Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0023119

Physical Location & Seq

Genomic Coordinates Reverse (-)

51145680 .. 51147715

Gene Structure 2036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG388300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGCTCCAAAAGGAACGGTCTTCTGGCACTTACAGACTTTCCTCCTATTTCATGTCAAGGATTGTCGCTGACCTACCCATGGAACTTGTTCTTCCTACCCTATTCCTCGCAATAACATACTGGTCGGCAGGCCTAAAATCCACTATTGGACATTTCTTGCATGCCTTGTTGGTTCTGTTACTCAGTGTTTCAGTTTCTCAAGGCGTAGGACTTGCTCTTGGTGCTTTGGTAATGGACCATGAGGTGGCCATGACACTTGGATCGGTCTTCATGTTGTCATTCCTTCTAGTTGGTGGATACTATGTTCAACAGGTGCCTAGATTTATAGCTTGGATCAAGTACCTTTCGTTCTCTCACTACTCGTACAAACTCTTCTTGGGGTCTCAATACAAGACAGATGAGACATATCCATGTGACGATGCTGGAGGAGTTTGCGTGATTGCAGATTATCCAGCTATAAAAATGGTGGGGCTTGATGGACAATTTAGCTCTGTGATTGCTTTGGTTTTCATGCTTGTAGGTTACAGGCTAATTGCTTATGTCGCCCTCATGAGGATTGGGGTTACAGGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009965 GO:0010016 GO:0010051 GO:0010154 GO:0010222 GO:0010588 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0042623 GO:0042626 GO:0042802 GO:0042803 GO:0043492 GO:0044425 GO:0044464 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071944 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko01523 ko02010 ko04976 map01523 map02010 map04976

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

191

Amino Acids

21.07

Weight (kDa)

8.48

Isoelectric Point (pI)

21.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane	PF01061	2 - 130	4.2e-29	ABC-2 type transporter
ABC2_membrane_3	PF12698	11 - 180	2.4e-07	ABC-2 family transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023119)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005966.1_g000023 Rmu_sc0039182.1_g000001
rosa_rugosa	Rorug05G0280600
rosa_samantha	Rh5CG388300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	313
AccB7I	CCANNNNNTGG	1 cut(s)	244
AclWI	GGATC	2 cut(s)	268, 341
AcoI	YGGCCR	1 cut(s)	246
AfaI	GTAC	2 cut(s)	341, 365
AfiI	CCNNNNNNNGG	3 cut(s)	79, 244, 552
AgsI	TTSAA	1 cut(s)	308
AloI	GAACNNNNNNTCC	2 cut(s)	288, 320
AluBI	AGCT	3 cut(s)	329, 455, 489
AluI	AGCT	3 cut(s)	329, 455, 489
Alw26I	GTCTC	2 cut(s)	387, 395
AlwI	GGATC	2 cut(s)	268, 341
AoxI	GGCC	2 cut(s)	130, 246
Asp700I	GAANNNNTTC	1 cut(s)	87
AspS9I	GGNCC	1 cut(s)	235
AvaII	GGWCC	1 cut(s)	235
BalI	TGGCCA	1 cut(s)	248
BanI	GGYRCC	1 cut(s)	313
BarI	GAAGNNNNNNTAC	2 cut(s)	356, 388
BbsI	GAAGAC	2 cut(s)	12, 259
BccI	CCATC	1 cut(s)	470
BciVI	GTATCC	1 cut(s)	290
BcoDI	GTCTC	2 cut(s)	387, 395
BfaI	CTAG	2 cut(s)	287, 318
BfuI	GTATCC	1 cut(s)	290
Bme18I	GGWCC	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	235
BmiI	GGNNCC	1 cut(s)	315
BmsI	GCATC	1 cut(s)	409
BpiI	GAAGAC	2 cut(s)	12, 259
BpmI	CTGGAG	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	183
BsaI	GGTCTC	1 cut(s)	387
BsaJI	CCNNGG	1 cut(s)	78
BsaXI	ACNNNNNCTCC	2 cut(s)	420, 450
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 244, 552
Bse1I	ACTGG	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	78
BseLI	CCNNNNNNNGG	3 cut(s)	79, 244, 552
BseMII	CTCAG	1 cut(s)	196
BseNI	ACTGG	1 cut(s)	125
BseRI	GAGGAG	1 cut(s)	441
BshFI	GGCC	2 cut(s)	132, 248
BshNI	GGYRCC	1 cut(s)	313
BslI	CCNNNNNNNGG	3 cut(s)	79, 244, 552
BsmAI	GTCTC	2 cut(s)	387, 395
BsnI	GGCC	2 cut(s)	132, 248
Bso31I	GGTCTC	1 cut(s)	387
Bsp143I	GATC	2 cut(s)	260, 333
Bsp19I	CCATGG	1 cut(s)	78
BspANI	GGCC	2 cut(s)	132, 248
BspCNI	CTCAG	1 cut(s)	195
BspHI	TCATGA	1 cut(s)	549
BspLI	GGNNCC	1 cut(s)	315
BspPI	GGATC	2 cut(s)	268, 341
BspT107I	GGYRCC	1 cut(s)	313
BspTNI	GGTCTC	1 cut(s)	387
BsrI	ACTGG	1 cut(s)	125
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	2 cut(s)	260, 333
BssT1I	CCWWGG	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	18
Bst6I	CTCTTC	1 cut(s)	377
BstC8I	GCNNGC	2 cut(s)	130, 162
BstDEI	CTNAG	1 cut(s)	182
BstDSI	CCRYGG	1 cut(s)	78
BstKTI	GATC	2 cut(s)	263, 336
BstMAI	GTCTC	2 cut(s)	387, 395
BstMBI	GATC	2 cut(s)	260, 333
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 542
BstNSI	RCATGY	1 cut(s)	164
BstV2I	GAAGAC	2 cut(s)	12, 259
BsuI	GTATCC	1 cut(s)	290
BsuRI	GGCC	2 cut(s)	132, 248
BtgI	CCRYGG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	190
Cac8I	GCNNGC	2 cut(s)	130, 162
CciI	TCATGA	1 cut(s)	549
Cfr13I	GGNCC	1 cut(s)	235
Csp6I	GTAC	2 cut(s)	340, 364
CviAII	CATG	9 cut(s)	52, 79, 161, 239, 250, 271, 411, 511, 550
CviJI	RGCY	7 cut(s)	132, 248, 329, 455, 472, 489, 529
CviKI_1	RGCY	7 cut(s)	132, 248, 329, 455, 472, 489, 529
CviQI	GTAC	2 cut(s)	340, 364
DdeI	CTNAG	1 cut(s)	182
DpnI	GATC	2 cut(s)	262, 335
DpnII	GATC	2 cut(s)	260, 333
EaeI	YGGCCR	1 cut(s)	246
Eam1104I	CTCTTC	1 cut(s)	377
EarI	CTCTTC	1 cut(s)	377
Eco130I	CCWWGG	1 cut(s)	78
Eco147I	AGGCCT	1 cut(s)	132
Eco31I	GGTCTC	1 cut(s)	387
Eco47I	GGWCC	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	9 cut(s)	55, 82, 164, 242, 253, 274, 414, 514, 553
FatI	CATG	9 cut(s)	51, 78, 160, 238, 249, 270, 410, 510, 549
FspBI	CTAG	2 cut(s)	287, 318
GsuI	CTGGAG	1 cut(s)	444
HaeIII	GGCC	2 cut(s)	132, 248
Hin1II	CATG	9 cut(s)	55, 82, 164, 242, 253, 274, 414, 514, 553
Hpy188III	TCNNGA	1 cut(s)	550
HpyAV	CCTTC	1 cut(s)	293
HpyCH4III	ACNGT	1 cut(s)	18
HpyCH4V	TGCA	2 cut(s)	160, 443
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 542
HpyF3I	CTNAG	1 cut(s)	182
Hsp92II	CATG	9 cut(s)	55, 82, 164, 242, 253, 274, 414, 514, 553
Kzo9I	GATC	2 cut(s)	260, 333
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	8 cut(s)	9, 106, 114, 296, 408, 465, 511, 552
LweI	GCATC	1 cut(s)	409
MaeI	CTAG	2 cut(s)	287, 318
MaeIII	GTNAC	4 cut(s)	177, 413, 521, 562
MalI	GATC	2 cut(s)	262, 335
MboI	GATC	2 cut(s)	260, 333
MboII	GAAGA	4 cut(s)	12, 83, 259, 364
MlsI	TGGCCA	1 cut(s)	248
MluCI	AATT	2 cut(s)	482, 531
MluNI	TGGCCA	1 cut(s)	248
MnlI	CCTC	6 cut(s)	52, 116, 235, 419, 546, 557
Mox20I	TGGCCA	1 cut(s)	248
MroXI	GAANNNNTTC	1 cut(s)	87
MscI	TGGCCA	1 cut(s)	248
MslI	CAYNNNNRTG	1 cut(s)	409
Msp20I	TGGCCA	1 cut(s)	248
MwoI	GCNNNNNNNGC	2 cut(s)	221, 542
NcoI	CCATGG	1 cut(s)	78
NdeII	GATC	2 cut(s)	260, 333
NlaIII	CATG	9 cut(s)	55, 82, 164, 242, 253, 274, 414, 514, 553
NlaIV	GGNNCC	1 cut(s)	315
NmuCI	GTSAC	1 cut(s)	413
NspI	RCATGY	1 cut(s)	164
PaeI	GCATGC	1 cut(s)	164
PagI	TCATGA	1 cut(s)	549
PceI	AGGCCT	1 cut(s)	132
PdmI	GAANNNNTTC	1 cut(s)	87
PflMI	CCANNNNNTGG	1 cut(s)	244
PspN4I	GGNNCC	1 cut(s)	315
PspPI	GGNCC	1 cut(s)	235
PsrI	GAACNNNNNNTAC	2 cut(s)	332, 364
RsaI	GTAC	2 cut(s)	341, 365
RsaNI	GTAC	2 cut(s)	340, 364
RseI	CAYNNNNRTG	1 cut(s)	409
Sau3AI	GATC	2 cut(s)	260, 333
Sau96I	GGNCC	1 cut(s)	235
SetI	ASST	8 cut(s)	75, 246, 315, 331, 345, 457, 491, 523
SfaNI	GCATC	1 cut(s)	409
SinI	GGWCC	1 cut(s)	235
SmiMI	CAYNNNNRTG	1 cut(s)	409
SmlI	CTYRAG	1 cut(s)	198
SmoI	CTYRAG	1 cut(s)	198
SphI	GCATGC	1 cut(s)	164
Sse9I	AATT	2 cut(s)	482, 531
SseBI	AGGCCT	1 cut(s)	132
SspMI	CTAG	2 cut(s)	287, 318
StuI	AGGCCT	1 cut(s)	132
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	18
TaqII	GACCGA	1 cut(s)	253
TasI	AATT	2 cut(s)	482, 531
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	1 cut(s)	413
Tsp45I	GTSAC	1 cut(s)	413
TspDTI	ATGAA	3 cut(s)	40, 259, 499
TspRI	CASTG	1 cut(s)	190
Van91I	CCANNNNNTGG	1 cut(s)	244
VpaK11BI	GGWCC	1 cut(s)	235
XceI	RCATGY	1 cut(s)	164
XmnI	GAANNNNTTC	1 cut(s)	87
XspI	CTAG	2 cut(s)	287, 318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.