Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0023119

Physical Location & Seq

Genomic Coordinates Reverse (-)

31898751 .. 31903467

Gene Structure 4717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0280600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGTTGAAGAGACTGCAATTACAAGAACAATGCCAGCTACAGGATTTGAGCCAAGTCATTGATCATCTGGGGTGCCACTGCTTTGCTCCCGACGATTCTCTCGTCTCCAAATCCGCATACTACGACCTCCAACTCGCTAGAGAGGAAATGTGCAGGGAACGACTGCGTTACTTGGACGCCATGGCAATTTATAGTGAGGCAATTGCAATGGTGGAAGATTATCACCAAGGCTGGGGGAACCCTCCTCAGCTGTTTGAGACGTTGGAGCATCTTATGATCACTGCGGAAGCCACTCAAAGGTTGGGGCTTCCTCTGCTCTCTAAAGACGGTGATATTCATGAGGAAGAAATTGAAAGATGCAGCATAGTGTCACAAAGTTCCCTCGACAGTACTTGTACCAGTTTCACAGTCGGGTCAAGTTCTAACTCTCCAAATTATAGTGGTGCAAATAGCACAGTTAGTGCAGCAAACAACAATCTTTGTCTCAGTGCTACTTCAGTCGAGGAACCTGGACTTGGAGGCGTTCCCAATCGCTTTCTTGGAATTACACCTGCATATTTATGGAAAACACAGCTTCAACAAATCCCTTTCAACATGGATCTGGCAGAATACCGGCTGTGTTTTTCCGATGAGATTGAGGCTCGTTTGCAAGCTAAATGTGATAAGTTAGCCGACGCCTTTGTAATGGAAGACATAGACTGGTCGTCATCCGGACAGGAAAATACAAGTGATCAGGTAAAGTCAATAACTGAGGAGCTGGAAAGGGAGGAAGCAGCTCTGAAGGAAGATCTGTATTCAGCAGAAAGAAGATTTACTGAATACTACAATGTTTTAGAGCAGATATTGGGAGTTCTTATAAAGCTGGTCAGAAATTTGAAGTTGCAACATCAACACAAATATGTTACTCGCCTTCATGAGTATCAGAGTGTTGATGCTCACTTCAATAAAATTGCAGGGCAGTGCCGTGATATTCTAAAGGTAATAGGAATGCTTACAGTTGTCCATTGGTTTCCTAATGCTAAACTAATCAACATTCCTCCACAGAAGTTGGAAAATATGCAATGGACGATCCAGCAAGTAGAAATGGACCTGAAACGCGTCCCAGATCGAACTACCCTAATGCTTGGAATTTGTTTCTTTTCCTGCAGTTCGCTGAGTGTTCCCATTAGTTGTGATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009965 GO:0010016 GO:0010051 GO:0010154 GO:0010222 GO:0010588 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0042623 GO:0042626 GO:0042802 GO:0042803 GO:0043492 GO:0044425 GO:0044464 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071944 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko01523 ko02010 ko04976 map01523 map02010 map04976

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

393

Amino Acids

44.58

Weight (kDa)

4.88

Isoelectric Point (pI)

50.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAUS4	PF14735	169 - 300	1e-26	HAUS augmin-like complex subunit 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0023119)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005966.1_g000023 Rmu_sc0039182.1_g000001
rosa_rugosa	Rorug05G0280600
rosa_samantha	Rh5CG388300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	857
AarI	CACCTGC	1 cut(s)	559
Acc36I	ACCTGC	1 cut(s)	559
AccB1I	GGYRCC	1 cut(s)	72
AccII	CGCG	1 cut(s)	1098
AccIII	TCCGGA	1 cut(s)	710
AciI	CCGC	2 cut(s)	114, 284
AclWI	GGATC	2 cut(s)	606, 1063
AcsI	RAATTY	2 cut(s)	871, 1128
AcuI	CTGAAG	2 cut(s)	480, 800
AcyI	GRCGYC	2 cut(s)	177, 675
AfaI	GTAC	2 cut(s)	391, 397
AfiI	CCNNNNNNNGG	4 cut(s)	40, 232, 297, 515
AflIII	ACRYGT	1 cut(s)	1096
AgsI	TTSAA	6 cut(s)	7, 353, 578, 592, 877, 943
AhdI	GACNNNNNGTC	1 cut(s)	703
AjnI	CCWGG	1 cut(s)	508
AjuI	GAANNNNNNNTTGG	2 cut(s)	498, 530
AluBI	AGCT	7 cut(s)	37, 250, 574, 653, 757, 776, 862
AluI	AGCT	7 cut(s)	37, 250, 574, 653, 757, 776, 862
Alw26I	GTCTC	4 cut(s)	4, 109, 251, 488
AlwI	GGATC	2 cut(s)	606, 1063
Aor13HI	TCCGGA	1 cut(s)	710
ApeKI	GCWGC	3 cut(s)	360, 464, 773
ApoI	RAATTY	2 cut(s)	871, 1128
AspS9I	GGNCC	1 cut(s)	1087
AsuHPI	GGTGA	2 cut(s)	215, 341
AvaII	GGWCC	1 cut(s)	1087
BanI	GGYRCC	1 cut(s)	72
BbsI	GAAGAC	1 cut(s)	696
BbvCI	CCTCAGC	1 cut(s)	246
BbvI	GCAGC	3 cut(s)	372, 476, 785
BceAI	ACGGC	1 cut(s)	948
BciT130I	CCWGG	1 cut(s)	510
BclI	TGATCA	3 cut(s)	61, 276, 730
BcoDI	GTCTC	4 cut(s)	4, 109, 251, 488
BfaI	CTAG	1 cut(s)	138
BfmI	CTRYAG	2 cut(s)	38, 1144
BfuAI	ACCTGC	1 cut(s)	559
BglII	AGATCT	1 cut(s)	787
BisI	GCNGC	3 cut(s)	361, 465, 774
BlsI	GCNGC	3 cut(s)	362, 466, 775
BmcAI	AGTACT	1 cut(s)	391
Bme1390I	CCNGG	1 cut(s)	510
Bme18I	GGWCC	1 cut(s)	1087
BmeRI	GACNNNNNGTC	1 cut(s)	703
BmgT120I	GGNCC	1 cut(s)	1087
BmiI	GGNNCC	3 cut(s)	74, 239, 507
BmrFI	CCNGG	1 cut(s)	510
BmsI	GCATC	4 cut(s)	277, 347, 922, 1165
BpiI	GAAGAC	1 cut(s)	696
Bpu10I	CCTNAGC	1 cut(s)	246
BsaHI	GRCGYC	2 cut(s)	177, 675
BsaJI	CCNNGG	2 cut(s)	180, 226
BsaWI	WCCGGW	1 cut(s)	710
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 232, 297, 515
Bse118I	RCCGGY	1 cut(s)	612
Bse1I	ACTGG	2 cut(s)	399, 704
Bse3DI	GCAATG	2 cut(s)	213, 1067
BseAI	TCCGGA	1 cut(s)	710
BseBI	CCWGG	1 cut(s)	510
BseDI	CCNNGG	2 cut(s)	180, 226
BseGI	GGATG	1 cut(s)	707
BseLI	CCNNNNNNNGG	4 cut(s)	40, 232, 297, 515
BseMI	GCAATG	2 cut(s)	213, 1067
BseMII	CTCAG	4 cut(s)	260, 499, 741, 1145
BseNI	ACTGG	2 cut(s)	399, 704
BseRI	GAGGAG	2 cut(s)	234, 767
BseXI	GCAGC	3 cut(s)	372, 476, 785
BseYI	CCCAGC	1 cut(s)	231
BsgI	GTGCAG	2 cut(s)	172, 483
Bsh1236I	CGCG	1 cut(s)	1098
BshNI	GGYRCC	1 cut(s)	72
BsiSI	CCGG	2 cut(s)	613, 711
BslFI	GGGAC	1 cut(s)	1085
BslI	CCNNNNNNNGG	4 cut(s)	40, 232, 297, 515
BsmAI	GTCTC	4 cut(s)	4, 109, 251, 488
BsmBI	CGTCTC	2 cut(s)	109, 251
BsmFI	GGGAC	1 cut(s)	1085
BsmI	GAATGC	1 cut(s)	993
Bsp13I	TCCGGA	1 cut(s)	710
Bsp143I	GATC	7 cut(s)	61, 276, 598, 730, 787, 1068, 1105
Bsp19I	CCATGG	1 cut(s)	180
BspACI	CCGC	2 cut(s)	114, 284
BspCNI	CTCAG	4 cut(s)	259, 498, 742, 1146
BspEI	TCCGGA	1 cut(s)	710
BspFNI	CGCG	1 cut(s)	1098
BspHI	TCATGA	2 cut(s)	337, 913
BspLI	GGNNCC	3 cut(s)	74, 239, 507
BspMAI	CTGCAG	1 cut(s)	1148
BspMI	ACCTGC	1 cut(s)	559
BspPI	GGATC	2 cut(s)	606, 1063
BspT107I	GGYRCC	1 cut(s)	72
BsrDI	GCAATG	2 cut(s)	213, 1067
BsrFI	RCCGGY	1 cut(s)	612
BsrI	ACTGG	2 cut(s)	399, 704
BssAI	RCCGGY	1 cut(s)	612
BssECI	CCNNGG	2 cut(s)	180, 226
BssMI	GATC	7 cut(s)	61, 276, 598, 730, 787, 1068, 1105
BssNI	GRCGYC	2 cut(s)	177, 675
BssT1I	CCWWGG	2 cut(s)	180, 226
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	5 cut(s)	329, 389, 409, 457, 997
Bst6I	CTCTTC	1 cut(s)	2
BstACI	GRCGYC	2 cut(s)	177, 675
BstC8I	GCNNGC	2 cut(s)	35, 651
BstDEI	CTNAG	5 cut(s)	246, 485, 750, 1154, 1179
BstDSI	CCRYGG	1 cut(s)	180
BstF5I	GGATG	1 cut(s)	707
BstFNI	CGCG	1 cut(s)	1098
BstKTI	GATC	7 cut(s)	64, 279, 601, 733, 790, 1071, 1108
BstMAI	GTCTC	4 cut(s)	4, 109, 251, 488
BstMBI	GATC	7 cut(s)	61, 276, 598, 730, 787, 1068, 1105
BstMWI	GCNNNNNNNGC	1 cut(s)	313
BstNI	CCWGG	1 cut(s)	510
BstSCI	CCNGG	1 cut(s)	508
BstSFI	CTRYAG	2 cut(s)	38, 1144
BstUI	CGCG	1 cut(s)	1098
BstV1I	GCAGC	3 cut(s)	372, 476, 785
BstV2I	GAAGAC	1 cut(s)	696
BstX2I	RGATCY	2 cut(s)	598, 787
BstYI	RGATCY	2 cut(s)	598, 787
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	707
BtsI	GCAGTG	3 cut(s)	76, 279, 965
BtsIMutI	CAGTG	4 cut(s)	76, 279, 493, 965
BveI	ACCTGC	1 cut(s)	559
Cac8I	GCNNGC	2 cut(s)	35, 651
CciI	TCATGA	2 cut(s)	337, 913
Cfr10I	RCCGGY	1 cut(s)	612
Cfr13I	GGNCC	1 cut(s)	1087
CseI	GACGC	3 cut(s)	185, 683, 1087
Csp6I	GTAC	2 cut(s)	390, 396
CspCI	CAANNNNNGTGG	2 cut(s)	1029, 1064
CviAII	CATG	4 cut(s)	181, 338, 595, 914
CviQI	GTAC	2 cut(s)	390, 396
DdeI	CTNAG	5 cut(s)	246, 485, 750, 1154, 1179
DpnI	GATC	7 cut(s)	63, 278, 600, 732, 789, 1070, 1107
DpnII	GATC	7 cut(s)	61, 276, 598, 730, 787, 1068, 1105
DriI	GACNNNNNGTC	1 cut(s)	703
Eam1104I	CTCTTC	1 cut(s)	2
Eam1105I	GACNNNNNGTC	1 cut(s)	703
EarI	CTCTTC	1 cut(s)	2
Eco130I	CCWWGG	2 cut(s)	180, 226
Eco47I	GGWCC	1 cut(s)	1087
Eco57I	CTGAAG	2 cut(s)	480, 800
EcoRII	CCWGG	1 cut(s)	508
EcoT14I	CCWWGG	2 cut(s)	180, 226
ErhI	CCWWGG	2 cut(s)	180, 226
Esp3I	CGTCTC	2 cut(s)	109, 251
FaeI	CATG	4 cut(s)	184, 341, 598, 917
FaqI	GGGAC	1 cut(s)	1085
FatI	CATG	4 cut(s)	180, 337, 594, 913
FbaI	TGATCA	3 cut(s)	61, 276, 730
Fnu4HI	GCNGC	3 cut(s)	361, 465, 774
FokI	GGATG	1 cut(s)	694
Fsp4HI	GCNGC	3 cut(s)	361, 465, 774
FspBI	CTAG	1 cut(s)	138
GluI	GCNGC	3 cut(s)	361, 465, 774
GsaI	CCCAGC	1 cut(s)	235
HapII	CCGG	2 cut(s)	613, 711
HgaI	GACGC	3 cut(s)	185, 683, 1087
Hin1I	GRCGYC	2 cut(s)	177, 675
Hin1II	CATG	4 cut(s)	184, 341, 598, 917
HinfI	GANTC	1 cut(s)	95
HpaII	CCGG	2 cut(s)	613, 711
HphI	GGTGA	2 cut(s)	215, 341
Hpy188I	TCNGA	4 cut(s)	628, 780, 869, 924
Hpy188III	TCNNGA	4 cut(s)	89, 338, 711, 914
Hpy99I	CGWCG	2 cut(s)	95, 677
HpyAV	CCTTC	2 cut(s)	775, 920
HpyCH4III	ACNGT	5 cut(s)	329, 389, 409, 457, 997
HpyCH4IV	ACGT	1 cut(s)	260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	313
HpyF3I	CTNAG	5 cut(s)	246, 485, 750, 1154, 1179
HpySE526I	ACGT	1 cut(s)	260
Hsp92I	GRCGYC	2 cut(s)	177, 675
Hsp92II	CATG	4 cut(s)	184, 341, 598, 917
Kpn2I	TCCGGA	1 cut(s)	710
Ksp22I	TGATCA	3 cut(s)	61, 276, 730
Kzo9I	GATC	7 cut(s)	61, 276, 598, 730, 787, 1068, 1105
LmnI	GCTCC	3 cut(s)	91, 265, 754
Lsp1109I	GCAGC	3 cut(s)	372, 476, 785
LweI	GCATC	4 cut(s)	277, 347, 922, 1165
MaeI	CTAG	1 cut(s)	138
MaeII	ACGT	1 cut(s)	260
MaeIII	GTNAC	3 cut(s)	167, 369, 901
MalI	GATC	7 cut(s)	63, 278, 600, 732, 789, 1070, 1107
MboI	GATC	7 cut(s)	61, 276, 598, 730, 787, 1068, 1105
MboII	GAAGA	6 cut(s)	19, 227, 356, 701, 797, 819
MfeI	CAATTG	1 cut(s)	201
MflI	RGATCY	2 cut(s)	598, 787
MluCI	AATT	9 cut(s)	17, 186, 201, 348, 433, 543, 871, 948, 1128
MluI	ACGCGT	1 cut(s)	1096
MmeI	TCCRAC	3 cut(s)	154, 243, 1029
MroI	TCCGGA	1 cut(s)	710
MslI	CAYNNNNRTG	2 cut(s)	559, 897
MspA1I	CMGCKG	1 cut(s)	250
MspI	CCGG	2 cut(s)	613, 711
MspR9I	CCNGG	1 cut(s)	510
MunI	CAATTG	1 cut(s)	201
Mva1269I	GAATGC	1 cut(s)	993
MvaI	CCWGG	1 cut(s)	510
MvnI	CGCG	1 cut(s)	1098
MwoI	GCNNNNNNNGC	1 cut(s)	313
NcoI	CCATGG	1 cut(s)	180
NdeII	GATC	7 cut(s)	61, 276, 598, 730, 787, 1068, 1105
NlaIII	CATG	4 cut(s)	184, 341, 598, 917
NlaIV	GGNNCC	3 cut(s)	74, 239, 507
NmuCI	GTSAC	1 cut(s)	369
PagI	TCATGA	2 cut(s)	337, 913
PaqCI	CACCTGC	1 cut(s)	559
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	993
PfeI	GAWTC	1 cut(s)	95
PkrI	GCNGC	3 cut(s)	362, 466, 775
PsiI	TTATAA	1 cut(s)	857
Psp6I	CCWGG	1 cut(s)	508
PspFI	CCCAGC	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	508
PspN4I	GGNNCC	3 cut(s)	74, 239, 507
PspPI	GGNCC	1 cut(s)	1087
PstI	CTGCAG	1 cut(s)	1148
PsuI	RGATCY	2 cut(s)	598, 787
PvuII	CAGCTG	1 cut(s)	250
RsaI	GTAC	2 cut(s)	391, 397
RsaNI	GTAC	2 cut(s)	390, 396
RseI	CAYNNNNRTG	2 cut(s)	559, 897
SatI	GCNGC	3 cut(s)	361, 465, 774
Sau3AI	GATC	7 cut(s)	61, 276, 598, 730, 787, 1068, 1105
Sau96I	GGNCC	1 cut(s)	1087
ScaI	AGTACT	1 cut(s)	391
ScrFI	CCNGG	1 cut(s)	510
SfaNI	GCATC	4 cut(s)	277, 347, 922, 1165
SfcI	CTRYAG	2 cut(s)	38, 1144
SinI	GGWCC	1 cut(s)	1087
SmiMI	CAYNNNNRTG	2 cut(s)	559, 897
Sse9I	AATT	9 cut(s)	17, 186, 201, 348, 433, 543, 871, 948, 1128
SsiI	CCGC	2 cut(s)	114, 284
SspMI	CTAG	1 cut(s)	138
StyD4I	CCNGG	1 cut(s)	508
StyI	CCWWGG	2 cut(s)	180, 226
TaaI	ACNGT	5 cut(s)	329, 389, 409, 457, 997
TaiI	ACGT	1 cut(s)	263
TaqI	TCGA	3 cut(s)	384, 501, 1108
TasI	AATT	9 cut(s)	17, 186, 201, 348, 433, 543, 871, 948, 1128
TatI	WGTACW	1 cut(s)	389
TfiI	GAWTC	1 cut(s)	95
TscAI	CASTG	4 cut(s)	83, 286, 493, 965
TseFI	GTSAC	1 cut(s)	369
TseI	GCWGC	3 cut(s)	360, 464, 773
Tsp45I	GTSAC	1 cut(s)	369
TspDTI	ATGAA	2 cut(s)	326, 902
TspRI	CASTG	4 cut(s)	83, 286, 493, 965
VpaK11BI	GGWCC	1 cut(s)	1087
XapI	RAATTY	2 cut(s)	871, 1128
XcmI	CCANNNNNNNNNTGG	1 cut(s)	298
XspI	CTAG	1 cut(s)	138
ZrmI	AGTACT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.