Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039182.1

Orthogroup ID

OG0023119

Physical Location & Seq

Genomic Coordinates Reverse (-)

1060 .. 1428

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039182.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atggaccatgaggtggccatgacacttggatcagtcttcatgttgtcattccttctagttggtggatactatgttcaacaggtgcctagatttatagcttggatcaagtacctttcgttctctcactactcgtacaaactcttcttggggtctcaatacaagacagatgagacatatccatgtgacgatgctggaggagtttgcgtgattgcagattatccagctataaaaatggtggggcttgatggacaatttagctccgtgattgctttggttttcatgcttgtaggttacaggctaattgcttatgtcgccctcatgaggattggggttacaggaaaacaatgtagggcaggaaactcgtggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009965 GO:0010016 GO:0010051 GO:0010154 GO:0010222 GO:0010588 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0042623 GO:0042626 GO:0042802 GO:0042803 GO:0043492 GO:0044425 GO:0044464 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071944 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko01523 ko02010 ko04976 map01523 map02010 map04976

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

122

Amino Acids

13.63

Weight (kDa)

7.69

Isoelectric Point (pI)

17.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023119)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005966.1_g000023 Rmu_sc0039182.1_g000001
rosa_rugosa	Rorug05G0280600
rosa_samantha	Rh5CG388300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	82
AccB7I	CCANNNNNTGG	1 cut(s)	13
AclWI	GGATC	2 cut(s)	37, 110
AcoI	YGGCCR	1 cut(s)	15
AfaI	GTAC	2 cut(s)	110, 134
AfiI	CCNNNNNNNGG	2 cut(s)	13, 321
AgsI	TTSAA	1 cut(s)	77
AloI	GAACNNNNNNTCC	2 cut(s)	57, 89
AluBI	AGCT	3 cut(s)	98, 224, 258
AluI	AGCT	3 cut(s)	98, 224, 258
Alw26I	GTCTC	2 cut(s)	156, 164
AlwI	GGATC	2 cut(s)	37, 110
AoxI	GGCC	1 cut(s)	15
AspS9I	GGNCC	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	4
BalI	TGGCCA	1 cut(s)	17
BanI	GGYRCC	1 cut(s)	82
BarI	GAAGNNNNNNTAC	2 cut(s)	125, 157
BauI	CACGAG	1 cut(s)	361
BbsI	GAAGAC	1 cut(s)	28
BccI	CCATC	1 cut(s)	239
BcgI	CGANNNNNNTGC	1 cut(s)	342
BciVI	GTATCC	1 cut(s)	59
BcoDI	GTCTC	2 cut(s)	156, 164
BfaI	CTAG	2 cut(s)	56, 87
BfuI	GTATCC	1 cut(s)	59
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	84
BmsI	GCATC	1 cut(s)	178
BpiI	GAAGAC	1 cut(s)	28
BpmI	CTGGAG	1 cut(s)	213
BsaI	GGTCTC	1 cut(s)	156
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 321
BseLI	CCNNNNNNNGG	2 cut(s)	13, 321
BseRI	GAGGAG	1 cut(s)	210
BshFI	GGCC	1 cut(s)	17
BshNI	GGYRCC	1 cut(s)	82
BslI	CCNNNNNNNGG	2 cut(s)	13, 321
BsmAI	GTCTC	2 cut(s)	156, 164
BsnI	GGCC	1 cut(s)	17
Bso31I	GGTCTC	1 cut(s)	156
Bsp143I	GATC	2 cut(s)	29, 102
BspANI	GGCC	1 cut(s)	17
BspHI	TCATGA	1 cut(s)	318
BspLI	GGNNCC	1 cut(s)	84
BspPI	GGATC	2 cut(s)	37, 110
BspT107I	GGYRCC	1 cut(s)	82
BspTNI	GGTCTC	1 cut(s)	156
BssMI	GATC	2 cut(s)	29, 102
BssSI	CACGAG	1 cut(s)	361
Bst2BI	CACGAG	1 cut(s)	361
Bst6I	CTCTTC	1 cut(s)	146
BstKTI	GATC	2 cut(s)	32, 105
BstMAI	GTCTC	2 cut(s)	156, 164
BstMBI	GATC	2 cut(s)	29, 102
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstV2I	GAAGAC	1 cut(s)	28
BsuI	GTATCC	1 cut(s)	59
BsuRI	GGCC	1 cut(s)	17
CciI	TCATGA	1 cut(s)	318
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	2 cut(s)	109, 133
CviAII	CATG	6 cut(s)	8, 19, 40, 180, 280, 319
CviJI	RGCY	6 cut(s)	17, 98, 224, 241, 258, 298
CviKI_1	RGCY	6 cut(s)	17, 98, 224, 241, 258, 298
CviQI	GTAC	2 cut(s)	109, 133
DpnI	GATC	2 cut(s)	31, 104
DpnII	GATC	2 cut(s)	29, 102
EaeI	YGGCCR	1 cut(s)	15
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Eco31I	GGTCTC	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	4
FaeI	CATG	6 cut(s)	11, 22, 43, 183, 283, 322
FatI	CATG	6 cut(s)	7, 18, 39, 179, 279, 318
FspBI	CTAG	2 cut(s)	56, 87
GsuI	CTGGAG	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	17
Hin1II	CATG	6 cut(s)	11, 22, 43, 183, 283, 322
Hpy188III	TCNNGA	1 cut(s)	319
HpyAV	CCTTC	1 cut(s)	62
HpyCH4V	TGCA	1 cut(s)	212
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
Hsp92II	CATG	6 cut(s)	11, 22, 43, 183, 283, 322
Kzo9I	GATC	2 cut(s)	29, 102
LmnI	GCTCC	1 cut(s)	263
LpnPI	CCDG	6 cut(s)	65, 177, 234, 280, 321, 339
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	2 cut(s)	56, 87
MaeIII	GTNAC	3 cut(s)	182, 290, 331
MalI	GATC	2 cut(s)	31, 104
MboI	GATC	2 cut(s)	29, 102
MboII	GAAGA	2 cut(s)	28, 133
MlsI	TGGCCA	1 cut(s)	17
MluCI	AATT	2 cut(s)	251, 300
MluNI	TGGCCA	1 cut(s)	17
MnlI	CCTC	4 cut(s)	4, 188, 315, 326
Mox20I	TGGCCA	1 cut(s)	17
MscI	TGGCCA	1 cut(s)	17
MslI	CAYNNNNRTG	1 cut(s)	178
Msp20I	TGGCCA	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	311
NdeII	GATC	2 cut(s)	29, 102
NlaIII	CATG	6 cut(s)	11, 22, 43, 183, 283, 322
NlaIV	GGNNCC	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	182
PagI	TCATGA	1 cut(s)	318
PflMI	CCANNNNNTGG	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	84
PspPI	GGNCC	1 cut(s)	4
PsrI	GAACNNNNNNTAC	2 cut(s)	101, 133
RsaI	GTAC	2 cut(s)	110, 134
RsaNI	GTAC	2 cut(s)	109, 133
RseI	CAYNNNNRTG	1 cut(s)	178
Sau3AI	GATC	2 cut(s)	29, 102
Sau96I	GGNCC	1 cut(s)	4
SetI	ASST	7 cut(s)	15, 84, 100, 114, 226, 260, 292
SfaNI	GCATC	1 cut(s)	178
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	178
Sse9I	AATT	2 cut(s)	251, 300
SspMI	CTAG	2 cut(s)	56, 87
TasI	AATT	2 cut(s)	251, 300
TseFI	GTSAC	1 cut(s)	182
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	2 cut(s)	28, 268
TspGWI	ACGGA	1 cut(s)	250
Van91I	CCANNNNNTGG	1 cut(s)	13
VpaK11BI	GGWCC	1 cut(s)	4
XspI	CTAG	2 cut(s)	56, 87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.