Rroxscaffold_2G00155010

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0023143
Physical Location & Seq
Forward (+)
91433481 .. 91443923
10443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00155010.1

Sequence Viewer

Length: 723 bp
ATGATACCACCTCAACAAAACTATTTCAAGCTCAATTTTAATGGCTCAATTATTTCAAACCAGAGTAGTGCAGGAGAATTTGTTTTTCGTGATACTAATGAAAAATCAATTCTTGTTTCTGCTAACTCCTTGAGAACCACGAATATTTTTAATGTTGAAACCTTGGCCTCAAGGGCTGGTTTGAATATTGCTTGGCTTCATGGTTTTTCAAATCTTGAAGTTGAAAGTGAGTCGAAGATTTTGAGTTCTGAATCTGATATAAAATCTCTGGCGTGTAAAACTACGGCCTGCAGTAGTTACACTCGTGAAAAACAACAATGGTGCATTGCTGACTTGCAGCTAGCCGCTTTTTTCAATCACTATTTTGCAGAATCTGGATCTACAGGTAATGATCTTTCTGGAGTGATCCCTAATGATCTGTGTGCTTGGTTGTCGTATATGGCCACTTTGGATTTGTCCGGGAACGGATTCACTGGTCCAATCCCAACTGATTTGCAGAAGGTTTGGCTCACAGGCAAACGAGAGAATGTCATCCACAAACTTGCGATTTTGAATAGACCACAGCCAAGCATTCGAAGCAAAATTCATTGGCGTACTCGGATGATCATGAAATTGAAGTCCAGTCTATCACGCATCGATCTTTCTGATGAGCCTTCTTCTATAATCTATATTATTGGCCCTCCATCTCCACGCGTTGCTTTAGTGAACGATATACGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

240

Amino Acids

26.7

Weight (kDa)

8.67

Isoelectric Point (pI)

46.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 12 - 82 2.6e-07 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023143)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0023554.1_g000001 Rmu_sc0039115.1_g000001
rosa_roxburghii Rroxscaffold_2G00155010
rosa_samantha Rh2AG012700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 693
AciI CCGC 1 cut(s) 345
AclWI GGATC 2 cut(s) 385, 400
AcoI YGGCCR 1 cut(s) 441
AcsI RAATTY 2 cut(s) 77, 582
AfaI GTAC 1 cut(s) 595
AflIII ACRYGT 2 cut(s) 691, 715
AluBI AGCT 2 cut(s) 31, 340
AluI AGCT 2 cut(s) 31, 340
AlwI GGATC 2 cut(s) 385, 400
AlwNI CAGNNNCTG 1 cut(s) 374
AoxI GGCC 4 cut(s) 165, 285, 441, 676
ApeKI GCWGC 1 cut(s) 337
ApoI RAATTY 2 cut(s) 77, 582
Asp700I GAANNNNTTC 1 cut(s) 467
AspS9I GGNCC 2 cut(s) 476, 677
AsuC2I CCSGG 1 cut(s) 460
AsuII TTCGAA 1 cut(s) 574
AsuNHI GCTAGC 1 cut(s) 340
AvaII GGWCC 1 cut(s) 476
BalI TGGCCA 1 cut(s) 443
BauI CACGAG 1 cut(s) 303
BbvI GCAGC 1 cut(s) 349
BccI CCATC 1 cut(s) 691
BceAI ACGGC 1 cut(s) 300
BclI TGATCA 1 cut(s) 603
BcnI CCSGG 1 cut(s) 460
BfaI CTAG 1 cut(s) 341
BfmI CTRYAG 2 cut(s) 289, 381
BglI GCCNNNNNGGC 1 cut(s) 173
BisI GCNGC 2 cut(s) 338, 345
BlsI GCNGC 2 cut(s) 339, 346
Bme1390I CCNGG 1 cut(s) 460
Bme18I GGWCC 1 cut(s) 476
BmgT120I GGNCC 2 cut(s) 476, 677
BmrFI CCNGG 1 cut(s) 460
BmsI GCATC 1 cut(s) 642
BmtI GCTAGC 1 cut(s) 344
BpmI CTGGAG 1 cut(s) 420
Bpu14I TTCGAA 1 cut(s) 574
BpuEI CTTGAG 2 cut(s) 151, 154
BpuMI CCSGG 1 cut(s) 460
Bsa29I ATCGAT 1 cut(s) 636
BsaAI YACGTR 1 cut(s) 716
BsaJI CCNNGG 1 cut(s) 162
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bse1I ACTGG 2 cut(s) 478, 621
Bse3DI GCAATG 1 cut(s) 324
BseCI ATCGAT 1 cut(s) 636
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 2 cut(s) 531, 606
BseMI GCAATG 1 cut(s) 324
BseNI ACTGG 2 cut(s) 478, 621
BseXI GCAGC 1 cut(s) 349
BsgI GTGCAG 1 cut(s) 90
Bsh1236I CGCG 1 cut(s) 693
BshFI GGCC 4 cut(s) 167, 287, 443, 678
BshVI ATCGAT 1 cut(s) 636
BsiSI CCGG 1 cut(s) 459
BsmI GAATGC 1 cut(s) 570
BsnI GGCC 4 cut(s) 167, 287, 443, 678
Bsp119I TTCGAA 1 cut(s) 574
Bsp143I GATC 6 cut(s) 377, 391, 405, 415, 603, 637
BspACI CCGC 1 cut(s) 345
BspANI GGCC 4 cut(s) 167, 287, 443, 678
BspDI ATCGAT 1 cut(s) 636
BspFNI CGCG 1 cut(s) 693
BspHI TCATGA 1 cut(s) 606
BspMAI CTGCAG 1 cut(s) 293
BspOI GCTAGC 1 cut(s) 344
BspPI GGATC 2 cut(s) 385, 400
BspT104I TTCGAA 1 cut(s) 574
BsrDI GCAATG 1 cut(s) 324
BsrI ACTGG 2 cut(s) 478, 621
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 6 cut(s) 377, 391, 405, 415, 603, 637
BssSI CACGAG 1 cut(s) 303
BssT1I CCWWGG 1 cut(s) 162
Bst2BI CACGAG 1 cut(s) 303
BstBAI YACGTR 1 cut(s) 716
BstBI TTCGAA 1 cut(s) 574
BstC8I GCNNGC 2 cut(s) 289, 342
BstF5I GGATG 2 cut(s) 531, 606
BstFNI CGCG 1 cut(s) 693
BstKTI GATC 6 cut(s) 380, 394, 408, 418, 606, 640
BstMBI GATC 6 cut(s) 377, 391, 405, 415, 603, 637
BstMWI GCNNNNNNNGC 2 cut(s) 173, 576
BstSCI CCNGG 1 cut(s) 458
BstSFI CTRYAG 2 cut(s) 289, 381
BstUI CGCG 1 cut(s) 693
BstV1I GCAGC 1 cut(s) 349
BstX2I RGATCY 1 cut(s) 377
BstYI RGATCY 1 cut(s) 377
Bsu15I ATCGAT 1 cut(s) 636
BsuRI GGCC 4 cut(s) 167, 287, 443, 678
BsuTUI ATCGAT 1 cut(s) 636
BtsCI GGATG 2 cut(s) 531, 606
BtsIMutI CAGTG 1 cut(s) 471
Cac8I GCNNGC 2 cut(s) 289, 342
CaiI CAGNNNCTG 1 cut(s) 374
CciI TCATGA 1 cut(s) 606
Cfr13I GGNCC 2 cut(s) 476, 677
ClaI ATCGAT 1 cut(s) 636
Csp6I GTAC 1 cut(s) 594
CviAII CATG 2 cut(s) 200, 607
CviQI GTAC 1 cut(s) 594
DpnI GATC 6 cut(s) 379, 393, 407, 417, 605, 639
DpnII GATC 6 cut(s) 377, 391, 405, 415, 603, 637
EaeI YGGCCR 1 cut(s) 441
Eco130I CCWWGG 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 476
EcoT14I CCWWGG 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 2 cut(s) 203, 610
FaiI YATR 9 cut(s) 201, 260, 438, 440, 608, 662, 669, 713, 721
FatI CATG 2 cut(s) 199, 606
FbaI TGATCA 1 cut(s) 603
Fnu4HI GCNGC 2 cut(s) 338, 345
FokI GGATG 2 cut(s) 518, 613
Fsp4HI GCNGC 2 cut(s) 338, 345
FspBI CTAG 1 cut(s) 341
GluI GCNGC 2 cut(s) 338, 345
GsuI CTGGAG 1 cut(s) 420
HaeIII GGCC 4 cut(s) 167, 287, 443, 678
HapII CCGG 1 cut(s) 459
Hin1II CATG 2 cut(s) 203, 610
HinfI GANTC 4 cut(s) 230, 251, 371, 468
HpaII CCGG 1 cut(s) 459
Hpy166II GTNNAC 1 cut(s) 706
Hpy188I TCNGA 4 cut(s) 250, 256, 600, 646
Hpy188III TCNNGA 6 cut(s) 89, 215, 305, 375, 399, 607
Hpy8I GTNNAC 1 cut(s) 706
HpyAV CCTTC 2 cut(s) 493, 663
HpyCH4IV ACGT 1 cut(s) 715
HpyCH4V TGCA 6 cut(s) 71, 291, 324, 337, 368, 496
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 576
HpySE526I ACGT 1 cut(s) 715
Hsp92II CATG 2 cut(s) 203, 610
Ksp22I TGATCA 1 cut(s) 603
Kzo9I GATC 6 cut(s) 377, 391, 405, 415, 603, 637
Lsp1109I GCAGC 1 cut(s) 349
LweI GCATC 1 cut(s) 642
MaeI CTAG 1 cut(s) 341
MaeII ACGT 1 cut(s) 715
MaeIII GTNAC 1 cut(s) 296
MalI GATC 6 cut(s) 379, 393, 407, 417, 605, 639
MboI GATC 6 cut(s) 377, 391, 405, 415, 603, 637
MboII GAAGA 2 cut(s) 247, 648
MflI RGATCY 1 cut(s) 377
MlsI TGGCCA 1 cut(s) 443
MluCI AATT 6 cut(s) 34, 48, 77, 108, 582, 611
MluI ACGCGT 1 cut(s) 691
MluNI TGGCCA 1 cut(s) 443
MlyI GAGTC 1 cut(s) 239
MnlI CCTC 3 cut(s) 21, 178, 690
Mox20I TGGCCA 1 cut(s) 443
MroXI GAANNNNTTC 1 cut(s) 467
MscI TGGCCA 1 cut(s) 443
MseI TTAA 2 cut(s) 39, 150
Msp20I TGGCCA 1 cut(s) 443
MspI CCGG 1 cut(s) 459
MspR9I CCNGG 1 cut(s) 460
Mva1269I GAATGC 1 cut(s) 570
MvnI CGCG 1 cut(s) 693
MwoI GCNNNNNNNGC 2 cut(s) 173, 576
NciI CCSGG 1 cut(s) 460
NdeII GATC 6 cut(s) 377, 391, 405, 415, 603, 637
NheI GCTAGC 1 cut(s) 340
NlaIII CATG 2 cut(s) 203, 610
NspV TTCGAA 1 cut(s) 574
PagI TCATGA 1 cut(s) 606
PctI GAATGC 1 cut(s) 570
PdmI GAANNNNTTC 1 cut(s) 467
PfeI GAWTC 3 cut(s) 251, 371, 468
PfoI TCCNGGA 1 cut(s) 458
PkrI GCNGC 2 cut(s) 339, 346
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
Ppu21I YACGTR 1 cut(s) 716
PspPI GGNCC 2 cut(s) 476, 677
PstI CTGCAG 1 cut(s) 293
PstNI CAGNNNCTG 1 cut(s) 374
PsuI RGATCY 1 cut(s) 377
RsaI GTAC 1 cut(s) 595
RsaNI GTAC 1 cut(s) 594
SaqAI TTAA 2 cut(s) 39, 150
SatI GCNGC 2 cut(s) 338, 345
Sau3AI GATC 6 cut(s) 377, 391, 405, 415, 603, 637
Sau96I GGNCC 2 cut(s) 476, 677
SchI GAGTC 1 cut(s) 239
ScrFI CCNGG 1 cut(s) 460
SetI ASST 7 cut(s) 13, 33, 164, 342, 388, 504, 718
SfaNI GCATC 1 cut(s) 642
SfcI CTRYAG 2 cut(s) 289, 381
SfuI TTCGAA 1 cut(s) 574
SinI GGWCC 1 cut(s) 476
SmlI CTYRAG 2 cut(s) 130, 169
SmoI CTYRAG 2 cut(s) 130, 169
Sse9I AATT 6 cut(s) 34, 48, 77, 108, 582, 611
SsiI CCGC 1 cut(s) 345
SspI AATATT 2 cut(s) 145, 187
SspMI CTAG 1 cut(s) 341
StyD4I CCNGG 1 cut(s) 458
StyI CCWWGG 1 cut(s) 162
TaiI ACGT 1 cut(s) 718
TaqI TCGA 3 cut(s) 233, 574, 636
TasI AATT 6 cut(s) 34, 48, 77, 108, 582, 611
TauI GCSGC 1 cut(s) 347
TfiI GAWTC 3 cut(s) 251, 371, 468
Tru1I TTAA 2 cut(s) 39, 150
Tru9I TTAA 2 cut(s) 39, 150
TscAI CASTG 1 cut(s) 478
TseI GCWGC 1 cut(s) 337
TspDTI ATGAA 4 cut(s) 114, 188, 575, 623
TspGWI ACGGA 1 cut(s) 480
TspRI CASTG 1 cut(s) 478
VpaK11BI GGWCC 1 cut(s) 476
XapI RAATTY 2 cut(s) 77, 582
XmnI GAANNNNTTC 1 cut(s) 467
XspI CTAG 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.