Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039115.1

Orthogroup ID

OG0023143

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1192

Gene Structure 1192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039115.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 434 bp

ttgaacccaaaaacccgtcgcttcttcttgatggcagtgggtttggtagtggcgggtgtagggaaagcttgcctcttgggacttcaagaaagcctcagtgggtttcatctgccactttgtgggtatttcttgctggaacgaccgcgagaatcgaatctacaaccttgagctcagggacatgtctatgtaatgatctttttggagtgatccctaatgatcagtgtgcttggttgtcgtatatggttactttggatttgtccaggaacaaattcacgggtccaatcccagctgatttgcagaagtgtactttcttgaacggtctgatcctttcggataataagcttacgggtagtattccttatgagttttctagctttactaggctgaagaagttttctgtggcgaataatcagttgagtgggactataccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0008150 GO:0009507 GO:0009536 GO:0016020 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043901 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0065007 GO:0071944 GO:0080134 GO:1900150 GO:1900424 GO:1900425

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

143

Amino Acids

15.4

Weight (kDa)

8.38

Isoelectric Point (pI)

36.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023143)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0023554.1_g000001 Rmu_sc0039115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155010
rosa_samantha	Rh2AG012700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	119
AccII	CGCG	1 cut(s)	145
AciI	CCGC	2 cut(s)	53, 143
AclWI	GGATC	2 cut(s)	201, 318
AcsI	RAATTY	1 cut(s)	268
AcuI	CTGAAG	1 cut(s)	406
AdeI	CACNNNGTG	1 cut(s)	119
AfaI	GTAC	1 cut(s)	306
AfiI	CCNNNNNNNGG	1 cut(s)	119
AflIII	ACRYGT	1 cut(s)	178
AgsI	TTSAA	3 cut(s)	4, 86, 315
AjnI	CCWGG	1 cut(s)	259
AluBI	AGCT	5 cut(s)	68, 170, 289, 342, 374
AluI	AGCT	5 cut(s)	68, 170, 289, 342, 374
Alw21I	GWGCWC	1 cut(s)	172
AlwI	GGATC	2 cut(s)	201, 318
ApoI	RAATTY	1 cut(s)	268
Asp700I	GAANNNNTTC	1 cut(s)	268
AspS9I	GGNCC	1 cut(s)	277
AvaII	GGWCC	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	172
Bbv12I	GWGCWC	1 cut(s)	172
BccI	CCATC	1 cut(s)	25
BciT130I	CCWGG	1 cut(s)	261
BclI	TGATCA	1 cut(s)	216
BfaI	CTAG	2 cut(s)	371, 380
Bme1390I	CCNGG	1 cut(s)	261
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	278
BmrFI	CCNGG	1 cut(s)	261
Bpu10I	CCTNAGC	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
BseBI	CCWGG	1 cut(s)	261
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseMII	CTCAG	2 cut(s)	109, 185
BseYI	CCCAGC	1 cut(s)	285
Bsh1236I	CGCG	1 cut(s)	145
Bsh1285I	CGRYCG	1 cut(s)	143
BsiEI	CGRYCG	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	172
BslFI	GGGAC	2 cut(s)	93, 189
BslI	CCNNNNNNNGG	1 cut(s)	119
BsmFI	GGGAC	2 cut(s)	93, 189
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp143I	GATC	4 cut(s)	192, 206, 216, 323
BspACI	CCGC	2 cut(s)	53, 143
BspCNI	CTCAG	2 cut(s)	108, 184
BspFNI	CGCG	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	278
BspPI	GGATC	2 cut(s)	201, 318
BssMI	GATC	4 cut(s)	192, 206, 216, 323
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	1 cut(s)	319
BstC8I	GCNNGC	1 cut(s)	70
BstDEI	CTNAG	2 cut(s)	95, 171
BstFNI	CGCG	1 cut(s)	145
BstKTI	GATC	4 cut(s)	195, 209, 219, 326
BstMBI	GATC	4 cut(s)	192, 206, 216, 323
BstMCI	CGRYCG	1 cut(s)	143
BstNI	CCWGG	1 cut(s)	261
BstNSI	RCATGY	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	259
BstUI	CGCG	1 cut(s)	145
BtsI	GCAGTG	1 cut(s)	42
BtsIMutI	CAGTG	3 cut(s)	42, 103, 226
Cac8I	GCNNGC	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	277
Csp6I	GTAC	1 cut(s)	305
CviAII	CATG	1 cut(s)	179
CviJI	RGCY	7 cut(s)	68, 93, 170, 289, 342, 374, 384
CviKI_1	RGCY	7 cut(s)	68, 93, 170, 289, 342, 374, 384
CviQI	GTAC	1 cut(s)	305
DdeI	CTNAG	2 cut(s)	95, 171
DpnI	GATC	4 cut(s)	194, 208, 218, 325
DpnII	GATC	4 cut(s)	192, 206, 216, 323
DraIII	CACNNNGTG	1 cut(s)	119
Ecl136II	GAGCTC	1 cut(s)	170
Eco24I	GRGCYC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	277
Eco53kI	GAGCTC	1 cut(s)	170
Eco57I	CTGAAG	1 cut(s)	406
EcoICRI	GAGCTC	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	172
FaeI	CATG	1 cut(s)	182
FaiI	YATR	7 cut(s)	180, 186, 239, 241, 362, 427, 432
FaqI	GGGAC	2 cut(s)	93, 189
FatI	CATG	1 cut(s)	178
FauI	CCCGC	1 cut(s)	46
FbaI	TGATCA	1 cut(s)	216
FriOI	GRGCYC	1 cut(s)	172
FspBI	CTAG	2 cut(s)	371, 380
GsaI	CCCAGC	1 cut(s)	289
Hin1II	CATG	1 cut(s)	182
HindIII	AAGCTT	2 cut(s)	66, 340
HinfI	GANTC	2 cut(s)	149, 154
Hpy166II	GTNNAC	1 cut(s)	305
Hpy188I	TCNGA	2 cut(s)	323, 333
Hpy188III	TCNNGA	3 cut(s)	28, 86, 312
Hpy8I	GTNNAC	1 cut(s)	305
Hpy99I	CGWCG	1 cut(s)	21
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4V	TGCA	1 cut(s)	297
HpyF3I	CTNAG	2 cut(s)	95, 171
Hsp92II	CATG	1 cut(s)	182
Ksp22I	TGATCA	1 cut(s)	216
Kzo9I	GATC	4 cut(s)	192, 206, 216, 323
LpnPI	CCDG	5 cut(s)	119, 158, 246, 273, 299
MaeI	CTAG	2 cut(s)	371, 380
MaeIII	GTNAC	1 cut(s)	243
MalI	GATC	4 cut(s)	194, 208, 218, 325
MboI	GATC	4 cut(s)	192, 206, 216, 323
MboII	GAAGA	2 cut(s)	16, 399
MhlI	GDGCHC	1 cut(s)	172
MluCI	AATT	1 cut(s)	268
MnlI	CCTC	2 cut(s)	83, 104
MroXI	GAANNNNTTC	1 cut(s)	268
MslI	CAYNNNNRTG	1 cut(s)	183
MspA1I	CMGCKG	1 cut(s)	289
MspR9I	CCNGG	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	261
MvnI	CGCG	1 cut(s)	145
NdeII	GATC	4 cut(s)	192, 206, 216, 323
NlaIII	CATG	1 cut(s)	182
NlaIV	GGNNCC	1 cut(s)	278
NspI	RCATGY	1 cut(s)	182
PciI	ACATGT	1 cut(s)	178
PdmI	GAANNNNTTC	1 cut(s)	268
PfeI	GAWTC	2 cut(s)	149, 154
PflMI	CCANNNNNTGG	1 cut(s)	119
PfoI	TCCNGGA	1 cut(s)	259
PscI	ACATGT	1 cut(s)	178
Psp124BI	GAGCTC	1 cut(s)	172
Psp6I	CCWGG	1 cut(s)	259
PspFI	CCCAGC	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	259
PspN4I	GGNNCC	1 cut(s)	278
PspPI	GGNCC	1 cut(s)	277
PvuII	CAGCTG	1 cut(s)	289
RsaI	GTAC	1 cut(s)	306
RsaNI	GTAC	1 cut(s)	305
RseI	CAYNNNNRTG	1 cut(s)	183
SacI	GAGCTC	1 cut(s)	172
Sau3AI	GATC	4 cut(s)	192, 206, 216, 323
Sau96I	GGNCC	1 cut(s)	277
ScrFI	CCNGG	1 cut(s)	261
SduI	GDGCHC	1 cut(s)	172
SetI	ASST	6 cut(s)	70, 166, 172, 291, 344, 376
SinI	GGWCC	1 cut(s)	277
SmiMI	CAYNNNNRTG	1 cut(s)	183
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
Sse9I	AATT	1 cut(s)	268
SsiI	CCGC	2 cut(s)	53, 143
SspMI	CTAG	2 cut(s)	371, 380
SstI	GAGCTC	1 cut(s)	172
StyD4I	CCNGG	1 cut(s)	259
TaaI	ACNGT	1 cut(s)	319
TaqI	TCGA	1 cut(s)	152
TasI	AATT	1 cut(s)	268
TatI	WGTACW	1 cut(s)	304
TfiI	GAWTC	2 cut(s)	149, 154
TscAI	CASTG	3 cut(s)	42, 103, 226
TspDTI	ATGAA	1 cut(s)	95
TspRI	CASTG	3 cut(s)	42, 103, 226
Van91I	CCANNNNNTGG	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	277
XapI	RAATTY	1 cut(s)	268
XceI	RCATGY	1 cut(s)	182
XmnI	GAANNNNTTC	1 cut(s)	268
XspI	CTAG	2 cut(s)	371, 380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.