Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042714.1

Orthogroup ID

OG0025677

Physical Location & Seq

Genomic Coordinates Forward (+)

293 .. 813

Gene Structure 521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042714.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 521 bp

atgtcggattccggcgatgagattccatctccgaacacctccctctcccacaagctcacctccaaaaccgagctcctcaacctcaagctctacgtcgtgatcgcaatcctcctcgccggcgtctttgccgtgtccctcctcgtcttcctctgcgtccgcgcccttcgggtttcgcgtcgccggaagagccgcatccgcgtgaagcacagctccggctcaatcccgctcgtctccaaagagatcgccgagatcaaggagcctcgtctggatccgtctcctcctcctgccgccgccgccgccgagggcaaaatcggaaaccaaaagttgaaggaagcgcgaccgactgaaccgaccgttgatgtggaaaatgggaaaaggaggagcggggagagtgacgtgttcgggtggggccggtggtatagcctcagggagctggagaccgcgacacgtggattctcgccagagaatgtgattggagaaggagggtacggcgtcgtttaccggggatctttgcaagacgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

174

Amino Acids

18.96

Weight (kDa)

9.58

Isoelectric Point (pI)

53.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025677)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0042714.1_g000001
rosa_samantha	Rh6BG127400 Rh6CG125900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	226, 384
AccII	CGCG	5 cut(s)	159, 175, 198, 337, 443
AclWI	GGATC	3 cut(s)	263, 276, 514
AcvI	CACGTG	1 cut(s)	449
AcyI	GRCGYC	2 cut(s)	120, 492
AfaI	GTAC	1 cut(s)	488
AflIII	ACRYGT	2 cut(s)	396, 446
AgsI	TTSAA	1 cut(s)	328
AjiI	CACGTC	1 cut(s)	397
AluBI	AGCT	5 cut(s)	55, 73, 88, 210, 433
AluI	AGCT	5 cut(s)	55, 73, 88, 210, 433
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	3 cut(s)	235, 279, 431
AlwI	GGATC	3 cut(s)	263, 276, 514
AoxI	GGCC	1 cut(s)	409
AspLEI	GCGC	2 cut(s)	161, 337
AspS9I	GGNCC	1 cut(s)	409
AsuC2I	CCSGG	1 cut(s)	503
AsuHPI	GGTGA	1 cut(s)	49
AxyI	CCTNAGG	1 cut(s)	425
BamHI	GGATCC	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	75
BbrPI	CACGTG	1 cut(s)	449
BbsI	GAAGAC	1 cut(s)	136
Bbv12I	GWGCWC	1 cut(s)	75
BccI	CCATC	1 cut(s)	34
BceAI	ACGGC	2 cut(s)	113, 505
BcnI	CCSGG	1 cut(s)	503
BcoDI	GTCTC	3 cut(s)	235, 279, 431
BisI	GCNGC	5 cut(s)	190, 288, 291, 294, 297
BlsI	GCNGC	5 cut(s)	191, 289, 292, 295, 298
Bme1390I	CCNGG	1 cut(s)	503
BmgBI	CACGTC	1 cut(s)	397
BmgT120I	GGNCC	1 cut(s)	409
BmiI	GGNNCC	3 cut(s)	258, 270, 410
BmrFI	CCNGG	1 cut(s)	503
BmsI	GCATC	1 cut(s)	201
BpiI	GAAGAC	1 cut(s)	136
BpmI	CTGGAG	1 cut(s)	455
BpuEI	CTTGAG	1 cut(s)	68
BpuMI	CCSGG	1 cut(s)	503
BsaAI	YACGTR	1 cut(s)	449
BsaBI	GATNNNNATC	1 cut(s)	104
BsaHI	GRCGYC	2 cut(s)	120, 492
BsaI	GGTCTC	1 cut(s)	431
BsaJI	CCNNGG	2 cut(s)	300, 502
Bse118I	RCCGGY	2 cut(s)	116, 411
Bse21I	CCTNAGG	1 cut(s)	425
Bse8I	GATNNNNATC	1 cut(s)	104
BseDI	CCNNGG	2 cut(s)	300, 502
BseGI	GGATG	1 cut(s)	192
BseJI	GATNNNNATC	1 cut(s)	104
BseMII	CTCAG	1 cut(s)	439
BseRI	GAGGAG	6 cut(s)	65, 101, 128, 267, 270, 394
Bsh1236I	CGCG	5 cut(s)	159, 175, 198, 337, 443
Bsh1285I	CGRYCG	2 cut(s)	341, 354
BshFI	GGCC	1 cut(s)	411
BsiEI	CGRYCG	2 cut(s)	341, 354
BsiHKAI	GWGCWC	1 cut(s)	75
BsiSI	CCGG	6 cut(s)	12, 117, 181, 213, 412, 502
BslFI	GGGAC	1 cut(s)	118
BsmAI	GTCTC	3 cut(s)	235, 279, 431
BsmBI	CGTCTC	2 cut(s)	235, 279
BsmFI	GGGAC	1 cut(s)	118
BsnI	GGCC	1 cut(s)	411
Bso31I	GGTCTC	1 cut(s)	431
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	5 cut(s)	99, 240, 249, 268, 506
BspANI	GGCC	1 cut(s)	411
BspCNI	CTCAG	1 cut(s)	438
BspFNI	CGCG	5 cut(s)	159, 175, 198, 337, 443
BspLI	GGNNCC	3 cut(s)	258, 270, 410
BspPI	GGATC	3 cut(s)	263, 276, 514
BspQI	GCTCTTC	1 cut(s)	179
BspTNI	GGTCTC	1 cut(s)	431
BsrBI	CCGCTC	2 cut(s)	226, 384
BsrFI	RCCGGY	2 cut(s)	116, 411
BssAI	RCCGGY	2 cut(s)	116, 411
BssECI	CCNNGG	2 cut(s)	300, 502
BssMI	GATC	5 cut(s)	99, 240, 249, 268, 506
BssNI	GRCGYC	2 cut(s)	120, 492
Bst4CI	ACNGT	1 cut(s)	355
Bst6I	CTCTTC	1 cut(s)	179
BstACI	GRCGYC	2 cut(s)	120, 492
BstBAI	YACGTR	1 cut(s)	449
BstC8I	GCNNGC	1 cut(s)	118
BstDEI	CTNAG	1 cut(s)	425
BstF5I	GGATG	1 cut(s)	192
BstFNI	CGCG	5 cut(s)	159, 175, 198, 337, 443
BstHHI	GCGC	2 cut(s)	161, 337
BstKTI	GATC	5 cut(s)	102, 243, 252, 271, 509
BstMAI	GTCTC	3 cut(s)	235, 279, 431
BstMBI	GATC	5 cut(s)	99, 240, 249, 268, 506
BstMCI	CGRYCG	2 cut(s)	341, 354
BstMWI	GCNNNNNNNGC	4 cut(s)	186, 195, 293, 296
BstSCI	CCNGG	1 cut(s)	501
BstUI	CGCG	5 cut(s)	159, 175, 198, 337, 443
BstV2I	GAAGAC	1 cut(s)	136
BstX2I	RGATCY	2 cut(s)	268, 506
BstYI	RGATCY	2 cut(s)	268, 506
Bsu36I	CCTNAGG	1 cut(s)	425
BsuRI	GGCC	1 cut(s)	411
BtgZI	GCGATG	1 cut(s)	30
BtrI	CACGTC	1 cut(s)	397
BtsCI	GGATG	1 cut(s)	192
Cac8I	GCNNGC	1 cut(s)	118
CfoI	GCGC	2 cut(s)	161, 337
Cfr10I	RCCGGY	2 cut(s)	116, 411
Cfr13I	GGNCC	1 cut(s)	409
CseI	GACGC	4 cut(s)	109, 142, 164, 481
Csp6I	GTAC	1 cut(s)	487
CviQI	GTAC	1 cut(s)	487
DdeI	CTNAG	1 cut(s)	425
DpnI	GATC	5 cut(s)	101, 242, 251, 270, 508
DpnII	GATC	5 cut(s)	99, 240, 249, 268, 506
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Ecl136II	GAGCTC	1 cut(s)	73
Eco24I	GRGCYC	1 cut(s)	75
Eco31I	GGTCTC	1 cut(s)	431
Eco53kI	GAGCTC	1 cut(s)	73
Eco72I	CACGTG	1 cut(s)	449
Eco81I	CCTNAGG	1 cut(s)	425
EcoICRI	GAGCTC	1 cut(s)	73
EcoT38I	GRGCYC	1 cut(s)	75
Esp3I	CGTCTC	2 cut(s)	235, 279
FaiI	YATR	1 cut(s)	420
FaqI	GGGAC	1 cut(s)	118
FauI	CCCGC	2 cut(s)	231, 377
Fnu4HI	GCNGC	5 cut(s)	190, 288, 291, 294, 297
FokI	GGATG	1 cut(s)	179
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	5 cut(s)	190, 288, 291, 294, 297
GlaI	GCGC	2 cut(s)	160, 336
GluI	GCNGC	5 cut(s)	190, 288, 291, 294, 297
GsuI	CTGGAG	1 cut(s)	455
HaeIII	GGCC	1 cut(s)	411
HapII	CCGG	6 cut(s)	12, 117, 181, 213, 412, 502
HgaI	GACGC	4 cut(s)	109, 142, 164, 481
HhaI	GCGC	2 cut(s)	161, 337
Hin1I	GRCGYC	2 cut(s)	120, 492
Hin6I	GCGC	2 cut(s)	159, 335
HinP1I	GCGC	2 cut(s)	159, 335
HinfI	GANTC	3 cut(s)	8, 22, 453
HpaII	CCGG	6 cut(s)	12, 117, 181, 213, 412, 502
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	499
Hpy188I	TCNGA	3 cut(s)	7, 33, 314
Hpy188III	TCNNGA	2 cut(s)	97, 266
Hpy8I	GTNNAC	1 cut(s)	499
Hpy99I	CGWCG	3 cut(s)	98, 180, 497
HpyAV	CCTTC	3 cut(s)	173, 322, 473
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4IV	ACGT	3 cut(s)	93, 396, 448
HpyCH4V	TGCA	1 cut(s)	514
HpyF10VI	GCNNNNNNNGC	4 cut(s)	186, 195, 293, 296
HpyF3I	CTNAG	1 cut(s)	425
HpySE526I	ACGT	3 cut(s)	93, 396, 448
Hsp92I	GRCGYC	2 cut(s)	120, 492
HspAI	GCGC	2 cut(s)	159, 335
KroI	GCCGGC	1 cut(s)	116
KroNI	GCCGGC	1 cut(s)	118
Kzo9I	GATC	5 cut(s)	99, 240, 249, 268, 506
LguI	GCTCTTC	1 cut(s)	179
LmnI	GCTCC	5 cut(s)	78, 215, 256, 381, 430
LweI	GCATC	1 cut(s)	201
MaeII	ACGT	3 cut(s)	93, 396, 448
MaeIII	GTNAC	1 cut(s)	392
MalI	GATC	5 cut(s)	101, 242, 251, 270, 508
MbiI	CCGCTC	2 cut(s)	226, 384
MboI	GATC	5 cut(s)	99, 240, 249, 268, 506
MboII	GAAGA	2 cut(s)	136, 196
MflI	RGATCY	2 cut(s)	268, 506
MhlI	GDGCHC	1 cut(s)	75
MreI	CGCCGGCG	1 cut(s)	116
MroNI	GCCGGC	1 cut(s)	116
MslI	CAYNNNNRTG	1 cut(s)	197
MspI	CCGG	6 cut(s)	12, 117, 181, 213, 412, 502
MspR9I	CCNGG	1 cut(s)	503
MvnI	CGCG	5 cut(s)	159, 175, 198, 337, 443
MwoI	GCNNNNNNNGC	4 cut(s)	186, 195, 293, 296
NaeI	GCCGGC	1 cut(s)	118
NciI	CCSGG	1 cut(s)	503
NdeII	GATC	5 cut(s)	99, 240, 249, 268, 506
NgoMIV	GCCGGC	1 cut(s)	116
NlaIV	GGNNCC	3 cut(s)	258, 270, 410
NmeAIII	GCCGAG	2 cut(s)	271, 325
NmuCI	GTSAC	1 cut(s)	392
PciSI	GCTCTTC	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	1 cut(s)	172
PdiI	GCCGGC	1 cut(s)	118
PfeI	GAWTC	3 cut(s)	8, 22, 453
PkrI	GCNGC	5 cut(s)	191, 289, 292, 295, 298
PmaCI	CACGTG	1 cut(s)	449
PmlI	CACGTG	1 cut(s)	449
Ppu21I	YACGTR	1 cut(s)	449
Psp124BI	GAGCTC	1 cut(s)	75
PspCI	CACGTG	1 cut(s)	449
PspN4I	GGNNCC	3 cut(s)	258, 270, 410
PspPI	GGNCC	1 cut(s)	409
PsuI	RGATCY	2 cut(s)	268, 506
RsaI	GTAC	1 cut(s)	488
RsaNI	GTAC	1 cut(s)	487
RseI	CAYNNNNRTG	1 cut(s)	197
SacI	GAGCTC	1 cut(s)	75
SapI	GCTCTTC	1 cut(s)	179
SatI	GCNGC	5 cut(s)	190, 288, 291, 294, 297
Sau3AI	GATC	5 cut(s)	99, 240, 249, 268, 506
Sau96I	GGNCC	1 cut(s)	409
ScrFI	CCNGG	1 cut(s)	503
SduI	GDGCHC	1 cut(s)	75
SfaNI	GCATC	1 cut(s)	201
SgrAI	CRCCGGYG	1 cut(s)	116
SmiMI	CAYNNNNRTG	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
SstI	GAGCTC	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	501
TaaI	ACNGT	1 cut(s)	355
TaiI	ACGT	3 cut(s)	96, 399, 451
TaqII	GACCGA	1 cut(s)	355
TauI	GCSGC	5 cut(s)	192, 290, 293, 296, 299
TfiI	GAWTC	3 cut(s)	8, 22, 453
TseFI	GTSAC	1 cut(s)	392
Tsp45I	GTSAC	1 cut(s)	392
TspGWI	ACGGA	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.