Rh6BG129300

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0020757
Physical Location & Seq
Reverse (-)
20085739 .. 20090177
4439 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG129300.1

Sequence Viewer

Length: 621 bp
ATGGACGAGTCCAGGACGTCGAACTCGTCCGTGGTCAATGCCGACACCTCCAGCACCAACGATTACCCGTGCTCCACACGAGCCGCGGTGACGACGTTCAACTTCGATATTCTCAAGGTCGGTGGAGCAGAAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGATGATGACGTCGTTGTGACGAAGGAGCTGTTTCCGGTGAACAGTTGGCCGGGGAAGGGTGAAGAAGAGCAGGAGAGGGCCCAAGTCTCGGAGTTCTCAGTTAGTGAAGAATTGCTGTGGGAGCTGTTTGTTCAAGCTGGTCCTATTGTTAATGTCTCCCCGATTCCTGTTAAAGATGTTATTTCTGACTATAAATTTGTTGTTTTGACTGCTATGGAGGTAGTCAAGGTGCTTAATATGATCAAGCTTTACGGAAAGATAATTCGTGTAAACAAGAAGGAGCATAGGTCGGCTCTGTTCAAAATTCAAGCAGGTGAAAATCTTTTTCTCGATAGGCTTTTAACATCAATTGGAAACTTCTGCATCTATTCAATTGTTGTTGGAATGGTTATTGGGATATCAGTTGGAACTCAGAGAAGGGCTGCCCATTCTTACTGGTGCCAACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

206

Amino Acids

23.07

Weight (kDa)

4.53

Isoelectric Point (pI)

36.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020757)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0042349.1_g000002
rosa_samantha Rh5BG348300 Rh5DG361200 Rh6BG129300 Rh6CG127400 Rh6DG114800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 473
AatII GACGTC 2 cut(s) 20, 183
Acc36I ACCTGC 1 cut(s) 473
AccB1I GGYRCC 1 cut(s) 609
AccII CGCG 1 cut(s) 86
AciI CCGC 2 cut(s) 84, 86
AcoI YGGCCR 1 cut(s) 218
AcsI RAATTY 2 cut(s) 365, 474
AcyI GRCGYC 2 cut(s) 17, 180
AfiI CCNNNNNNNGG 2 cut(s) 227, 259
AgsI TTSAA 5 cut(s) 100, 305, 472, 479, 543
AjnI CCWGG 1 cut(s) 11
AluBI AGCT 4 cut(s) 199, 295, 308, 418
AluI AGCT 4 cut(s) 199, 295, 308, 418
Alw21I GWGCWC 1 cut(s) 74
Alw26I GTCTC 2 cut(s) 262, 331
AoxI GGCC 2 cut(s) 218, 249
ApaI GGGCCC 1 cut(s) 253
ApeKI GCWGC 1 cut(s) 593
ApoI RAATTY 2 cut(s) 365, 474
ArsI GACNNNNNNTTYG 2 cut(s) 350, 382
AspS9I GGNCC 3 cut(s) 249, 250, 311
AsuC2I CCSGG 1 cut(s) 222
AsuHPI GGTGA 4 cut(s) 100, 220, 242, 497
AvaII GGWCC 1 cut(s) 311
BaeGI GKGCMC 1 cut(s) 253
BanI GGYRCC 1 cut(s) 609
BanII GRGCYC 1 cut(s) 253
BauI CACGAG 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 74
BbvI GCAGC 1 cut(s) 580
BciT130I CCWGG 1 cut(s) 13
BclI TGATCA 1 cut(s) 411
BcnI CCSGG 1 cut(s) 222
BcoDI GTCTC 2 cut(s) 262, 331
BfaI CTAG 1 cut(s) 619
BfuAI ACCTGC 1 cut(s) 473
BisI GCNGC 2 cut(s) 84, 594
BlsI GCNGC 2 cut(s) 85, 595
Bme1390I CCNGG 2 cut(s) 13, 222
Bme18I GGWCC 1 cut(s) 311
BmgT120I GGNCC 3 cut(s) 249, 250, 311
BmiI GGNNCC 2 cut(s) 251, 611
BmrFI CCNGG 2 cut(s) 13, 222
BmsI GCATC 1 cut(s) 543
BpmI CTGGAG 1 cut(s) 34
BpuEI CTTGAG 1 cut(s) 98
BpuMI CCSGG 1 cut(s) 222
BsaHI GRCGYC 2 cut(s) 17, 180
BsaJI CCNNGG 3 cut(s) 30, 84, 221
BsaWI WCCGGW 1 cut(s) 205
BsaXI ACNNNNNCTCC 4 cut(s) 56, 86, 443, 473
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 259
Bse1I ACTGG 1 cut(s) 611
BseBI CCWGG 1 cut(s) 13
BseDI CCNNGG 3 cut(s) 30, 84, 221
BseLI CCNNNNNNNGG 2 cut(s) 227, 259
BseMII CTCAG 2 cut(s) 282, 596
BseNI ACTGG 1 cut(s) 611
BseSI GKGCMC 1 cut(s) 253
BseXI GCAGC 1 cut(s) 580
Bsh1236I CGCG 1 cut(s) 86
BshFI GGCC 2 cut(s) 220, 251
BshNI GGYRCC 1 cut(s) 609
BsiHKAI GWGCWC 1 cut(s) 74
BsiSI CCGG 2 cut(s) 206, 221
BslI CCNNNNNNNGG 2 cut(s) 227, 259
BsmAI GTCTC 2 cut(s) 262, 331
BsnI GGCC 2 cut(s) 220, 251
Bsp120I GGGCCC 1 cut(s) 249
Bsp1286I GDGCHC 2 cut(s) 74, 253
Bsp143I GATC 1 cut(s) 411
BspACI CCGC 2 cut(s) 84, 86
BspANI GGCC 2 cut(s) 220, 251
BspCNI CTCAG 2 cut(s) 281, 595
BspFNI CGCG 1 cut(s) 86
BspLI GGNNCC 2 cut(s) 251, 611
BspMI ACCTGC 1 cut(s) 473
BspQI GCTCTTC 1 cut(s) 231
BspT107I GGYRCC 1 cut(s) 609
BsrI ACTGG 1 cut(s) 611
BssECI CCNNGG 3 cut(s) 30, 84, 221
BssMI GATC 1 cut(s) 411
BssNI GRCGYC 2 cut(s) 17, 180
BssSI CACGAG 1 cut(s) 78
Bst2BI CACGAG 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 13
Bst4CI ACNGT 1 cut(s) 215
Bst6I CTCTTC 1 cut(s) 231
BstACI GRCGYC 2 cut(s) 17, 180
BstDEI CTNAG 2 cut(s) 268, 582
BstDSI CCRYGG 2 cut(s) 30, 84
BstFNI CGCG 1 cut(s) 86
BstKTI GATC 1 cut(s) 414
BstMAI GTCTC 2 cut(s) 262, 331
BstMBI GATC 1 cut(s) 411
BstMWI GCNNNNNNNGC 1 cut(s) 292
BstNI CCWGG 1 cut(s) 13
BstSCI CCNGG 2 cut(s) 11, 220
BstSLI GKGCMC 1 cut(s) 253
BstUI CGCG 1 cut(s) 86
BstV1I GCAGC 1 cut(s) 580
BsuRI GGCC 2 cut(s) 220, 251
BtgI CCRYGG 2 cut(s) 30, 84
BveI ACCTGC 1 cut(s) 473
Cfr13I GGNCC 3 cut(s) 249, 250, 311
Cfr42I CCGCGG 1 cut(s) 87
CspCI CAANNNNNGTGG 2 cut(s) 103, 138
DdeI CTNAG 2 cut(s) 268, 582
DpnI GATC 1 cut(s) 413
DpnII GATC 1 cut(s) 411
EaeI YGGCCR 1 cut(s) 218
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
Eco24I GRGCYC 1 cut(s) 253
Eco32I GATATC 1 cut(s) 570
Eco47I GGWCC 1 cut(s) 311
EcoO109I RGGNCCY 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 11
EcoRV GATATC 1 cut(s) 570
EcoT38I GRGCYC 1 cut(s) 253
FaiI YATR 4 cut(s) 363, 386, 410, 456
FbaI TGATCA 1 cut(s) 411
Fnu4HI GCNGC 2 cut(s) 84, 594
FriOI GRGCYC 1 cut(s) 253
Fsp4HI GCNGC 2 cut(s) 84, 594
FspBI CTAG 1 cut(s) 619
GluI GCNGC 2 cut(s) 84, 594
GsuI CTGGAG 1 cut(s) 34
HaeIII GGCC 2 cut(s) 220, 251
HapII CCGG 2 cut(s) 206, 221
Hin1I GRCGYC 2 cut(s) 17, 180
HindIII AAGCTT 1 cut(s) 416
HinfI GANTC 2 cut(s) 8, 334
HpaII CCGG 2 cut(s) 206, 221
HphI GGTGA 4 cut(s) 100, 220, 242, 497
Hpy166II GTNNAC 2 cut(s) 211, 442
Hpy188I TCNGA 3 cut(s) 262, 358, 585
Hpy188III TCNNGA 1 cut(s) 500
Hpy8I GTNNAC 2 cut(s) 211, 442
Hpy99I CGWCG 3 cut(s) 22, 97, 185
HpyAV CCTTC 5 cut(s) 125, 187, 220, 442, 582
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4IV ACGT 3 cut(s) 17, 95, 180
HpyCH4V TGCA 1 cut(s) 534
HpyF10VI GCNNNNNNNGC 1 cut(s) 292
HpyF3I CTNAG 2 cut(s) 268, 582
HpySE526I ACGT 3 cut(s) 17, 95, 180
Hsp92I GRCGYC 2 cut(s) 17, 180
Ksp22I TGATCA 1 cut(s) 411
KspI CCGCGG 1 cut(s) 87
Kzo9I GATC 1 cut(s) 411
LguI GCTCTTC 1 cut(s) 231
LmnI GCTCC 5 cut(s) 77, 125, 196, 292, 451
LpnPI CCDG 9 cut(s) 25, 64, 219, 227, 234, 294, 351, 468, 592
Lsp1109I GCAGC 1 cut(s) 580
LweI GCATC 1 cut(s) 543
MaeI CTAG 1 cut(s) 619
MaeII ACGT 3 cut(s) 17, 95, 180
MaeIII GTNAC 2 cut(s) 88, 187
MalI GATC 1 cut(s) 413
MboI GATC 1 cut(s) 411
MfeI CAATTG 2 cut(s) 519, 543
MhlI GDGCHC 2 cut(s) 74, 253
MluCI AATT 6 cut(s) 281, 365, 432, 474, 519, 543
MlyI GAGTC 1 cut(s) 17
MmeI TCCRAC 2 cut(s) 532, 556
MnlI CCTC 3 cut(s) 58, 240, 382
MseI TTAA 4 cut(s) 321, 342, 405, 512
MspA1I CMGCKG 1 cut(s) 86
MspI CCGG 2 cut(s) 206, 221
MspR9I CCNGG 2 cut(s) 13, 222
MunI CAATTG 2 cut(s) 519, 543
MvaI CCWGG 1 cut(s) 13
MvnI CGCG 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 292
NciI CCSGG 1 cut(s) 222
NdeII GATC 1 cut(s) 411
NlaIV GGNNCC 2 cut(s) 251, 611
NmuCI GTSAC 2 cut(s) 88, 187
PaqCI CACCTGC 1 cut(s) 473
PciSI GCTCTTC 1 cut(s) 231
PcsI WCGNNNNNNNCGW 1 cut(s) 23
PfeI GAWTC 1 cut(s) 334
PfoI TCCNGGA 1 cut(s) 11
PkrI GCNGC 2 cut(s) 85, 595
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
Psp6I CCWGG 1 cut(s) 11
PspGI CCWGG 1 cut(s) 11
PspN4I GGNNCC 2 cut(s) 251, 611
PspOMI GGGCCC 1 cut(s) 249
PspPI GGNCC 3 cut(s) 249, 250, 311
SacII CCGCGG 1 cut(s) 87
SapI GCTCTTC 1 cut(s) 231
SaqAI TTAA 4 cut(s) 321, 342, 405, 512
SatI GCNGC 2 cut(s) 84, 594
Sau3AI GATC 1 cut(s) 411
Sau96I GGNCC 3 cut(s) 249, 250, 311
SchI GAGTC 1 cut(s) 17
ScrFI CCNGG 2 cut(s) 13, 222
SduI GDGCHC 2 cut(s) 74, 253
SfaNI GCATC 1 cut(s) 543
Sfr303I CCGCGG 1 cut(s) 87
SgrBI CCGCGG 1 cut(s) 87
SinI GGWCC 1 cut(s) 311
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 6 cut(s) 281, 365, 432, 474, 519, 543
SsiI CCGC 2 cut(s) 84, 86
SspMI CTAG 1 cut(s) 619
StyD4I CCNGG 2 cut(s) 11, 220
TaaI ACNGT 1 cut(s) 215
TaiI ACGT 3 cut(s) 20, 98, 183
TaqI TCGA 3 cut(s) 20, 105, 501
TasI AATT 6 cut(s) 281, 365, 432, 474, 519, 543
TauI GCSGC 1 cut(s) 86
TfiI GAWTC 1 cut(s) 334
Tru1I TTAA 4 cut(s) 321, 342, 405, 512
Tru9I TTAA 4 cut(s) 321, 342, 405, 512
TseFI GTSAC 2 cut(s) 88, 187
TseI GCWGC 1 cut(s) 593
Tsp45I GTSAC 2 cut(s) 88, 187
TspGWI ACGGA 2 cut(s) 19, 438
VpaK11BI GGWCC 1 cut(s) 311
XapI RAATTY 2 cut(s) 365, 474
XspI CTAG 1 cut(s) 619
ZraI GACGTC 2 cut(s) 18, 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.