Rmu_sc0042349.1_g000002

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0042349.1
OG0020757
Physical Location & Seq
Forward (+)
2051 .. 2395
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0042349.1_g000002.1.cds

Sequence Viewer

Length: 345 bp
atgttggatcttaatctcaacgtggtgggatcgtcgtcgaaacaaaacgacgtcttcgtcgtcggttcgattcacggtatgtttccggaaggctccggcagcgccacgcaaatggacgagttcgggacgtcaaacttgtccgtagtcaatgtcgacgcctccagcaccaacgacgactcgtgctctgcacgagcaacggtgacgacgttcaacttcgatattctcaaggtcggtggagcagaaggagaagaagaagaagaagacgacgacgacgtcgttgtgacgaaggagctgtttccggtgaacaattggtcggggaagggtgaaaaagagcaggagagggcc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

115

Amino Acids

12.28

Weight (kDa)

4.05

Isoelectric Point (pI)

34.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020757)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0042349.1_g000002
rosa_samantha Rh5BG348300 Rh5DG361200 Rh6BG129300 Rh6CG127400 Rh6DG114800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 56, 272
AatII GACGTC 3 cut(s) 54, 131, 276
AccI GTMKAC 1 cut(s) 153
AccIII TCCGGA 1 cut(s) 85
AclWI GGATC 2 cut(s) 15, 37
AcyI GRCGYC 4 cut(s) 51, 128, 156, 273
AgsI TTSAA 1 cut(s) 211
AluBI AGCT 1 cut(s) 292
AluI AGCT 1 cut(s) 292
Alw21I GWGCWC 1 cut(s) 185
AlwI GGATC 2 cut(s) 15, 37
Aor13HI TCCGGA 1 cut(s) 85
ApeKI GCWGC 1 cut(s) 99
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 1 cut(s) 342
AsuHPI GGTGA 3 cut(s) 211, 313, 335
BauI CACGAG 2 cut(s) 178, 189
BbsI GAAGAC 2 cut(s) 46, 267
Bbv12I GWGCWC 1 cut(s) 185
BbvI GCAGC 1 cut(s) 111
BfoI RGCGCY 1 cut(s) 105
BisI GCNGC 1 cut(s) 100
BlsI GCNGC 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 342
BmiI GGNNCC 1 cut(s) 94
BpiI GAAGAC 2 cut(s) 46, 267
BpmI CTGGAG 1 cut(s) 145
BpuEI CTTGAG 1 cut(s) 209
BsaBI GATNNNNATC 1 cut(s) 12
BsaHI GRCGYC 4 cut(s) 51, 128, 156, 273
BsaWI WCCGGW 2 cut(s) 85, 298
Bse8I GATNNNNATC 1 cut(s) 12
BseAI TCCGGA 1 cut(s) 85
BseJI GATNNNNATC 1 cut(s) 12
BseXI GCAGC 1 cut(s) 111
BsgI GTGCAG 1 cut(s) 171
BshFI GGCC 1 cut(s) 344
BsiHKAI GWGCWC 1 cut(s) 185
BsiSI CCGG 3 cut(s) 86, 96, 299
BslFI GGGAC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 1 cut(s) 344
Bsp1286I GDGCHC 1 cut(s) 185
Bsp13I TCCGGA 1 cut(s) 85
Bsp143I GATC 2 cut(s) 7, 29
BspANI GGCC 1 cut(s) 344
BspEI TCCGGA 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 94
BspPI GGATC 2 cut(s) 15, 37
BssMI GATC 2 cut(s) 7, 29
BssNI GRCGYC 4 cut(s) 51, 128, 156, 273
BssSI CACGAG 2 cut(s) 178, 189
Bst2BI CACGAG 2 cut(s) 178, 189
Bst4CI ACNGT 2 cut(s) 77, 199
BstACI GRCGYC 4 cut(s) 51, 128, 156, 273
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 2 cut(s) 10, 32
BstMBI GATC 2 cut(s) 7, 29
BstMWI GCNNNNNNNGC 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 111
BstV2I GAAGAC 2 cut(s) 46, 267
BstX2I RGATCY 1 cut(s) 7
BstXI CCANNNNNNTGG 1 cut(s) 112
BstYI RGATCY 1 cut(s) 7
BsuRI GGCC 1 cut(s) 344
CfoI GCGC 1 cut(s) 104
Cfr13I GGNCC 1 cut(s) 342
CseI GACGC 1 cut(s) 164
CspCI CAANNNNNGTGG 2 cut(s) 214, 249
CviJI RGCY 3 cut(s) 93, 292, 344
CviKI_1 RGCY 3 cut(s) 93, 292, 344
DpnI GATC 2 cut(s) 9, 31
DpnII GATC 2 cut(s) 7, 29
DrdI GACNNNNNNGTC 2 cut(s) 56, 272
DseDI GACNNNNNNGTC 2 cut(s) 56, 272
FaiI YATR 1 cut(s) 80
FaqI GGGAC 1 cut(s) 139
FblI GTMKAC 1 cut(s) 153
Fnu4HI GCNGC 1 cut(s) 100
Fsp4HI GCNGC 1 cut(s) 100
GlaI GCGC 1 cut(s) 103
GluI GCNGC 1 cut(s) 100
GsuI CTGGAG 1 cut(s) 145
HaeII RGCGCY 1 cut(s) 105
HaeIII GGCC 1 cut(s) 344
HapII CCGG 3 cut(s) 86, 96, 299
HgaI GACGC 1 cut(s) 164
HhaI GCGC 1 cut(s) 104
Hin1I GRCGYC 4 cut(s) 51, 128, 156, 273
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 2 cut(s) 70, 176
HpaII CCGG 3 cut(s) 86, 96, 299
HphI GGTGA 3 cut(s) 211, 313, 335
Hpy166II GTNNAC 2 cut(s) 154, 304
Hpy188III TCNNGA 2 cut(s) 86, 124
Hpy8I GTNNAC 2 cut(s) 154, 304
HpyAV CCTTC 4 cut(s) 83, 236, 280, 313
HpyCH4III ACNGT 2 cut(s) 77, 199
HpyCH4IV ACGT 5 cut(s) 21, 51, 128, 206, 273
HpyCH4V TGCA 1 cut(s) 188
HpyF10VI GCNNNNNNNGC 1 cut(s) 99
HpySE526I ACGT 5 cut(s) 21, 51, 128, 206, 273
Hsp92I GRCGYC 4 cut(s) 51, 128, 156, 273
HspAI GCGC 1 cut(s) 102
Kpn2I TCCGGA 1 cut(s) 85
Kzo9I GATC 2 cut(s) 7, 29
LmnI GCTCC 3 cut(s) 98, 236, 289
LpnPI CCDG 5 cut(s) 99, 109, 175, 312, 320
Lsp1109I GCAGC 1 cut(s) 111
MaeII ACGT 5 cut(s) 21, 51, 128, 206, 273
MaeIII GTNAC 2 cut(s) 199, 280
MalI GATC 2 cut(s) 9, 31
MboI GATC 2 cut(s) 7, 29
MboII GAAGA 6 cut(s) 46, 260, 263, 266, 269, 272
MfeI CAATTG 1 cut(s) 307
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 185
MluCI AATT 1 cut(s) 307
MlyI GAGTC 1 cut(s) 170
MnlI CCTC 2 cut(s) 169, 333
MroI TCCGGA 1 cut(s) 85
MseI TTAA 1 cut(s) 12
MslI CAYNNNNRTG 1 cut(s) 110
MspI CCGG 3 cut(s) 86, 96, 299
MunI CAATTG 1 cut(s) 307
MwoI GCNNNNNNNGC 1 cut(s) 99
NdeII GATC 2 cut(s) 7, 29
NlaIV GGNNCC 1 cut(s) 94
NmuCI GTSAC 2 cut(s) 199, 280
PcsI WCGNNNNNNNCGW 5 cut(s) 54, 57, 203, 270, 273
PfeI GAWTC 1 cut(s) 70
PflFI GACNNNGTC 1 cut(s) 272
PkrI GCNGC 1 cut(s) 101
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
PspN4I GGNNCC 1 cut(s) 94
PspPI GGNCC 1 cut(s) 342
PsuI RGATCY 1 cut(s) 7
PsyI GACNNNGTC 1 cut(s) 272
RseI CAYNNNNRTG 1 cut(s) 110
SalI GTCGAC 1 cut(s) 152
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 1 cut(s) 100
Sau3AI GATC 2 cut(s) 7, 29
Sau96I GGNCC 1 cut(s) 342
SchI GAGTC 1 cut(s) 170
SduI GDGCHC 1 cut(s) 185
SetI ASST 7 cut(s) 24, 54, 131, 209, 231, 276, 294
SmiMI CAYNNNNRTG 1 cut(s) 110
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 1 cut(s) 307
TaaI ACNGT 2 cut(s) 77, 199
TaiI ACGT 5 cut(s) 24, 54, 131, 209, 276
TaqI TCGA 4 cut(s) 38, 68, 153, 216
TasI AATT 1 cut(s) 307
TfiI GAWTC 1 cut(s) 70
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TseFI GTSAC 2 cut(s) 199, 280
TseI GCWGC 1 cut(s) 99
Tsp45I GTSAC 2 cut(s) 199, 280
TspGWI ACGGA 1 cut(s) 130
Tth111I GACNNNGTC 1 cut(s) 272
XmiI GTMKAC 1 cut(s) 153
ZraI GACGTC 3 cut(s) 52, 129, 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.