cut(s) 506
Eco130I CCWWGG 1 cut(s) 132
Eco31I GGTCTC 1 cut(s) 599
Eco32I GATATC 2 cut(s) 351, 742
Eco47I GGWCC 3 cut(s) 88, 147, 188
Eco57I CTGAAG 1 cut(s) 36
Eco88I CYCGRG 1 cut(s) 236
EcoO109I RGGNCCY 1 cut(s) 188
EcoRI GAATTC 1 cut(s) 446
EcoRII CCWGG 2 cut(s) 84, 489
EcoRV GATATC 2 cut(s) 351, 742
EcoT14I CCWWGG 1 cut(s) 132
EcoT22I ATGCAT 1 cut(s) 646
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 5 cut(s) 419, 437, 444, 523, 636
FatI CATG 5 cut(s) 415, 433, 440, 519, 632
Fnu4HI GCNGC 3 cut(s) 62, 326, 399
FokI GGATG 3 cut(s) 150, 311, 506
Fsp4HI GCNGC 3 cut(s) 62, 326, 399
FspBI CTAG 2 cut(s) 23, 44
GluI GCNGC 3 cut(s) 62, 326, 399
HaeIII GGCC 1 cut(s) 213
HgaI GACGC 1 cut(s) 367
Hin1I GRCGYC 1 cut(s) 378
Hin1II CATG 5 cut(s) 419, 437, 444, 523, 636
HinfI GANTC 2 cut(s) 163, 292
Hpy188I TCNGA 2 cut(s) 154, 600
Hpy188III TCNNGA 6 cut(s) 54, 236, 296, 346, 474, 528
Hpy99I CGWCG 1 cut(s) 383
HpyAV CCTTC 1 cut(s) 29
HpyCH4III ACNGT 1 cut(s) 580
HpyCH4IV ACGT 2 cut(s) 102, 278
HpyCH4V TGCA 5 cut(s) 328, 468, 636, 644, 653
HpyF10VI GCNNNNNNNGC 3 cut(s) 331, 375, 650
HpyF3I CTNAG 7 cut(s) 151, 294, 354, 558, 691, 701, 731
HpySE526I ACGT 2 cut(s) 102, 278
Hsp92I GRCGYC 1 cut(s) 378
Hsp92II CATG 5 cut(s) 419, 437, 444, 523, 636
KpnI GGTACC 1 cut(s) 393
Kzo9I GATC 2 cut(s) 595, 697
LguI GCTCTTC 1 cut(s) 506
LmnI GCTCC 1 cut(s) 238
Lsp1109I GCAGC 3 cut(s) 48, 312, 410
LweI GCATC 1 cut(s) 289
MaeI CTAG 2 cut(s) 23, 44
MaeII ACGT 2 cut(s) 102, 278
MaeIII GTNAC 6 cut(s) 30, 98, 220, 249, 268, 289
MalI GATC 2 cut(s) 597, 699
MboI GATC 2 cut(s) 595, 697
MboII GAAGA 3 cut(s) 328, 523, 710
MhlI GDGCHC 1 cut(s) 518
MluCI AATT 1 cut(s) 446
MlyI GAGTC 1 cut(s) 286
MnlI CCTC 5 cut(s) 87, 160, 256, 345, 380
Mph1103I ATGCAT 1 cut(s) 646
MseI TTAA 1 cut(s) 428
MslI CAYNNNNRTG 1 cut(s) 205
MspCI CTTAAG 1 cut(s) 427
MspR9I CCNGG 2 cut(s) 86, 491
Mva1269I GAATGC 1 cut(s) 644
MvaI CCWGG 2 cut(s) 86, 491
MwoI GCNNNNNNNGC 3 cut(s) 331, 375, 650
NdeII GATC 2 cut(s) 595, 697
NlaIII CATG 5 cut(s) 419, 437, 444, 523, 636
NlaIV GGNNCC 3 cut(s) 190, 212, 391
NmuCI GTSAC 2 cut(s) 220, 289
NsiI ATGCAT 1 cut(s) 646
PciSI GCTCTTC 1 cut(s) 506
PctI GAATGC 1 cut(s) 644
PfeI GAWTC 1 cut(s) 163
PkrI GCNGC 3 cut(s) 63, 327, 400
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
PpuMI RGGWCCY 1 cut(s) 188
Psp5II RGGWCCY 1 cut(s) 188
Psp6I CCWGG 2 cut(s) 84, 489
PspGI CCWGG 2 cut(s) 84, 489
PspN4I GGNNCC 3 cut(s) 190, 212, 391
PspPI GGNCC 4 cut(s) 88, 147, 188, 211
PspPPI RGGWCCY 1 cut(s) 188
PstI CTGCAG 1 cut(s) 330
RsaI GTAC 2 cut(s) 184, 391
RsaNI GTAC 2 cut(s) 183, 390
RseI CAYNNNNRTG 1 cut(s) 205
SapI GCTCTTC 1 cut(s) 506
SaqAI TTAA 1 cut(s) 428
SatI GCNGC 3 cut(s) 62, 326, 399
Sau3AI GATC 2 cut(s) 595, 697
Sau96I GGNCC 4 cut(s) 88, 147, 188, 211
SchI GAGTC 1 cut(s) 286
ScrFI CCNGG 2 cut(s) 86, 491
SduI GDGCHC 1 cut(s) 518
SfaNI GCATC 1 cut(s) 289
SfcI CTRYAG 1 cut(s) 326
SinI GGWCC 3 cut(s) 88, 147, 188
SmiMI CAYNNNNRTG 1 cut(s) 205
SmlI CTYRAG 1 cut(s) 427
SmoI CTYRAG 1 cut(s) 427
Sse9I AATT 1 cut(s) 446
SspMI CTAG 2 cut(s) 23, 44
StyD4I CCNGG 2 cut(s) 84, 489
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 1 cut(s) 580
TaiI ACGT 2 cut(s) 105, 281
TaqI TCGA 1 cut(s) 594
TaqII GACCGA 3 cut(s) 105, 335, 623
TasI AATT 1 cut(s) 446
TfiI GAWTC 1 cut(s) 163
Tru1I TTAA 1 cut(s) 428
Tru9I TTAA 1 cut(s) 428
TscAI CASTG 1 cut(s) 78
TseFI GTSAC 2 cut(s) 220, 289
TseI GCWGC 3 cut(s) 61, 325, 398
Tsp45I GTSAC 2 cut(s) 220, 289
TspDTI ATGAA 2 cut(s) 155, 658
TspGWI ACGGA 2 cut(s) 422, 523
TspRI CASTG 1 cut(s) 78
Vha464I CTTAAG 1 cut(s) 427
VpaK11BI GGWCC 3 cut(s) 88, 147, 188
XapI RAATTY 1 cut(s) 446
XcmI CCANNNNNNNNNTGG 1 cut(s) 92
XspI CTAG 2 cut(s) 23, 44
Zsp2I ATGCAT 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.