Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0025677

Physical Location & Seq

Genomic Coordinates Reverse (-)

15009969 .. 15012884

Gene Structure 2916 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG125900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGTCCGTTGAAACCGCACTCTCTCTCTCTCTCTCTCTGTCACCAAAATCCTGTAATGGCCTAACTCGATTACTCGACTTTAACTTCAAGCCATTTCATCCCCCTTTTAACAAACACTCCTCTCTTCCTTCTCACATTTTCACTCAAGCCTCCAACTCCTCCACCTCGCCGGAAACAATGTCGGATTCCGGCGACGAGATTCCATCTCCGAACACCTCCCTCTCCCACAAGCTCACCTCCAAAACCGAGCTCCTCAACCTCAAGCTCTACGTCGTGATCGCAATCCTCCTCGCCGGCGTCTTTGCCGTGTCCCTCCTCGTCTTCCTCTGCGTCCGCGCCCATCGGGTTTCGCGTCGCCGGAAGAGCCGCATCCGCGTGAAGCACAGCTCCGGCTCAATCCCGCTCGTCTCCAAAGAGATCGCCGAGATCAAGGAGCCTCGTCTGGATCCGTCTCCTCCTCCTGCCGCCGCAGCCGCCGAGGGCAAAATCGGAAACCAAAAGTTGAAGGAAGCACGACCGACTGAACCGACGGTTGATGTGGAAAATGGGAAAAGGAGGTGCGGGGAGAGTGACGTGTTCGGGTGGGGCCGGTGGTATAGCCTCAGGGAGCTGGAGACCGCGACACGTGGATTCTCGCCAGAGAATGTGATTGGAGAAGGAGGATACGGCGTCGTTTACCGGGGATCTTTGCAAGACGGCTCTGTTGTCGCCGTCAAGAACCTTCTTAATAACAAGGGTCAAGCTCAGACAGAGTTTAAGGTGGAAGTGGAAGCCATAGGAAAAGTAAAGCATAAGAACTTGGTTGGTCTAATTGGTTATTGTGCAGAAGGTGCTCAAAGGATGCTTGTATATGAATATATTGACAATGGGAATTTGGAGCAGTGGTTGCATGGTGATGTTGGGCCTGTCAGCCCTCTGACTTGGGATATCAGAATGAAGATAGCCATTGGAACCGCAAAAGGGTGTGACAATTTTCTCCTCCTTGTTCAGTTCAGCTGTTCTGATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

336

Amino Acids

36.69

Weight (kDa)

8.93

Isoelectric Point (pI)

40.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	214 - 322	1.9e-16	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	214 - 297	1.7e-12	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025677)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0042714.1_g000001
rosa_samantha	Rh6BG127400 Rh6CG125900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	403
AccII	CGCG	4 cut(s)	336, 352, 375, 620
AclWI	GGATC	3 cut(s)	440, 453, 691
AcsI	RAATTY	1 cut(s)	871
AcvI	CACGTG	1 cut(s)	626
AcyI	GRCGYC	2 cut(s)	297, 669
AfiI	CCNNNNNNNGG	1 cut(s)	960
AflIII	ACRYGT	2 cut(s)	573, 623
AgsI	TTSAA	3 cut(s)	11, 88, 505
AjiI	CACGTC	1 cut(s)	574
AluBI	AGCT	7 cut(s)	232, 250, 265, 387, 610, 743, 996
AluI	AGCT	7 cut(s)	232, 250, 265, 387, 610, 743, 996
Alw21I	GWGCWC	2 cut(s)	252, 835
Alw26I	GTCTC	3 cut(s)	412, 456, 608
AlwI	GGATC	3 cut(s)	440, 453, 691
AoxI	GGCC	3 cut(s)	58, 586, 902
ApeKI	GCWGC	1 cut(s)	470
ApoI	RAATTY	1 cut(s)	871
AspLEI	GCGC	1 cut(s)	338
AspS9I	GGNCC	2 cut(s)	586, 902
AsuC2I	CCSGG	1 cut(s)	680
AsuHPI	GGTGA	3 cut(s)	33, 226, 905
AxyI	CCTNAGG	1 cut(s)	602
BamHI	GGATCC	1 cut(s)	445
BanII	GRGCYC	1 cut(s)	252
BbrPI	CACGTG	1 cut(s)	626
BbsI	GAAGAC	1 cut(s)	313
Bbv12I	GWGCWC	2 cut(s)	252, 835
BbvI	GCAGC	1 cut(s)	482
BccI	CCATC	2 cut(s)	211, 348
BceAI	ACGGC	4 cut(s)	290, 682, 695, 712
BciVI	GTATCC	1 cut(s)	656
BcnI	CCSGG	1 cut(s)	680
BcoDI	GTCTC	3 cut(s)	412, 456, 608
BfuI	GTATCC	1 cut(s)	656
BisI	GCNGC	5 cut(s)	367, 465, 468, 471, 474
BlsI	GCNGC	5 cut(s)	368, 466, 469, 472, 475
Bme1390I	CCNGG	1 cut(s)	680
BmgBI	CACGTC	1 cut(s)	574
BmgT120I	GGNCC	2 cut(s)	586, 902
BmiI	GGNNCC	4 cut(s)	435, 447, 587, 952
BmrFI	CCNGG	1 cut(s)	680
BmsI	GCATC	3 cut(s)	378, 831, 994
BpiI	GAAGAC	1 cut(s)	313
BpmI	CTGGAG	1 cut(s)	632
BpuEI	CTTGAG	2 cut(s)	129, 245
BpuMI	CCSGG	1 cut(s)	680
BsaAI	YACGTR	1 cut(s)	626
BsaBI	GATNNNNATC	1 cut(s)	281
BsaHI	GRCGYC	2 cut(s)	297, 669
BsaI	GGTCTC	1 cut(s)	608
BsaJI	CCNNGG	2 cut(s)	477, 679
BsaXI	ACNNNNNCTCC	4 cut(s)	101, 131, 869, 899
Bsc4I	CCNNNNNNNGG	1 cut(s)	960
Bse118I	RCCGGY	2 cut(s)	293, 588
Bse21I	CCTNAGG	1 cut(s)	602
Bse8I	GATNNNNATC	1 cut(s)	281
BseDI	CCNNGG	2 cut(s)	477, 679
BseGI	GGATG	3 cut(s)	97, 369, 846
BseJI	GATNNNNATC	1 cut(s)	281
BseLI	CCNNNNNNNGG	1 cut(s)	960
BseMII	CTCAG	2 cut(s)	616, 758
BseRI	GAGGAG	8 cut(s)	109, 148, 242, 278, 305, 444, 447, 968
BseXI	GCAGC	1 cut(s)	482
BsgI	GTGCAG	1 cut(s)	843
Bsh1236I	CGCG	4 cut(s)	336, 352, 375, 620
Bsh1285I	CGRYCG	1 cut(s)	518
BshFI	GGCC	3 cut(s)	60, 588, 904
BsiEI	CGRYCG	1 cut(s)	518
BsiHKAI	GWGCWC	2 cut(s)	252, 835
BsiSI	CCGG	7 cut(s)	170, 189, 294, 358, 390, 589, 679
BslFI	GGGAC	1 cut(s)	295
BslI	CCNNNNNNNGG	1 cut(s)	960
BsmAI	GTCTC	3 cut(s)	412, 456, 608
BsmBI	CGTCTC	2 cut(s)	412, 456
BsmFI	GGGAC	1 cut(s)	295
BsnI	GGCC	3 cut(s)	60, 588, 904
Bso31I	GGTCTC	1 cut(s)	608
Bsp1286I	GDGCHC	2 cut(s)	252, 835
Bsp143I	GATC	5 cut(s)	276, 417, 426, 445, 683
BspANI	GGCC	3 cut(s)	60, 588, 904
BspCNI	CTCAG	2 cut(s)	615, 757
BspFNI	CGCG	4 cut(s)	336, 352, 375, 620
BspLI	GGNNCC	4 cut(s)	435, 447, 587, 952
BspPI	GGATC	3 cut(s)	440, 453, 691
BspQI	GCTCTTC	1 cut(s)	356
BspTNI	GGTCTC	1 cut(s)	608
BsrBI	CCGCTC	1 cut(s)	403
BsrFI	RCCGGY	2 cut(s)	293, 588
BssAI	RCCGGY	2 cut(s)	293, 588
BssECI	CCNNGG	2 cut(s)	477, 679
BssMI	GATC	5 cut(s)	276, 417, 426, 445, 683
BssNI	GRCGYC	2 cut(s)	297, 669
Bst4CI	ACNGT	1 cut(s)	532
Bst6I	CTCTTC	2 cut(s)	129, 356
BstACI	GRCGYC	2 cut(s)	297, 669
BstAPI	GCANNNNNTGC	2 cut(s)	830, 886
BstBAI	YACGTR	1 cut(s)	626
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	2 cut(s)	602, 744
BstF5I	GGATG	3 cut(s)	97, 369, 846
BstFNI	CGCG	4 cut(s)	336, 352, 375, 620
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	5 cut(s)	279, 420, 429, 448, 686
BstMAI	GTCTC	3 cut(s)	412, 456, 608
BstMBI	GATC	5 cut(s)	276, 417, 426, 445, 683
BstMCI	CGRYCG	1 cut(s)	518
BstMWI	GCNNNNNNNGC	6 cut(s)	363, 372, 470, 473, 830, 886
BstSCI	CCNGG	1 cut(s)	678
BstUI	CGCG	4 cut(s)	336, 352, 375, 620
BstV1I	GCAGC	1 cut(s)	482
BstV2I	GAAGAC	1 cut(s)	313
BstX2I	RGATCY	2 cut(s)	445, 683
BstYI	RGATCY	2 cut(s)	445, 683
Bsu36I	CCTNAGG	1 cut(s)	602
BsuI	GTATCC	1 cut(s)	656
BsuRI	GGCC	3 cut(s)	60, 588, 904
BtrI	CACGTC	1 cut(s)	574
BtsCI	GGATG	3 cut(s)	97, 369, 846
BtsI	GCAGTG	1 cut(s)	887
BtsIMutI	CAGTG	1 cut(s)	887
Cac8I	GCNNGC	1 cut(s)	295
CfoI	GCGC	1 cut(s)	338
Cfr10I	RCCGGY	2 cut(s)	293, 588
Cfr13I	GGNCC	2 cut(s)	586, 902
CseI	GACGC	4 cut(s)	286, 319, 341, 658
CviAII	CATG	1 cut(s)	890
DdeI	CTNAG	2 cut(s)	602, 744
DpnI	GATC	5 cut(s)	278, 419, 428, 447, 685
DpnII	GATC	5 cut(s)	276, 417, 426, 445, 683
Eam1104I	CTCTTC	2 cut(s)	129, 356
EarI	CTCTTC	2 cut(s)	129, 356
Ecl136II	GAGCTC	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	608
Eco32I	GATATC	1 cut(s)	928
Eco53kI	GAGCTC	1 cut(s)	250
Eco72I	CACGTG	1 cut(s)	626
Eco81I	CCTNAGG	1 cut(s)	602
EcoICRI	GAGCTC	1 cut(s)	250
EcoRV	GATATC	1 cut(s)	928
EcoT38I	GRGCYC	1 cut(s)	252
Esp3I	CGTCTC	2 cut(s)	412, 456
FaeI	CATG	1 cut(s)	893
FaiI	YATR	7 cut(s)	597, 776, 792, 850, 852, 858, 891
FaqI	GGGAC	1 cut(s)	295
FatI	CATG	1 cut(s)	889
FauI	CCCGC	2 cut(s)	408, 554
Fnu4HI	GCNGC	5 cut(s)	367, 465, 468, 471, 474
FokI	GGATG	3 cut(s)	84, 356, 853
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	5 cut(s)	367, 465, 468, 471, 474
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	5 cut(s)	367, 465, 468, 471, 474
GsuI	CTGGAG	1 cut(s)	632
HaeIII	GGCC	3 cut(s)	60, 588, 904
HapII	CCGG	7 cut(s)	170, 189, 294, 358, 390, 589, 679
HgaI	GACGC	4 cut(s)	286, 319, 341, 658
HhaI	GCGC	1 cut(s)	338
Hin1I	GRCGYC	2 cut(s)	297, 669
Hin1II	CATG	1 cut(s)	893
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HinfI	GANTC	3 cut(s)	185, 199, 630
HpaII	CCGG	7 cut(s)	170, 189, 294, 358, 390, 589, 679
HphI	GGTGA	3 cut(s)	33, 226, 905
Hpy166II	GTNNAC	1 cut(s)	676
Hpy188I	TCNGA	7 cut(s)	184, 210, 491, 747, 918, 932, 1003
Hpy188III	TCNNGA	3 cut(s)	274, 443, 715
Hpy8I	GTNNAC	1 cut(s)	676
Hpy99I	CGWCG	5 cut(s)	197, 275, 357, 532, 674
HpyAV	CCTTC	5 cut(s)	138, 499, 650, 731, 821
HpyCH4III	ACNGT	1 cut(s)	532
HpyCH4IV	ACGT	3 cut(s)	270, 573, 625
HpyCH4V	TGCA	3 cut(s)	691, 824, 889
HpyF10VI	GCNNNNNNNGC	6 cut(s)	363, 372, 470, 473, 830, 886
HpyF3I	CTNAG	2 cut(s)	602, 744
HpySE526I	ACGT	3 cut(s)	270, 573, 625
Hsp92I	GRCGYC	2 cut(s)	297, 669
Hsp92II	CATG	1 cut(s)	893
HspAI	GCGC	1 cut(s)	336
KroI	GCCGGC	1 cut(s)	293
KroNI	GCCGGC	1 cut(s)	295
Kzo9I	GATC	5 cut(s)	276, 417, 426, 445, 683
LguI	GCTCTTC	1 cut(s)	356
LmnI	GCTCC	5 cut(s)	255, 392, 433, 607, 877
Lsp1109I	GCAGC	1 cut(s)	482
LweI	GCATC	3 cut(s)	378, 831, 994
MaeII	ACGT	3 cut(s)	270, 573, 625
MaeIII	GTNAC	3 cut(s)	39, 569, 965
MalI	GATC	5 cut(s)	278, 419, 428, 447, 685
MbiI	CCGCTC	1 cut(s)	403
MboI	GATC	5 cut(s)	276, 417, 426, 445, 683
MboII	GAAGA	4 cut(s)	116, 313, 373, 949
MflI	RGATCY	2 cut(s)	445, 683
MhlI	GDGCHC	2 cut(s)	252, 835
MluCI	AATT	3 cut(s)	810, 871, 970
MmeI	TCCRAC	2 cut(s)	162, 177
MreI	CGCCGGCG	1 cut(s)	293
MroNI	GCCGGC	1 cut(s)	293
MseI	TTAA	5 cut(s)	81, 108, 726, 756, 1009
MslI	CAYNNNNRTG	2 cut(s)	374, 894
MspA1I	CMGCKG	1 cut(s)	996
MspI	CCGG	7 cut(s)	170, 189, 294, 358, 390, 589, 679
MspR9I	CCNGG	1 cut(s)	680
MvnI	CGCG	4 cut(s)	336, 352, 375, 620
MwoI	GCNNNNNNNGC	6 cut(s)	363, 372, 470, 473, 830, 886
NaeI	GCCGGC	1 cut(s)	295
NciI	CCSGG	1 cut(s)	680
NdeII	GATC	5 cut(s)	276, 417, 426, 445, 683
NgoMIV	GCCGGC	1 cut(s)	293
NlaIII	CATG	1 cut(s)	893
NlaIV	GGNNCC	4 cut(s)	435, 447, 587, 952
NmeAIII	GCCGAG	2 cut(s)	448, 502
NmuCI	GTSAC	3 cut(s)	39, 569, 965
PciSI	GCTCTTC	1 cut(s)	356
PcsI	WCGNNNNNNNCGW	1 cut(s)	349
PdiI	GCCGGC	1 cut(s)	295
PfeI	GAWTC	3 cut(s)	185, 199, 630
PkrI	GCNGC	5 cut(s)	368, 466, 469, 472, 475
PmaCI	CACGTG	1 cut(s)	626
PmlI	CACGTG	1 cut(s)	626
Ppu21I	YACGTR	1 cut(s)	626
Psp124BI	GAGCTC	1 cut(s)	252
PspCI	CACGTG	1 cut(s)	626
PspN4I	GGNNCC	4 cut(s)	435, 447, 587, 952
PspPI	GGNCC	2 cut(s)	586, 902
PsuI	RGATCY	2 cut(s)	445, 683
PvuII	CAGCTG	1 cut(s)	996
RseI	CAYNNNNRTG	2 cut(s)	374, 894
SacI	GAGCTC	1 cut(s)	252
SapI	GCTCTTC	1 cut(s)	356
SaqAI	TTAA	5 cut(s)	81, 108, 726, 756, 1009
SatI	GCNGC	5 cut(s)	367, 465, 468, 471, 474
Sau3AI	GATC	5 cut(s)	276, 417, 426, 445, 683
Sau96I	GGNCC	2 cut(s)	586, 902
ScrFI	CCNGG	1 cut(s)	680
SduI	GDGCHC	2 cut(s)	252, 835
SfaNI	GCATC	3 cut(s)	378, 831, 994
SgrAI	CRCCGGYG	1 cut(s)	293
SmiMI	CAYNNNNRTG	2 cut(s)	374, 894
SmlI	CTYRAG	2 cut(s)	144, 260
SmoI	CTYRAG	2 cut(s)	144, 260
Sse9I	AATT	3 cut(s)	810, 871, 970
SstI	GAGCTC	1 cut(s)	252
StyD4I	CCNGG	1 cut(s)	678
TaaI	ACNGT	1 cut(s)	532
TaiI	ACGT	3 cut(s)	273, 576, 628
TaqI	TCGA	2 cut(s)	67, 75
TaqII	GACCGA	1 cut(s)	532
TasI	AATT	3 cut(s)	810, 871, 970
TauI	GCSGC	4 cut(s)	369, 467, 470, 476
TfiI	GAWTC	3 cut(s)	185, 199, 630
Tru1I	TTAA	5 cut(s)	81, 108, 726, 756, 1009
Tru9I	TTAA	5 cut(s)	81, 108, 726, 756, 1009
TscAI	CASTG	1 cut(s)	887
TseFI	GTSAC	3 cut(s)	39, 569, 965
TseI	GCWGC	1 cut(s)	470
Tsp45I	GTSAC	3 cut(s)	39, 569, 965
TspDTI	ATGAA	3 cut(s)	86, 867, 950
TspGWI	ACGGA	1 cut(s)	438
TspRI	CASTG	1 cut(s)	887
XapI	RAATTY	1 cut(s)	871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.