Rmu_ssc0000018.1_g000052

Integrator complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000018.1
OG0021613
Physical Location & Seq
Forward (+)
239023 .. 243363
4341 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 993 bp
atggctttgaacctgattcggattgcttcctatgaagctgaaaaccccgtgggctgctctctgaaggaggcctttgagcttcttgaaccaaaactaagacccccattggcaataacaatcccaaccccacaggaatacttgctgctcaacaaggctattttgtatggagttctatgcgaaacccattttgccaaaacacatattaagcatttacatgccattgtcattgatgggtatggcttgtttgctagtttgattgctaaggttgtgaatgaattgtacacgaaacttgttgacccagtgaaatgccagttgatttgggttactaaggagatgattgatgttcaggctgtaggcatccatggtttgttggtttgttttctgaggcaaattgttggtggggattttagtgatggaaatttgtgttatgatgtggaacataaagatataattattagaggcgtgtcttcatctcttcgtgtacttgtcaagaaaggagtgattcgctcctttgatgtgctgacatcttgtgatgcactttctcctgtcttgaaagagaggcttgataggtttttgttaggtgcgaaattggaaatttataaaaggctggaacaaactagatttcccaatccctttgctttggagaattcctcttgtatgggaactccgaccgcatcaccagaacgtgaacgagatagatttgctataagatcagctgatacttctgttatgatatcagatttgcaccaggctcattttctggggaagaaggtagatagctcaaagaaaaggaagtgggggacggaaagcagtcaaaatggttttgctgtgaacactgctagactgatcctgttcaagcacagttgctgccctattttgcatgagtcgagtgtggtagagcaattacctatccctttttccatgcatcttaaaatccagcttcagtcactgttctcattgaagatgagactggtcaagcacatgcagtcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ints3

Protein Analysis

330

Amino Acids

37.09

Weight (kDa)

8.97

Isoelectric Point (pI)

39.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ints3_N PF10189 45 - 141 4.3e-22 Integrator complex subunit 3 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021613)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004659.1_g000001 Rmu_sc0008949.1_g000006 Rmu_ssc0000018.1_g000052
rosa_samantha Rh2AG326600
rosa_wichuraiana Rw0G019050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 600
AciI CCGC 1 cut(s) 672
AclWI GGATC 1 cut(s) 841
AcsI RAATTY 3 cut(s) 418, 594, 646
AcuI CTGAAG 2 cut(s) 83, 926
AfaI GTAC 2 cut(s) 281, 483
AgsI TTSAA 5 cut(s) 10, 86, 553, 856, 961
AjnI CCWGG 1 cut(s) 747
AluBI AGCT 5 cut(s) 38, 79, 716, 780, 940
AluI AGCT 5 cut(s) 38, 79, 716, 780, 940
Alw26I GTCTC 1 cut(s) 961
AlwI GGATC 1 cut(s) 841
AlwNI CAGNNNCTG 2 cut(s) 867, 949
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 3 cut(s) 54, 142, 867
ApoI RAATTY 3 cut(s) 418, 594, 646
AsuHPI GGTGA 1 cut(s) 669
BaeI ACNNNNGTAYC 2 cut(s) 711, 744
BbsI GAAGAC 1 cut(s) 459
BbvI GCAGC 3 cut(s) 41, 129, 854
BccI CCATC 2 cut(s) 224, 407
BciT130I CCWGG 1 cut(s) 749
BcoDI GTCTC 1 cut(s) 961
BfaI CTAG 3 cut(s) 249, 618, 840
BfmI CTRYAG 1 cut(s) 351
BisI GCNGC 3 cut(s) 55, 143, 868
BlsI GCNGC 3 cut(s) 56, 144, 869
Bme1390I CCNGG 1 cut(s) 749
BmrFI CCNGG 1 cut(s) 749
BmrI ACTGGG 1 cut(s) 293
BmsI GCATC 4 cut(s) 366, 523, 683, 934
BmuI ACTGGG 1 cut(s) 293
BpiI GAAGAC 1 cut(s) 459
BplI GAGNNNNNCTC 2 cut(s) 635, 667
Bpu10I CCTNAGC 1 cut(s) 261
BsaJI CCNNGG 2 cut(s) 48, 361
Bse1I ACTGG 3 cut(s) 299, 310, 975
BseBI CCWGG 1 cut(s) 749
BseDI CCNNGG 2 cut(s) 48, 361
BseGI GGATG 1 cut(s) 357
BseMII CTCAG 1 cut(s) 374
BseNI ACTGG 3 cut(s) 299, 310, 975
BseXI GCAGC 3 cut(s) 41, 129, 854
Bsh1285I CGRYCG 1 cut(s) 672
BshFI GGCC 1 cut(s) 71
BsiEI CGRYCG 1 cut(s) 672
BslFI GGGAC 1 cut(s) 814
BsmAI GTCTC 1 cut(s) 961
BsmFI GGGAC 1 cut(s) 814
BsnI GGCC 1 cut(s) 71
Bsp1407I TGTACA 1 cut(s) 279
Bsp143I GATC 2 cut(s) 710, 846
Bsp19I CCATGG 1 cut(s) 361
BspACI CCGC 1 cut(s) 672
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 375
BspPI GGATC 1 cut(s) 841
BsrGI TGTACA 1 cut(s) 279
BsrI ACTGG 3 cut(s) 299, 310, 975
BssECI CCNNGG 2 cut(s) 48, 361
BssMI GATC 2 cut(s) 710, 846
BssT1I CCWWGG 1 cut(s) 361
Bst2UI CCWGG 1 cut(s) 749
Bst4CI ACNGT 2 cut(s) 863, 951
Bst6I CTCTTC 1 cut(s) 480
BstAUI TGTACA 1 cut(s) 279
BstDEI CTNAG 4 cut(s) 95, 261, 327, 383
BstDSI CCRYGG 2 cut(s) 48, 361
BstF5I GGATG 1 cut(s) 357
BstKTI GATC 2 cut(s) 713, 849
BstMAI GTCTC 1 cut(s) 961
BstMBI GATC 2 cut(s) 710, 846
BstMCI CGRYCG 1 cut(s) 672
BstNI CCWGG 1 cut(s) 749
BstNSI RCATGY 2 cut(s) 218, 985
BstSCI CCNGG 1 cut(s) 747
BstSFI CTRYAG 1 cut(s) 351
BstV1I GCAGC 3 cut(s) 41, 129, 854
BstV2I GAAGAC 1 cut(s) 459
BsuRI GGCC 1 cut(s) 71
BtgI CCRYGG 2 cut(s) 48, 361
BtsCI GGATG 1 cut(s) 357
BtsI GCAGTG 1 cut(s) 834
BtsIMutI CAGTG 3 cut(s) 306, 834, 947
CaiI CAGNNNCTG 2 cut(s) 867, 949
Csp6I GTAC 2 cut(s) 280, 482
CviAII CATG 5 cut(s) 215, 362, 881, 922, 982
CviQI GTAC 2 cut(s) 280, 482
DdeI CTNAG 4 cut(s) 95, 261, 327, 383
DpnI GATC 2 cut(s) 712, 848
DpnII GATC 2 cut(s) 710, 846
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
Eco130I CCWWGG 1 cut(s) 361
Eco147I AGGCCT 1 cut(s) 71
Eco32I GATATC 1 cut(s) 735
Eco57I CTGAAG 2 cut(s) 83, 926
EcoRI GAATTC 1 cut(s) 646
EcoRII CCWGG 1 cut(s) 747
EcoRV GATATC 1 cut(s) 735
EcoT14I CCWWGG 1 cut(s) 361
EcoT22I ATGCAT 1 cut(s) 927
ErhI CCWWGG 1 cut(s) 361
FaeI CATG 5 cut(s) 218, 365, 884, 925, 985
FalI AAGNNNNNCTT 4 cut(s) 56, 88, 546, 578
FaqI GGGAC 1 cut(s) 814
FatI CATG 5 cut(s) 214, 361, 880, 921, 981
Fnu4HI GCNGC 3 cut(s) 55, 143, 868
FokI GGATG 1 cut(s) 344
Fsp4HI GCNGC 3 cut(s) 55, 143, 868
FspBI CTAG 3 cut(s) 249, 618, 840
GluI GCNGC 3 cut(s) 55, 143, 868
HaeIII GGCC 1 cut(s) 71
Hin1II CATG 5 cut(s) 218, 365, 884, 925, 985
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HinfI GANTC 3 cut(s) 16, 502, 884
HphI GGTGA 1 cut(s) 669
Hpy166II GTNNAC 5 cut(s) 282, 295, 482, 689, 832
Hpy188I TCNGA 5 cut(s) 21, 63, 384, 669, 739
Hpy188III TCNNGA 3 cut(s) 83, 490, 550
Hpy8I GTNNAC 5 cut(s) 282, 295, 482, 689, 832
HpyAV CCTTC 2 cut(s) 58, 763
HpyCH4III ACNGT 2 cut(s) 863, 951
HpyCH4IV ACGT 1 cut(s) 685
HpyCH4V TGCA 5 cut(s) 536, 745, 880, 925, 985
HpyF3I CTNAG 4 cut(s) 95, 261, 327, 383
HpySE526I ACGT 1 cut(s) 685
Hsp92II CATG 5 cut(s) 218, 365, 884, 925, 985
Kzo9I GATC 2 cut(s) 710, 846
LmnI GCTCC 1 cut(s) 512
Lsp1109I GCAGC 3 cut(s) 41, 129, 854
LweI GCATC 4 cut(s) 366, 523, 683, 934
MaeI CTAG 3 cut(s) 249, 618, 840
MaeII ACGT 1 cut(s) 685
MaeIII GTNAC 2 cut(s) 322, 945
MalI GATC 2 cut(s) 712, 848
MboI GATC 2 cut(s) 710, 846
MboII GAAGA 4 cut(s) 459, 467, 778, 973
MluCI AATT 8 cut(s) 275, 390, 418, 450, 587, 594, 646, 902
MlyI GAGTC 1 cut(s) 893
MmeI TCCRAC 1 cut(s) 692
MnlI CCTC 5 cut(s) 61, 378, 452, 552, 661
Mph1103I ATGCAT 1 cut(s) 927
MseI TTAA 3 cut(s) 204, 930, 991
MslI CAYNNNNRTG 1 cut(s) 213
MspA1I CMGCKG 1 cut(s) 716
MspR9I CCNGG 1 cut(s) 749
MvaI CCWGG 1 cut(s) 749
NcoI CCATGG 1 cut(s) 361
NdeII GATC 2 cut(s) 710, 846
NlaIII CATG 5 cut(s) 218, 365, 884, 925, 985
NmuCI GTSAC 1 cut(s) 945
NsiI ATGCAT 1 cut(s) 927
NspI RCATGY 2 cut(s) 218, 985
PceI AGGCCT 1 cut(s) 71
PfeI GAWTC 2 cut(s) 16, 502
PkrI GCNGC 3 cut(s) 56, 144, 869
PleI GAGTC 1 cut(s) 892
PpsI GAGTC 1 cut(s) 892
PsiI TTATAA 1 cut(s) 600
Psp6I CCWGG 1 cut(s) 747
PspGI CCWGG 1 cut(s) 747
PstNI CAGNNNCTG 2 cut(s) 867, 949
PvuII CAGCTG 1 cut(s) 716
RsaI GTAC 2 cut(s) 281, 483
RsaNI GTAC 2 cut(s) 280, 482
RseI CAYNNNNRTG 1 cut(s) 213
SaqAI TTAA 3 cut(s) 204, 930, 991
SatI GCNGC 3 cut(s) 55, 143, 868
Sau3AI GATC 2 cut(s) 710, 846
SchI GAGTC 1 cut(s) 893
ScrFI CCNGG 1 cut(s) 749
SfaNI GCATC 4 cut(s) 366, 523, 683, 934
SfcI CTRYAG 1 cut(s) 351
SmiMI CAYNNNNRTG 1 cut(s) 213
Sse9I AATT 8 cut(s) 275, 390, 418, 450, 587, 594, 646, 902
SseBI AGGCCT 1 cut(s) 71
SsiI CCGC 1 cut(s) 672
SspMI CTAG 3 cut(s) 249, 618, 840
StuI AGGCCT 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 747
StyI CCWWGG 1 cut(s) 361
TaaI ACNGT 2 cut(s) 863, 951
TaiI ACGT 1 cut(s) 688
TaqI TCGA 1 cut(s) 887
TasI AATT 8 cut(s) 275, 390, 418, 450, 587, 594, 646, 902
TatI WGTACW 2 cut(s) 279, 481
TfiI GAWTC 2 cut(s) 16, 502
Tru1I TTAA 3 cut(s) 204, 930, 991
Tru9I TTAA 3 cut(s) 204, 930, 991
TscAI CASTG 3 cut(s) 306, 841, 954
TseFI GTSAC 1 cut(s) 945
TseI GCWGC 3 cut(s) 54, 142, 867
Tsp45I GTSAC 1 cut(s) 945
TspDTI ATGAA 3 cut(s) 48, 288, 459
TspGWI ACGGA 1 cut(s) 818
TspRI CASTG 3 cut(s) 306, 841, 954
XapI RAATTY 3 cut(s) 418, 594, 646
XceI RCATGY 2 cut(s) 218, 985
XspI CTAG 3 cut(s) 249, 618, 840
Zsp2I ATGCAT 1 cut(s) 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.