Rh5BG348300

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0020757
Physical Location & Seq
Reverse (-)
53292512 .. 53292754
243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG348300.1

Sequence Viewer

Length: 243 bp
ATGTTGGATCTTAATCTCAACGTAGTGGGATCGTCATCGAAACAAAACGATGTCTTTGTCGTCGGTTCGGTTCATCGTATGTTTCAGGAAGGCTTCGGCAGCGCGACGCAAATGGACGAGTCCGGGACGTCGAACTTGTCCGTAGTCAATGCCGACGCCTCCAGCACCAACTACGACTCATGCTCCGCACGAGCCACGGTGACGACGTTCAACTTCGATATTTTCAAGGTCAGTGGAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

80

Amino Acids

8.46

Weight (kDa)

4.4

Isoelectric Point (pI)

23.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020757)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0042349.1_g000002
rosa_samantha Rh5BG348300 Rh5DG361200 Rh6BG129300 Rh6CG127400 Rh6DG114800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 131
AccII CGCG 1 cut(s) 104
AciI CCGC 1 cut(s) 186
AclWI GGATC 2 cut(s) 15, 37
AcyI GRCGYC 2 cut(s) 128, 156
AgsI TTSAA 2 cut(s) 211, 226
AlwI GGATC 2 cut(s) 15, 37
ApeKI GCWGC 1 cut(s) 99
AspLEI GCGC 1 cut(s) 104
AsuC2I CCSGG 1 cut(s) 124
AsuHPI GGTGA 1 cut(s) 211
BauI CACGAG 1 cut(s) 189
BbvI GCAGC 1 cut(s) 111
BcnI CCSGG 1 cut(s) 124
BisI GCNGC 1 cut(s) 100
BlsI GCNGC 1 cut(s) 101
Bme1390I CCNGG 1 cut(s) 124
BmrFI CCNGG 1 cut(s) 124
BpmI CTGGAG 1 cut(s) 145
BpuMI CCSGG 1 cut(s) 124
BsaBI GATNNNNATC 2 cut(s) 12, 34
BsaHI GRCGYC 2 cut(s) 128, 156
BsaJI CCNNGG 1 cut(s) 195
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bse8I GATNNNNATC 2 cut(s) 12, 34
BseDI CCNNGG 1 cut(s) 195
BseJI GATNNNNATC 2 cut(s) 12, 34
BseXI GCAGC 1 cut(s) 111
Bsh1236I CGCG 1 cut(s) 104
BsiSI CCGG 1 cut(s) 123
BslFI GGGAC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 139
Bsp143I GATC 2 cut(s) 7, 29
BspACI CCGC 1 cut(s) 186
BspFNI CGCG 1 cut(s) 104
BspPI GGATC 2 cut(s) 15, 37
BssECI CCNNGG 1 cut(s) 195
BssMI GATC 2 cut(s) 7, 29
BssNI GRCGYC 2 cut(s) 128, 156
BssSI CACGAG 1 cut(s) 189
Bst2BI CACGAG 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 199
BstACI GRCGYC 2 cut(s) 128, 156
BstDSI CCRYGG 1 cut(s) 195
BstFNI CGCG 1 cut(s) 104
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 2 cut(s) 10, 32
BstMBI GATC 2 cut(s) 7, 29
BstMWI GCNNNNNNNGC 1 cut(s) 99
BstSCI CCNGG 1 cut(s) 122
BstUI CGCG 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 111
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BtgI CCRYGG 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 238
CfoI GCGC 1 cut(s) 104
CseI GACGC 2 cut(s) 115, 164
CspCI CAANNNNNGTGG 1 cut(s) 214
CviAII CATG 1 cut(s) 180
CviJI RGCY 2 cut(s) 93, 194
CviKI_1 RGCY 2 cut(s) 93, 194
DpnI GATC 2 cut(s) 9, 31
DpnII GATC 2 cut(s) 7, 29
FaeI CATG 1 cut(s) 183
FaiI YATR 3 cut(s) 80, 181, 241
FaqI GGGAC 1 cut(s) 139
FatI CATG 1 cut(s) 179
Fnu4HI GCNGC 1 cut(s) 100
Fsp4HI GCNGC 1 cut(s) 100
GlaI GCGC 1 cut(s) 103
GluI GCNGC 1 cut(s) 100
GsuI CTGGAG 1 cut(s) 145
HapII CCGG 1 cut(s) 123
HgaI GACGC 2 cut(s) 115, 164
HhaI GCGC 1 cut(s) 104
Hin1I GRCGYC 2 cut(s) 128, 156
Hin1II CATG 1 cut(s) 183
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HinfI GANTC 2 cut(s) 119, 176
HpaII CCGG 1 cut(s) 123
HphI GGTGA 1 cut(s) 211
Hpy188III TCNNGA 1 cut(s) 86
Hpy99I CGWCG 5 cut(s) 65, 109, 133, 158, 208
HpyAV CCTTC 1 cut(s) 83
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 3 cut(s) 21, 128, 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 99
HpySE526I ACGT 3 cut(s) 21, 128, 206
Hsp92I GRCGYC 2 cut(s) 128, 156
Hsp92II CATG 1 cut(s) 183
HspAI GCGC 1 cut(s) 102
Kzo9I GATC 2 cut(s) 7, 29
LmnI GCTCC 2 cut(s) 188, 236
LpnPI CCDG 3 cut(s) 71, 136, 175
Lsp1109I GCAGC 1 cut(s) 111
MaeII ACGT 3 cut(s) 21, 128, 206
MaeIII GTNAC 1 cut(s) 199
MalI GATC 2 cut(s) 9, 31
MboI GATC 2 cut(s) 7, 29
MflI RGATCY 1 cut(s) 7
MlyI GAGTC 2 cut(s) 128, 170
MnlI CCTC 1 cut(s) 169
MseI TTAA 1 cut(s) 12
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 1 cut(s) 124
MvnI CGCG 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 99
NciI CCSGG 1 cut(s) 124
NdeII GATC 2 cut(s) 7, 29
NlaIII CATG 1 cut(s) 183
NmuCI GTSAC 1 cut(s) 199
PcsI WCGNNNNNNNCGW 1 cut(s) 203
PfoI TCCNGGA 1 cut(s) 122
PkrI GCNGC 1 cut(s) 101
PleI GAGTC 2 cut(s) 127, 170
PpsI GAGTC 2 cut(s) 127, 170
PsuI RGATCY 1 cut(s) 7
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 1 cut(s) 100
Sau3AI GATC 2 cut(s) 7, 29
SchI GAGTC 2 cut(s) 128, 170
ScrFI CCNGG 1 cut(s) 124
SetI ASST 4 cut(s) 24, 131, 209, 231
SsiI CCGC 1 cut(s) 186
StyD4I CCNGG 1 cut(s) 122
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 3 cut(s) 24, 131, 209
TaqI TCGA 3 cut(s) 38, 131, 216
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 1 cut(s) 238
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 1 cut(s) 99
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 1 cut(s) 62
TspGWI ACGGA 1 cut(s) 130
TspRI CASTG 1 cut(s) 238
ZraI GACGTC 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.