Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0025677

Physical Location & Seq

Genomic Coordinates Reverse (-)

19874601 .. 19876976

Gene Structure 2376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG127400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGTCCGTTGAAACCGCACTCTCTCTCTCTCTCTCTCTGTCACCAAAATCCTGTAATGGCCTAACTCGATTACTCGACTTTAACTTCAAGCCATTTCATCCCCCTTTTAACAAACACTCCTCTCTTCCTTCTCACATTTTCACTCAAGCCTCCAACTCCTCCACCTCGCCGGAAACAATGTCGGATTCCGGCGACGAGATTCCATCTCCGAACACCTCCCTCTCCCACAAGCTCACCTCCAAAACCGAGCTCCTCAACCTCAAGCTCTACGTCGTGATCGCAATCCTCCTCGCCGGCGTCTTTGCCGTGTCCCTCCTCGTCTTCCTCTGCGTCCGCGCCCATCGGGTTTCGCGTCGCCGGAAGAGCCGCATCCGCGTGAAGCACAGCTCCGGCTCAATCCCGCTCGTCTCCAAAGAGATCGCCGAGATCAAGGAGCCTCGTCTGGATCCGTCTCCTCCTCCTGCCGCCGCAGCCGCCGAGGGCAAAATCGGAAACCAAAAGTTGAAGGAAGCACGACCGACTGAACCGACGGTTGATGTGGAAAATGGGAAAAGGAGGTGCGGGGAGAGTGACGTGTTCGGGTGGGGCCGGTGGTATAGCCTCAGGGAGCTGGAGACCGCGACACGTGGATTCTCGCCAGAGAATGTGATTGGAGAAGGAGGATACGGCGTCGTTTACCGGGGATCTTTGCAAGACGGCTCTGTTGTCGCCGTCAAGAACCTTCTTAATAACAATAGCTTGTTACTACTTTGGATTGACCAAAATGTATGTGAGACACTGCGACTTCATCATCAAAAGATTCCAATTCTGAAATTAAACAAGAAGGGTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

277

Amino Acids

30.48

Weight (kDa)

9.69

Isoelectric Point (pI)

47.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025677)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0042714.1_g000001
rosa_samantha	Rh6BG127400 Rh6CG125900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	403
AccII	CGCG	4 cut(s)	336, 352, 375, 620
AclWI	GGATC	3 cut(s)	440, 453, 691
AcvI	CACGTG	1 cut(s)	626
AcyI	GRCGYC	2 cut(s)	297, 669
AflIII	ACRYGT	2 cut(s)	573, 623
AgsI	TTSAA	3 cut(s)	11, 88, 505
AjiI	CACGTC	1 cut(s)	574
AluBI	AGCT	6 cut(s)	232, 250, 265, 387, 610, 738
AluI	AGCT	6 cut(s)	232, 250, 265, 387, 610, 738
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	4 cut(s)	412, 456, 608, 767
AlwI	GGATC	3 cut(s)	440, 453, 691
AoxI	GGCC	2 cut(s)	58, 586
ApeKI	GCWGC	1 cut(s)	470
AspLEI	GCGC	1 cut(s)	338
AspS9I	GGNCC	1 cut(s)	586
AsuC2I	CCSGG	1 cut(s)	680
AsuHPI	GGTGA	2 cut(s)	33, 226
AxyI	CCTNAGG	1 cut(s)	602
BamHI	GGATCC	1 cut(s)	445
BanII	GRGCYC	1 cut(s)	252
BbrPI	CACGTG	1 cut(s)	626
BbsI	GAAGAC	1 cut(s)	313
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	1 cut(s)	482
BccI	CCATC	2 cut(s)	211, 348
BceAI	ACGGC	4 cut(s)	290, 682, 695, 712
BciVI	GTATCC	1 cut(s)	656
BcnI	CCSGG	1 cut(s)	680
BcoDI	GTCTC	4 cut(s)	412, 456, 608, 767
BfuI	GTATCC	1 cut(s)	656
BisI	GCNGC	5 cut(s)	367, 465, 468, 471, 474
BlsI	GCNGC	5 cut(s)	368, 466, 469, 472, 475
Bme1390I	CCNGG	1 cut(s)	680
BmgBI	CACGTC	1 cut(s)	574
BmgT120I	GGNCC	1 cut(s)	586
BmiI	GGNNCC	3 cut(s)	435, 447, 587
BmrFI	CCNGG	1 cut(s)	680
BmsI	GCATC	1 cut(s)	378
BpiI	GAAGAC	1 cut(s)	313
BpmI	CTGGAG	1 cut(s)	632
BpuEI	CTTGAG	2 cut(s)	129, 245
BpuMI	CCSGG	1 cut(s)	680
BsaAI	YACGTR	1 cut(s)	626
BsaBI	GATNNNNATC	1 cut(s)	281
BsaHI	GRCGYC	2 cut(s)	297, 669
BsaI	GGTCTC	1 cut(s)	608
BsaJI	CCNNGG	2 cut(s)	477, 679
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bse118I	RCCGGY	2 cut(s)	293, 588
Bse21I	CCTNAGG	1 cut(s)	602
Bse8I	GATNNNNATC	1 cut(s)	281
BseDI	CCNNGG	2 cut(s)	477, 679
BseGI	GGATG	2 cut(s)	97, 369
BseJI	GATNNNNATC	1 cut(s)	281
BseMII	CTCAG	1 cut(s)	616
BseRI	GAGGAG	7 cut(s)	109, 148, 242, 278, 305, 444, 447
BseXI	GCAGC	1 cut(s)	482
Bsh1236I	CGCG	4 cut(s)	336, 352, 375, 620
Bsh1285I	CGRYCG	1 cut(s)	518
BshFI	GGCC	2 cut(s)	60, 588
BsiEI	CGRYCG	1 cut(s)	518
BsiHKAI	GWGCWC	1 cut(s)	252
BsiSI	CCGG	7 cut(s)	170, 189, 294, 358, 390, 589, 679
BslFI	GGGAC	1 cut(s)	295
BsmAI	GTCTC	4 cut(s)	412, 456, 608, 767
BsmBI	CGTCTC	2 cut(s)	412, 456
BsmFI	GGGAC	1 cut(s)	295
BsnI	GGCC	2 cut(s)	60, 588
Bso31I	GGTCTC	1 cut(s)	608
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	5 cut(s)	276, 417, 426, 445, 683
BspANI	GGCC	2 cut(s)	60, 588
BspCNI	CTCAG	1 cut(s)	615
BspFNI	CGCG	4 cut(s)	336, 352, 375, 620
BspLI	GGNNCC	3 cut(s)	435, 447, 587
BspPI	GGATC	3 cut(s)	440, 453, 691
BspQI	GCTCTTC	1 cut(s)	356
BspTNI	GGTCTC	1 cut(s)	608
BsrBI	CCGCTC	1 cut(s)	403
BsrFI	RCCGGY	2 cut(s)	293, 588
BssAI	RCCGGY	2 cut(s)	293, 588
BssECI	CCNNGG	2 cut(s)	477, 679
BssMI	GATC	5 cut(s)	276, 417, 426, 445, 683
BssNI	GRCGYC	2 cut(s)	297, 669
Bst4CI	ACNGT	1 cut(s)	532
Bst6I	CTCTTC	2 cut(s)	129, 356
BstACI	GRCGYC	2 cut(s)	297, 669
BstBAI	YACGTR	1 cut(s)	626
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	1 cut(s)	602
BstF5I	GGATG	2 cut(s)	97, 369
BstFNI	CGCG	4 cut(s)	336, 352, 375, 620
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	5 cut(s)	279, 420, 429, 448, 686
BstMAI	GTCTC	4 cut(s)	412, 456, 608, 767
BstMBI	GATC	5 cut(s)	276, 417, 426, 445, 683
BstMCI	CGRYCG	1 cut(s)	518
BstMWI	GCNNNNNNNGC	4 cut(s)	363, 372, 470, 473
BstSCI	CCNGG	1 cut(s)	678
BstUI	CGCG	4 cut(s)	336, 352, 375, 620
BstV1I	GCAGC	1 cut(s)	482
BstV2I	GAAGAC	1 cut(s)	313
BstX2I	RGATCY	2 cut(s)	445, 683
BstYI	RGATCY	2 cut(s)	445, 683
Bsu36I	CCTNAGG	1 cut(s)	602
BsuI	GTATCC	1 cut(s)	656
BsuRI	GGCC	2 cut(s)	60, 588
BtrI	CACGTC	1 cut(s)	574
BtsCI	GGATG	2 cut(s)	97, 369
BtsI	GCAGTG	1 cut(s)	776
BtsIMutI	CAGTG	1 cut(s)	776
Cac8I	GCNNGC	1 cut(s)	295
CfoI	GCGC	1 cut(s)	338
Cfr10I	RCCGGY	2 cut(s)	293, 588
Cfr13I	GGNCC	1 cut(s)	586
CseI	GACGC	4 cut(s)	286, 319, 341, 658
DdeI	CTNAG	1 cut(s)	602
DpnI	GATC	5 cut(s)	278, 419, 428, 447, 685
DpnII	GATC	5 cut(s)	276, 417, 426, 445, 683
Eam1104I	CTCTTC	2 cut(s)	129, 356
EarI	CTCTTC	2 cut(s)	129, 356
Ecl136II	GAGCTC	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	608
Eco53kI	GAGCTC	1 cut(s)	250
Eco72I	CACGTG	1 cut(s)	626
Eco81I	CCTNAGG	1 cut(s)	602
EcoICRI	GAGCTC	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	252
Esp3I	CGTCTC	2 cut(s)	412, 456
FaiI	YATR	2 cut(s)	597, 769
FaqI	GGGAC	1 cut(s)	295
FauI	CCCGC	2 cut(s)	408, 554
Fnu4HI	GCNGC	5 cut(s)	367, 465, 468, 471, 474
FokI	GGATG	2 cut(s)	84, 356
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	5 cut(s)	367, 465, 468, 471, 474
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	5 cut(s)	367, 465, 468, 471, 474
GsuI	CTGGAG	1 cut(s)	632
HaeIII	GGCC	2 cut(s)	60, 588
HapII	CCGG	7 cut(s)	170, 189, 294, 358, 390, 589, 679
HgaI	GACGC	4 cut(s)	286, 319, 341, 658
HhaI	GCGC	1 cut(s)	338
Hin1I	GRCGYC	2 cut(s)	297, 669
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HinfI	GANTC	4 cut(s)	185, 199, 630, 799
HpaII	CCGG	7 cut(s)	170, 189, 294, 358, 390, 589, 679
HphI	GGTGA	2 cut(s)	33, 226
Hpy166II	GTNNAC	1 cut(s)	676
Hpy188I	TCNGA	4 cut(s)	184, 210, 491, 810
Hpy188III	TCNNGA	3 cut(s)	274, 443, 715
Hpy8I	GTNNAC	1 cut(s)	676
Hpy99I	CGWCG	5 cut(s)	197, 275, 357, 532, 674
HpyAV	CCTTC	5 cut(s)	138, 499, 650, 731, 817
HpyCH4III	ACNGT	1 cut(s)	532
HpyCH4IV	ACGT	3 cut(s)	270, 573, 625
HpyCH4V	TGCA	1 cut(s)	691
HpyF10VI	GCNNNNNNNGC	4 cut(s)	363, 372, 470, 473
HpyF3I	CTNAG	1 cut(s)	602
HpySE526I	ACGT	3 cut(s)	270, 573, 625
Hsp92I	GRCGYC	2 cut(s)	297, 669
HspAI	GCGC	1 cut(s)	336
KroI	GCCGGC	1 cut(s)	293
KroNI	GCCGGC	1 cut(s)	295
Kzo9I	GATC	5 cut(s)	276, 417, 426, 445, 683
LguI	GCTCTTC	1 cut(s)	356
LmnI	GCTCC	4 cut(s)	255, 392, 433, 607
Lsp1109I	GCAGC	1 cut(s)	482
LweI	GCATC	1 cut(s)	378
MaeII	ACGT	3 cut(s)	270, 573, 625
MaeIII	GTNAC	3 cut(s)	39, 569, 741
MalI	GATC	5 cut(s)	278, 419, 428, 447, 685
MbiI	CCGCTC	1 cut(s)	403
MboI	GATC	5 cut(s)	276, 417, 426, 445, 683
MboII	GAAGA	3 cut(s)	116, 313, 373
MflI	RGATCY	2 cut(s)	445, 683
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	2 cut(s)	804, 812
MmeI	TCCRAC	2 cut(s)	162, 177
MreI	CGCCGGCG	1 cut(s)	293
MroNI	GCCGGC	1 cut(s)	293
MseI	TTAA	4 cut(s)	81, 108, 726, 815
MslI	CAYNNNNRTG	1 cut(s)	374
MspI	CCGG	7 cut(s)	170, 189, 294, 358, 390, 589, 679
MspR9I	CCNGG	1 cut(s)	680
MvnI	CGCG	4 cut(s)	336, 352, 375, 620
MwoI	GCNNNNNNNGC	4 cut(s)	363, 372, 470, 473
NaeI	GCCGGC	1 cut(s)	295
NciI	CCSGG	1 cut(s)	680
NdeII	GATC	5 cut(s)	276, 417, 426, 445, 683
NgoMIV	GCCGGC	1 cut(s)	293
NlaIV	GGNNCC	3 cut(s)	435, 447, 587
NmeAIII	GCCGAG	2 cut(s)	448, 502
NmuCI	GTSAC	2 cut(s)	39, 569
PciSI	GCTCTTC	1 cut(s)	356
PcsI	WCGNNNNNNNCGW	1 cut(s)	349
PdiI	GCCGGC	1 cut(s)	295
PfeI	GAWTC	4 cut(s)	185, 199, 630, 799
PkrI	GCNGC	5 cut(s)	368, 466, 469, 472, 475
PmaCI	CACGTG	1 cut(s)	626
PmlI	CACGTG	1 cut(s)	626
Ppu21I	YACGTR	1 cut(s)	626
Psp124BI	GAGCTC	1 cut(s)	252
PspCI	CACGTG	1 cut(s)	626
PspN4I	GGNNCC	3 cut(s)	435, 447, 587
PspPI	GGNCC	1 cut(s)	586
PsuI	RGATCY	2 cut(s)	445, 683
RseI	CAYNNNNRTG	1 cut(s)	374
SacI	GAGCTC	1 cut(s)	252
SapI	GCTCTTC	1 cut(s)	356
SaqAI	TTAA	4 cut(s)	81, 108, 726, 815
SatI	GCNGC	5 cut(s)	367, 465, 468, 471, 474
Sau3AI	GATC	5 cut(s)	276, 417, 426, 445, 683
Sau96I	GGNCC	1 cut(s)	586
ScrFI	CCNGG	1 cut(s)	680
SduI	GDGCHC	1 cut(s)	252
SfaNI	GCATC	1 cut(s)	378
SgrAI	CRCCGGYG	1 cut(s)	293
SmiMI	CAYNNNNRTG	1 cut(s)	374
SmlI	CTYRAG	2 cut(s)	144, 260
SmoI	CTYRAG	2 cut(s)	144, 260
Sse9I	AATT	2 cut(s)	804, 812
SstI	GAGCTC	1 cut(s)	252
StyD4I	CCNGG	1 cut(s)	678
TaaI	ACNGT	1 cut(s)	532
TaiI	ACGT	3 cut(s)	273, 576, 628
TaqI	TCGA	2 cut(s)	67, 75
TaqII	GACCGA	1 cut(s)	532
TasI	AATT	2 cut(s)	804, 812
TauI	GCSGC	4 cut(s)	369, 467, 470, 476
TfiI	GAWTC	4 cut(s)	185, 199, 630, 799
Tru1I	TTAA	4 cut(s)	81, 108, 726, 815
Tru9I	TTAA	4 cut(s)	81, 108, 726, 815
TscAI	CASTG	1 cut(s)	783
TseFI	GTSAC	2 cut(s)	39, 569
TseI	GCWGC	1 cut(s)	470
Tsp45I	GTSAC	2 cut(s)	39, 569
TspDTI	ATGAA	2 cut(s)	86, 776
TspGWI	ACGGA	1 cut(s)	438
TspRI	CASTG	1 cut(s)	783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.