Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041908.1

Orthogroup ID

OG0014667

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1187

Gene Structure 1186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041908.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1186 bp

atgtgcagcaaaaccttcacattctgctctcttgtcttcctcatctccatcactctcaacactgttgcagctgctgcttcatcatgccccatagatctgagctacgtcgaaaccttcccatgggacacctccctctgcatcgccccgaacggcacacactgctgccagaccctcctcagcctcttcggcataggcctggcccaacacctcaagcaaacctccatgttccagctccccaactccaccgcctccgctgcttgcctctctgatttccagtccaagctctcatctttgtccctccagcccaccctagtccccctctgcttcccgaacaccacccagttcgtctccagccccgccagctgtgccggaatcctcaccgtccaggactggacggaaaaggtgggggccatcagcgctatagacacatcgtgcaaaggagatctggaggggctcaccaagtgcagctcttgccttgatgcagggttgagtgtgactaacctgttgagtgggttgggcccaaacagcaccaaatgtttctactttactgtgttgtatgctgcagggattgtgaaccagttgggcccagatgatccaagaactggggcttgcattctgggcttgcctctgaccacctcacctgacaagaagagttcaagtcaggtgagcaggaagactctgctgaaatgggtgtttggggttttgggggctattcttgggattttgcttgctgttggggttatagtcatgtacaggaggtatgacttgaaagggaggcaaaatgctaggcatgatgagtatgtgagtagctttagagctagtttgttgcctaattctggtgcaaagtggtttgggatttcggagcttgagagagccactgatgggttctctcagaagaacatgataggccaaggtgggtatggggttgtgtacaagggctcacttgctgatgggactcttgttgcagtgaagcaaattcttgatatggagtctttggattcgaaaggggatgaggagttttcgaatgaggtagagattataagcaaaatccggcataggaatctgctctcgcttagagggtgttgtgttactagtgatgattttaaagggaaaaggaggttcttggtttatgatttcatgtcaaatgggaatctgagtgaccacttgagcaatagtaataggagat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

395

Amino Acids

42.57

Weight (kDa)

8.09

Isoelectric Point (pI)

36.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014667)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27700
malus_domestica	MD00G1063500.v1.1 MD15G1343400.v1.1
prunus_persica	Prupe.1G490800_v2.0.a1
pyrus_communis	pycom15g30600 pycom15g30610
rosa_chinensis	RchiOBHm_Chr6g0296571
rosa_laevigata	RLG00000011681
rosa_multiflora	Rmu_sc0001741.1_g000023 Rmu_sc0041908.1_g000001
rosa_roxburghii	Rroxscaffold_7G00171430 Rroxscaffold_7G00178690
rosa_rugosa	Rorug06G0263200
rosa_samantha	Rh6AG374900 Rh6CG388400 Rh6DG375800
rosa_wichuraiana	Rw6G032680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1040
AccB7I	CCANNNNNTGG	1 cut(s)	602
AciI	CCGC	3 cut(s)	246, 252, 357
AclWI	GGATC	1 cut(s)	587
AcsI	RAATTY	1 cut(s)	975
AdeI	CACNNNGTG	2 cut(s)	432, 462
AfaI	GTAC	2 cut(s)	752, 932
AfeI	AGCGCT	1 cut(s)	418
AfiI	CCNNNNNNNGG	4 cut(s)	120, 602, 836, 882
AgsI	TTSAA	2 cut(s)	657, 769
AhlI	ACTAGT	1 cut(s)	1091
AjnI	CCWGG	2 cut(s)	195, 384
AluBI	AGCT	9 cut(s)	71, 102, 232, 283, 363, 468, 810, 818, 865
AluI	AGCT	9 cut(s)	71, 102, 232, 283, 363, 468, 810, 818, 865
Alw26I	GTCTC	1 cut(s)	352
AlwI	GGATC	1 cut(s)	587
AlwNI	CAGNNNCTG	1 cut(s)	74
Aor51HI	AGCGCT	1 cut(s)	418
AoxI	GGCC	6 cut(s)	193, 198, 408, 517, 583, 907
ApaI	GGGCCC	2 cut(s)	521, 587
ApeKI	GCWGC	8 cut(s)	6, 68, 71, 74, 162, 254, 465, 560
ApoI	RAATTY	1 cut(s)	975
AspLEI	GCGC	1 cut(s)	419
AspS9I	GGNCC	6 cut(s)	199, 408, 517, 518, 583, 584
AsuHPI	GGTGA	4 cut(s)	370, 448, 630, 676
AsuII	TTCGAA	2 cut(s)	1001, 1022
BaeGI	GKGCMC	2 cut(s)	521, 587
BanII	GRGCYC	4 cut(s)	456, 521, 587, 941
BbsI	GAAGAC	2 cut(s)	28, 680
BbvCI	CCTCAGC	1 cut(s)	176
BbvI	GCAGC	8 cut(s)	18, 58, 61, 80, 149, 241, 477, 547
BccI	CCATC	4 cut(s)	56, 419, 875, 944
BceAI	ACGGC	1 cut(s)	166
BciT130I	CCWGG	2 cut(s)	197, 386
BcoDI	GTCTC	1 cut(s)	352
BcuI	ACTAGT	1 cut(s)	1091
BfaI	CTAG	4 cut(s)	311, 786, 819, 1092
BfmI	CTRYAG	2 cut(s)	420, 561
BfoI	RGCGCY	1 cut(s)	420
BglI	GCCNNNNNGGC	1 cut(s)	186
BglII	AGATCT	2 cut(s)	94, 442
BisI	GCNGC	8 cut(s)	7, 69, 72, 75, 163, 255, 466, 561
BlsI	GCNGC	8 cut(s)	8, 70, 73, 76, 164, 256, 467, 562
Bme1390I	CCNGG	2 cut(s)	197, 386
BmgT120I	GGNCC	6 cut(s)	199, 408, 517, 518, 583, 584
BmiI	GGNNCC	3 cut(s)	409, 519, 585
BmrFI	CCNGG	2 cut(s)	197, 386
BmrI	ACTGGG	2 cut(s)	334, 612
BmsI	GCATC	2 cut(s)	147, 469
BmuI	ACTGGG	2 cut(s)	334, 612
BpiI	GAAGAC	2 cut(s)	28, 680
BpmI	CTGGAG	3 cut(s)	284, 334, 467
Bpu10I	CCTNAGC	1 cut(s)	176
Bpu14I	TTCGAA	2 cut(s)	1001, 1022
BpuEI	CTTGAG	3 cut(s)	194, 887, 1186
BsaJI	CCNNGG	2 cut(s)	119, 910
Bsc4I	CCNNNNNNNGG	4 cut(s)	120, 602, 836, 882
Bse1I	ACTGG	5 cut(s)	274, 340, 395, 577, 607
BseBI	CCWGG	2 cut(s)	197, 386
BseDI	CCNNGG	2 cut(s)	119, 910
BseGI	GGATG	1 cut(s)	1015
BseLI	CCNNNNNNNGG	4 cut(s)	120, 602, 836, 882
BseMII	CTCAG	4 cut(s)	89, 190, 905, 1145
BseNI	ACTGG	5 cut(s)	274, 340, 395, 577, 607
BseRI	GAGGAG	2 cut(s)	164, 1028
BseSI	GKGCMC	2 cut(s)	521, 587
BseXI	GCAGC	8 cut(s)	18, 58, 61, 80, 149, 241, 477, 547
BsgI	GTGCAG	2 cut(s)	25, 484
BshFI	GGCC	6 cut(s)	195, 200, 410, 519, 585, 909
BsiSI	CCGG	2 cut(s)	369, 1051
BslFI	GGGAC	4 cut(s)	137, 280, 299, 967
BslI	CCNNNNNNNGG	4 cut(s)	120, 602, 836, 882
BsmAI	GTCTC	1 cut(s)	352
BsmBI	CGTCTC	1 cut(s)	352
BsmFI	GGGAC	4 cut(s)	137, 280, 299, 967
BsmI	GAATGC	1 cut(s)	612
BsnI	GGCC	6 cut(s)	195, 200, 410, 519, 585, 909
Bsp119I	TTCGAA	2 cut(s)	1001, 1022
Bsp120I	GGGCCC	2 cut(s)	517, 583
Bsp1286I	GDGCHC	4 cut(s)	456, 521, 587, 941
Bsp1407I	TGTACA	2 cut(s)	750, 930
Bsp143I	GATC	3 cut(s)	94, 442, 592
Bsp19I	CCATGG	1 cut(s)	119
BspACI	CCGC	3 cut(s)	246, 252, 357
BspANI	GGCC	6 cut(s)	195, 200, 410, 519, 585, 909
BspCNI	CTCAG	4 cut(s)	90, 189, 904, 1146
BspLI	GGNNCC	3 cut(s)	409, 519, 585
BspMAI	CTGCAG	1 cut(s)	565
BspPI	GGATC	1 cut(s)	587
BspT104I	TTCGAA	2 cut(s)	1001, 1022
BsrGI	TGTACA	2 cut(s)	750, 930
BsrI	ACTGG	5 cut(s)	274, 340, 395, 577, 607
BssECI	CCNNGG	2 cut(s)	119, 910
BssMI	GATC	3 cut(s)	94, 442, 592
BssT1I	CCWWGG	2 cut(s)	119, 910
Bst2UI	CCWGG	2 cut(s)	197, 386
Bst4CI	ACNGT	3 cut(s)	64, 382, 550
Bst6I	CTCTTC	2 cut(s)	188, 644
BstAPI	GCANNNNNTGC	3 cut(s)	74, 159, 471
BstAUI	TGTACA	2 cut(s)	750, 930
BstBI	TTCGAA	2 cut(s)	1001, 1022
BstC8I	GCNNGC	5 cut(s)	259, 361, 610, 623, 729
BstDEI	CTNAG	5 cut(s)	98, 176, 891, 1073, 1154
BstDSI	CCRYGG	1 cut(s)	119
BstF5I	GGATG	1 cut(s)	1015
BstH2I	RGCGCY	1 cut(s)	420
BstHHI	GCGC	1 cut(s)	419
BstKTI	GATC	3 cut(s)	97, 445, 595
BstMAI	GTCTC	1 cut(s)	352
BstMBI	GATC	3 cut(s)	94, 442, 592
BstNI	CCWGG	2 cut(s)	197, 386
BstSCI	CCNGG	2 cut(s)	195, 384
BstSFI	CTRYAG	2 cut(s)	420, 561
BstSLI	GKGCMC	2 cut(s)	521, 587
BstV1I	GCAGC	8 cut(s)	18, 58, 61, 80, 149, 241, 477, 547
BstV2I	GAAGAC	2 cut(s)	28, 680
BstX2I	RGATCY	2 cut(s)	94, 442
BstYI	RGATCY	2 cut(s)	94, 442
BsuRI	GGCC	6 cut(s)	195, 200, 410, 519, 585, 909
BtgI	CCRYGG	1 cut(s)	119
BtgZI	GCGATG	1 cut(s)	124
BtsCI	GGATG	1 cut(s)	1015
BtsI	GCAGTG	2 cut(s)	157, 972
BtsIMutI	CAGTG	4 cut(s)	60, 157, 876, 972
Cac8I	GCNNGC	5 cut(s)	259, 361, 610, 623, 729
CaiI	CAGNNNCTG	1 cut(s)	74
CfoI	GCGC	1 cut(s)	419
Cfr13I	GGNCC	6 cut(s)	199, 408, 517, 518, 583, 584
Csp6I	GTAC	2 cut(s)	751, 931
CviAII	CATG	7 cut(s)	84, 120, 223, 748, 791, 901, 1138
CviQI	GTAC	2 cut(s)	751, 931
DdeI	CTNAG	5 cut(s)	98, 176, 891, 1073, 1154
DpnI	GATC	3 cut(s)	96, 444, 594
DpnII	GATC	3 cut(s)	94, 442, 592
DraI	TTTAAA	1 cut(s)	1105
DraIII	CACNNNGTG	2 cut(s)	432, 462
Eam1104I	CTCTTC	2 cut(s)	188, 644
EarI	CTCTTC	2 cut(s)	188, 644
Eco130I	CCWWGG	2 cut(s)	119, 910
Eco147I	AGGCCT	1 cut(s)	195
Eco24I	GRGCYC	4 cut(s)	456, 521, 587, 941
Eco47III	AGCGCT	1 cut(s)	418
EcoRII	CCWGG	2 cut(s)	195, 384
EcoT14I	CCWWGG	2 cut(s)	119, 910
EcoT38I	GRGCYC	4 cut(s)	456, 521, 587, 941
ErhI	CCWWGG	2 cut(s)	119, 910
Esp3I	CGTCTC	1 cut(s)	352
FaeI	CATG	7 cut(s)	87, 123, 226, 751, 794, 904, 1141
FaqI	GGGAC	4 cut(s)	137, 280, 299, 967
FatI	CATG	7 cut(s)	83, 119, 222, 747, 790, 900, 1137
FauI	CCCGC	1 cut(s)	364
Fnu4HI	GCNGC	8 cut(s)	7, 69, 72, 75, 163, 255, 466, 561
FokI	GGATG	1 cut(s)	1022
FriOI	GRGCYC	4 cut(s)	456, 521, 587, 941
Fsp4HI	GCNGC	8 cut(s)	7, 69, 72, 75, 163, 255, 466, 561
FspBI	CTAG	4 cut(s)	311, 786, 819, 1092
GlaI	GCGC	1 cut(s)	418
GluI	GCNGC	8 cut(s)	7, 69, 72, 75, 163, 255, 466, 561
GsuI	CTGGAG	3 cut(s)	284, 334, 467
HaeII	RGCGCY	1 cut(s)	420
HaeIII	GGCC	6 cut(s)	195, 200, 410, 519, 585, 909
HapII	CCGG	2 cut(s)	369, 1051
HhaI	GCGC	1 cut(s)	419
Hin1II	CATG	7 cut(s)	87, 123, 226, 751, 794, 904, 1141
Hin6I	GCGC	1 cut(s)	417
HinP1I	GCGC	1 cut(s)	417
HinfI	GANTC	7 cut(s)	372, 676, 955, 989, 998, 1060, 1150
HpaII	CCGG	2 cut(s)	369, 1051
HphI	GGTGA	4 cut(s)	370, 448, 630, 676
Hpy166II	GTNNAC	2 cut(s)	574, 931
Hpy188I	TCNGA	6 cut(s)	99, 268, 630, 862, 894, 1155
Hpy188III	TCNNGA	3 cut(s)	328, 446, 980
Hpy8I	GTNNAC	2 cut(s)	574, 931
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	2 cut(s)	25, 124
HpyCH4III	ACNGT	3 cut(s)	64, 382, 550
HpyCH4IV	ACGT	1 cut(s)	105
HpyF3I	CTNAG	5 cut(s)	98, 176, 891, 1073, 1154
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	7 cut(s)	87, 123, 226, 751, 794, 904, 1141
HspAI	GCGC	1 cut(s)	417
Kzo9I	GATC	3 cut(s)	94, 442, 592
LmnI	GCTCC	2 cut(s)	237, 862
Lsp1109I	GCAGC	8 cut(s)	18, 58, 61, 80, 149, 241, 477, 547
LweI	GCATC	2 cut(s)	147, 469
MaeI	CTAG	4 cut(s)	311, 786, 819, 1092
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	3 cut(s)	493, 1087, 1157
MalI	GATC	3 cut(s)	96, 444, 594
MboI	GATC	3 cut(s)	94, 442, 592
MboII	GAAGA	5 cut(s)	28, 175, 661, 685, 907
MflI	RGATCY	2 cut(s)	94, 442
MhlI	GDGCHC	4 cut(s)	456, 521, 587, 941
MluCI	AATT	2 cut(s)	832, 975
MlyI	GAGTC	3 cut(s)	670, 949, 998
MseI	TTAA	1 cut(s)	1104
MspA1I	CMGCKG	3 cut(s)	71, 254, 363
MspI	CCGG	2 cut(s)	369, 1051
MspR9I	CCNGG	2 cut(s)	197, 386
Mva1269I	GAATGC	1 cut(s)	612
MvaI	CCWGG	2 cut(s)	197, 386
NcoI	CCATGG	1 cut(s)	119
NdeII	GATC	3 cut(s)	94, 442, 592
NlaIII	CATG	7 cut(s)	87, 123, 226, 751, 794, 904, 1141
NlaIV	GGNNCC	3 cut(s)	409, 519, 585
NmuCI	GTSAC	2 cut(s)	493, 1157
NspV	TTCGAA	2 cut(s)	1001, 1022
PceI	AGGCCT	1 cut(s)	195
PctI	GAATGC	1 cut(s)	612
PfeI	GAWTC	4 cut(s)	372, 998, 1060, 1150
PflMI	CCANNNNNTGG	1 cut(s)	602
PfoI	TCCNGGA	1 cut(s)	384
PkrI	GCNGC	8 cut(s)	8, 70, 73, 76, 164, 256, 467, 562
PleI	GAGTC	3 cut(s)	670, 949, 997
PpsI	GAGTC	3 cut(s)	670, 949, 997
PsiI	TTATAA	1 cut(s)	1040
Psp6I	CCWGG	2 cut(s)	195, 384
PspGI	CCWGG	2 cut(s)	195, 384
PspN4I	GGNNCC	3 cut(s)	409, 519, 585
PspOMI	GGGCCC	2 cut(s)	517, 583
PspPI	GGNCC	6 cut(s)	199, 408, 517, 518, 583, 584
PstI	CTGCAG	1 cut(s)	565
PstNI	CAGNNNCTG	1 cut(s)	74
PsuI	RGATCY	2 cut(s)	94, 442
PvuII	CAGCTG	2 cut(s)	71, 363
RsaI	GTAC	2 cut(s)	752, 932
RsaNI	GTAC	2 cut(s)	751, 931
SaqAI	TTAA	1 cut(s)	1104
SatI	GCNGC	8 cut(s)	7, 69, 72, 75, 163, 255, 466, 561
Sau3AI	GATC	3 cut(s)	94, 442, 592
Sau96I	GGNCC	6 cut(s)	199, 408, 517, 518, 583, 584
SchI	GAGTC	3 cut(s)	670, 949, 998
ScrFI	CCNGG	2 cut(s)	197, 386
SduI	GDGCHC	4 cut(s)	456, 521, 587, 941
SfaNI	GCATC	2 cut(s)	147, 469
SfcI	CTRYAG	2 cut(s)	420, 561
SfuI	TTCGAA	2 cut(s)	1001, 1022
SmlI	CTYRAG	3 cut(s)	209, 866, 1165
SmoI	CTYRAG	3 cut(s)	209, 866, 1165
SpeI	ACTAGT	1 cut(s)	1091
Sse9I	AATT	2 cut(s)	832, 975
SseBI	AGGCCT	1 cut(s)	195
SsiI	CCGC	3 cut(s)	246, 252, 357
SspMI	CTAG	4 cut(s)	311, 786, 819, 1092
StuI	AGGCCT	1 cut(s)	195
StyD4I	CCNGG	2 cut(s)	195, 384
StyI	CCWWGG	2 cut(s)	119, 910
TaaI	ACNGT	3 cut(s)	64, 382, 550
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	3 cut(s)	108, 1001, 1022
TasI	AATT	2 cut(s)	832, 975
TatI	WGTACW	2 cut(s)	750, 930
TfiI	GAWTC	4 cut(s)	372, 998, 1060, 1150
Tru1I	TTAA	1 cut(s)	1104
Tru9I	TTAA	1 cut(s)	1104
TscAI	CASTG	4 cut(s)	67, 164, 883, 972
TseFI	GTSAC	2 cut(s)	493, 1157
TseI	GCWGC	8 cut(s)	6, 68, 71, 74, 162, 254, 465, 560
Tsp45I	GTSAC	2 cut(s)	493, 1157
TspDTI	ATGAA	2 cut(s)	69, 1126
TspGWI	ACGGA	1 cut(s)	410
TspRI	CASTG	4 cut(s)	67, 164, 883, 972
Van91I	CCANNNNNTGG	1 cut(s)	602
XapI	RAATTY	1 cut(s)	975
XcmI	CCANNNNNNNNNTGG	1 cut(s)	917
XspI	CTAG	4 cut(s)	311, 786, 819, 1092

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.