Rmu_ssc0000026.1_g000001

GDP-fucose protein O-fucosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000026.1
OG0022877
Physical Location & Seq
Forward (+)
362 .. 2341
1980 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1002 bp
atgaaagaatcaagtcccagcagtgagcccattgggcagaacatcataaagctgataagcaatctctgcttctcagcgttcgtcttctcagtccttatcatcaccgtgattgccatcacctaccaacccccagatccatggctcgagtctgctccggccttgacaaaactcttcactgaatccgagaacgctactttcaagaatgacaattccatccttaagaccggtgaggatttcattgccccggctgcccctccggagagccggatcaccgaggccctcccaaagtctccttctcctgctccatgcctcgccctccaaattgaaatcgccgaaaccacagacgaaactccaacaccaccaccaccaccaccaccgtccccaccgccaaacccgccttctacacttcttctgaccctgaaaacttccaagccaccttcaacctcaacagcctctaccactccgacgcaatcaccggaatgggcgggcggtgatgagctcgccgtcggagccgcagaggccgatggccttgactccttctcggttgatcaaggagaccaaatgcttgttgactttgccgaccaagaccatggagacaatctccatggtgggcgcgtcggtgacacggaggccgtcgtggaagttgacctcaatgttgaggcgcttgagccagaggttgatctcggggccgccgctgtggaccaagatggggcggagaccgatgcaggcgaggaggacgaggtctctgacgacggtggcctggagggtctcgtccttcatggcggcgccgccgtacttgacgacgatcgttttacctcagaatttctggatgaaggtgagtgcgagtgcgagtgcggtggacatttggggcggaagaaggtgaggctgttggggaggttgcggggtgttggggaaggagggaatgagatcagagatggacaagggtgggttttagaagccaacattttgagtttgattgtagggttgtttgggtctccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

333

Amino Acids

34.87

Weight (kDa)

4.05

Isoelectric Point (pI)

51.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022877)

Species Orthologous Gene IDs
rosa_laevigata RLG00000007356
rosa_multiflora Rmu_sc0001837.1_g000003 Rmu_ssc0000026.1_g000001
rosa_samantha Rh3AG165200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 785
AccII CGCG 1 cut(s) 615
AccIII TCCGGA 1 cut(s) 256
AclWI GGATC 2 cut(s) 128, 275
AcsI RAATTY 1 cut(s) 821
AcyI GRCGYC 1 cut(s) 786
AfaI GTAC 1 cut(s) 795
AfiI CCNNNNNNNGG 1 cut(s) 709
AflII CTTAAG 1 cut(s) 218
AgeI ACCGGT 1 cut(s) 224
AgsI TTSAA 3 cut(s) 199, 326, 441
AjnI CCWGG 1 cut(s) 759
AjuI GAANNNNNNNTTGG 4 cut(s) 277, 309, 382, 414
AluBI AGCT 2 cut(s) 52, 499
AluI AGCT 2 cut(s) 52, 499
Alw21I GWGCWC 1 cut(s) 501
Alw26I GTCTC 6 cut(s) 294, 549, 588, 710, 748, 773
AlwI GGATC 2 cut(s) 128, 275
Ama87I CYCGRG 2 cut(s) 143, 683
Aor13HI TCCGGA 1 cut(s) 256
AoxI GGCC 7 cut(s) 156, 276, 519, 526, 630, 687, 757
ApeKI GCWGC 1 cut(s) 248
ApoI RAATTY 1 cut(s) 821
AsiGI ACCGGT 1 cut(s) 224
AspLEI GCGC 3 cut(s) 615, 664, 788
AspS9I GGNCC 3 cut(s) 277, 687, 700
AsuC2I CCSGG 1 cut(s) 245
AsuHPI GGTGA 9 cut(s) 94, 109, 239, 262, 465, 503, 632, 848, 892
AvaI CYCGRG 2 cut(s) 143, 683
AvaII GGWCC 1 cut(s) 700
BanI GGYRCC 1 cut(s) 785
BanII GRGCYC 2 cut(s) 30, 501
BbsI GAAGAC 1 cut(s) 76
Bbv12I GWGCWC 1 cut(s) 501
BbvI GCAGC 1 cut(s) 235
BccI CCATC 5 cut(s) 122, 221, 518, 701, 929
BceAI ACGGC 3 cut(s) 488, 617, 776
BciT130I CCWGG 1 cut(s) 761
BclI TGATCA 1 cut(s) 547
BcnI CCSGG 1 cut(s) 245
BcoDI GTCTC 6 cut(s) 294, 549, 588, 710, 748, 773
BfoI RGCGCY 2 cut(s) 665, 789
BfrI CTTAAG 1 cut(s) 218
BglI GCCNNNNNGGC 2 cut(s) 34, 518
BisI GCNGC 6 cut(s) 249, 513, 690, 693, 784, 789
BlsI GCNGC 6 cut(s) 250, 514, 691, 694, 785, 790
Bme1390I CCNGG 2 cut(s) 245, 761
Bme18I GGWCC 1 cut(s) 700
BmeT110I CYCGRG 2 cut(s) 143, 683
BmgT120I GGNCC 3 cut(s) 277, 687, 700
BmiI GGNNCC 3 cut(s) 511, 688, 787
BmrFI CCNGG 2 cut(s) 245, 761
BmsI GCATC 1 cut(s) 712
BpiI GAAGAC 1 cut(s) 76
BplI GAGNNNNNCTC 2 cut(s) 585, 617
BpmI CTGGAG 1 cut(s) 782
BpuEI CTTGAG 1 cut(s) 686
BpuMI CCSGG 1 cut(s) 245
BsaBI GATNNNNATC 1 cut(s) 113
BsaHI GRCGYC 1 cut(s) 786
BsaI GGTCTC 4 cut(s) 549, 710, 748, 773
BsaJI CCNNGG 5 cut(s) 137, 243, 273, 589, 604
BsaWI WCCGGW 3 cut(s) 224, 256, 475
Bsc4I CCNNNNNNNGG 1 cut(s) 709
Bse118I RCCGGY 1 cut(s) 224
Bse3DI GCAATG 1 cut(s) 237
Bse8I GATNNNNATC 1 cut(s) 113
BseAI TCCGGA 1 cut(s) 256
BseBI CCWGG 1 cut(s) 761
BseDI CCNNGG 5 cut(s) 137, 243, 273, 589, 604
BseGI GGATG 2 cut(s) 213, 835
BseJI GATNNNNATC 1 cut(s) 113
BseLI CCNNNNNNNGG 1 cut(s) 709
BseMI GCAATG 1 cut(s) 237
BseMII CTCAG 3 cut(s) 87, 102, 831
BseRI GAGGAG 1 cut(s) 746
BseXI GCAGC 1 cut(s) 235
BseYI CCCAGC 1 cut(s) 17
Bsh1236I CGCG 1 cut(s) 615
Bsh1285I CGRYCG 1 cut(s) 808
BshFI GGCC 7 cut(s) 158, 278, 521, 528, 632, 689, 759
BshNI GGYRCC 1 cut(s) 785
BshTI ACCGGT 1 cut(s) 224
BsiEI CGRYCG 1 cut(s) 808
BsiHKAI GWGCWC 1 cut(s) 501
BsiHKCI CYCGRG 2 cut(s) 143, 683
BsiSI CCGG 6 cut(s) 155, 225, 245, 257, 265, 476
BslFI GGGAC 1 cut(s) 364
BslI CCNNNNNNNGG 1 cut(s) 709
BsmAI GTCTC 6 cut(s) 294, 549, 588, 710, 748, 773
BsmFI GGGAC 1 cut(s) 364
BsnI GGCC 7 cut(s) 158, 278, 521, 528, 632, 689, 759
Bso31I GGTCTC 4 cut(s) 549, 710, 748, 773
BsoBI CYCGRG 2 cut(s) 143, 683
Bsp1286I GDGCHC 2 cut(s) 30, 501
Bsp13I TCCGGA 1 cut(s) 256
Bsp143I GATC 6 cut(s) 133, 267, 547, 679, 805, 927
Bsp19I CCATGG 3 cut(s) 137, 589, 604
BspANI GGCC 7 cut(s) 158, 278, 521, 528, 632, 689, 759
BspCNI CTCAG 3 cut(s) 86, 101, 830
BspEI TCCGGA 1 cut(s) 256
BspFNI CGCG 1 cut(s) 615
BspLI GGNNCC 3 cut(s) 511, 688, 787
BspPI GGATC 2 cut(s) 128, 275
BspT107I GGYRCC 1 cut(s) 785
BspTI CTTAAG 1 cut(s) 218
BspTNI GGTCTC 4 cut(s) 549, 710, 748, 773
BsrDI GCAATG 1 cut(s) 237
BsrFI RCCGGY 1 cut(s) 224
BssAI RCCGGY 1 cut(s) 224
BssECI CCNNGG 5 cut(s) 137, 243, 273, 589, 604
BssMI GATC 6 cut(s) 133, 267, 547, 679, 805, 927
BssNI GRCGYC 1 cut(s) 786
BssT1I CCWWGG 3 cut(s) 137, 589, 604
Bst2UI CCWGG 1 cut(s) 761
Bst4CI ACNGT 3 cut(s) 106, 378, 755
Bst6I CTCTTC 1 cut(s) 176
BstACI GRCGYC 1 cut(s) 786
BstAFI CTTAAG 1 cut(s) 218
BstAPI GCANNNNNTGC 1 cut(s) 66
BstC8I GCNNGC 3 cut(s) 487, 501, 727
BstDEI CTNAG 3 cut(s) 73, 88, 817
BstDSI CCRYGG 3 cut(s) 137, 589, 604
BstF5I GGATG 2 cut(s) 213, 835
BstFNI CGCG 1 cut(s) 615
BstH2I RGCGCY 2 cut(s) 665, 789
BstHHI GCGC 3 cut(s) 615, 664, 788
BstKTI GATC 6 cut(s) 136, 270, 550, 682, 808, 930
BstMAI GTCTC 6 cut(s) 294, 549, 588, 710, 748, 773
BstMBI GATC 6 cut(s) 133, 267, 547, 679, 805, 927
BstMCI CGRYCG 1 cut(s) 808
BstMWI GCNNNNNNNGC 6 cut(s) 34, 66, 248, 394, 509, 518
BstNI CCWGG 1 cut(s) 761
BstSCI CCNGG 2 cut(s) 243, 759
BstUI CGCG 1 cut(s) 615
BstV1I GCAGC 1 cut(s) 235
BstV2I GAAGAC 1 cut(s) 76
BstX2I RGATCY 1 cut(s) 133
BstXI CCANNNNNNTGG 2 cut(s) 138, 590
BstYI RGATCY 1 cut(s) 133
BsuRI GGCC 7 cut(s) 158, 278, 521, 528, 632, 689, 759
BtgI CCRYGG 3 cut(s) 137, 589, 604
BtsCI GGATG 2 cut(s) 213, 835
BtsI GCAGTG 1 cut(s) 28
BtsIMutI CAGTG 2 cut(s) 28, 174
Cac8I GCNNGC 3 cut(s) 487, 501, 727
CfoI GCGC 3 cut(s) 615, 664, 788
Cfr10I RCCGGY 1 cut(s) 224
Cfr13I GGNCC 3 cut(s) 277, 687, 700
CseI GACGC 2 cut(s) 475, 604
Csp6I GTAC 1 cut(s) 794
CspAI ACCGGT 1 cut(s) 224
CviAII CATG 5 cut(s) 138, 306, 590, 605, 779
CviQI GTAC 1 cut(s) 794
DdeI CTNAG 3 cut(s) 73, 88, 817
DinI GGCGCC 1 cut(s) 787
DpnI GATC 6 cut(s) 135, 269, 549, 681, 807, 929
DpnII GATC 6 cut(s) 133, 267, 547, 679, 805, 927
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
EciI GGCGGA 2 cut(s) 728, 886
Ecl136II GAGCTC 1 cut(s) 499
Eco130I CCWWGG 3 cut(s) 137, 589, 604
Eco24I GRGCYC 2 cut(s) 30, 501
Eco31I GGTCTC 4 cut(s) 549, 710, 748, 773
Eco47I GGWCC 1 cut(s) 700
Eco53kI GAGCTC 1 cut(s) 499
Eco88I CYCGRG 2 cut(s) 143, 683
EcoICRI GAGCTC 1 cut(s) 499
EcoO109I RGGNCCY 1 cut(s) 277
EcoRII CCWGG 1 cut(s) 759
EcoT14I CCWWGG 3 cut(s) 137, 589, 604
EcoT38I GRGCYC 2 cut(s) 30, 501
EgeI GGCGCC 1 cut(s) 787
EheI GGCGCC 1 cut(s) 787
ErhI CCWWGG 3 cut(s) 137, 589, 604
FaeI CATG 5 cut(s) 141, 309, 593, 608, 782
FaiI YATR 6 cut(s) 47, 139, 307, 591, 606, 780
FaqI GGGAC 1 cut(s) 364
FatI CATG 5 cut(s) 137, 305, 589, 604, 778
FauI CCCGC 3 cut(s) 402, 478, 894
FbaI TGATCA 1 cut(s) 547
Fnu4HI GCNGC 6 cut(s) 249, 513, 690, 693, 784, 789
FokI GGATG 2 cut(s) 200, 842
FriOI GRGCYC 2 cut(s) 30, 501
Fsp4HI GCNGC 6 cut(s) 249, 513, 690, 693, 784, 789
GlaI GCGC 3 cut(s) 614, 663, 787
GluI GCNGC 6 cut(s) 249, 513, 690, 693, 784, 789
GsaI CCCAGC 1 cut(s) 21
GsuI CTGGAG 1 cut(s) 782
HaeII RGCGCY 2 cut(s) 665, 789
HaeIII GGCC 7 cut(s) 158, 278, 521, 528, 632, 689, 759
HapII CCGG 6 cut(s) 155, 225, 245, 257, 265, 476
HgaI GACGC 2 cut(s) 475, 604
HhaI GCGC 3 cut(s) 615, 664, 788
Hin1I GRCGYC 1 cut(s) 786
Hin1II CATG 5 cut(s) 141, 309, 593, 608, 782
Hin6I GCGC 3 cut(s) 613, 662, 786
HinP1I GCGC 3 cut(s) 613, 662, 786
HincII GTYRAC 2 cut(s) 571, 646
HindII GTYRAC 2 cut(s) 571, 646
HinfI GANTC 4 cut(s) 8, 146, 179, 533
HpaII CCGG 6 cut(s) 155, 225, 245, 257, 265, 476
HphI GGTGA 9 cut(s) 94, 109, 239, 262, 465, 503, 632, 848, 892
Hpy166II GTNNAC 4 cut(s) 571, 646, 700, 860
Hpy188I TCNGA 7 cut(s) 184, 414, 465, 509, 748, 820, 932
Hpy188III TCNNGA 3 cut(s) 199, 257, 827
Hpy8I GTNNAC 4 cut(s) 571, 646, 700, 860
Hpy99I CGWCG 6 cut(s) 469, 509, 620, 638, 755, 806
HpyAV CCTTC 8 cut(s) 303, 408, 447, 547, 785, 827, 871, 908
HpyCH4III ACNGT 3 cut(s) 106, 378, 755
HpyCH4V TGCA 1 cut(s) 725
HpyF10VI GCNNNNNNNGC 6 cut(s) 34, 66, 248, 394, 509, 518
HpyF3I CTNAG 3 cut(s) 73, 88, 817
Hsp92I GRCGYC 1 cut(s) 786
Hsp92II CATG 5 cut(s) 141, 309, 593, 608, 782
HspAI GCGC 3 cut(s) 613, 662, 786
KasI GGCGCC 1 cut(s) 785
Kpn2I TCCGGA 1 cut(s) 256
Ksp22I TGATCA 1 cut(s) 547
Kzo9I GATC 6 cut(s) 133, 267, 547, 679, 805, 927
LmnI GCTCC 3 cut(s) 157, 307, 509
Lsp1109I GCAGC 1 cut(s) 235
LweI GCATC 1 cut(s) 712
MaeIII GTNAC 1 cut(s) 620
MalI GATC 6 cut(s) 135, 269, 549, 681, 807, 929
MboI GATC 6 cut(s) 133, 267, 547, 679, 805, 927
MboII GAAGA 4 cut(s) 76, 163, 401, 886
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 2 cut(s) 30, 501
MluCI AATT 3 cut(s) 208, 321, 821
Mly113I GGCGCC 1 cut(s) 786
MlyI GAGTC 2 cut(s) 155, 527
MmeI TCCRAC 3 cut(s) 377, 487, 488
MroI TCCGGA 1 cut(s) 256
MseI TTAA 1 cut(s) 219
MslI CAYNNNNRTG 2 cut(s) 104, 478
MspA1I CMGCKG 1 cut(s) 695
MspCI CTTAAG 1 cut(s) 218
MspI CCGG 6 cut(s) 155, 225, 245, 257, 265, 476
MspR9I CCNGG 2 cut(s) 245, 761
MvaI CCWGG 1 cut(s) 761
MvnI CGCG 1 cut(s) 615
MwoI GCNNNNNNNGC 6 cut(s) 34, 66, 248, 394, 509, 518
NarI GGCGCC 1 cut(s) 786
NciI CCSGG 1 cut(s) 245
NcoI CCATGG 3 cut(s) 137, 589, 604
NdeII GATC 6 cut(s) 133, 267, 547, 679, 805, 927
NlaIII CATG 5 cut(s) 141, 309, 593, 608, 782
NlaIV GGNNCC 3 cut(s) 511, 688, 787
NmuCI GTSAC 1 cut(s) 620
PaeR7I CTCGAG 1 cut(s) 143
PfeI GAWTC 2 cut(s) 8, 179
PflFI GACNNNGTC 1 cut(s) 740
PinAI ACCGGT 1 cut(s) 224
PkrI GCNGC 6 cut(s) 250, 514, 691, 694, 785, 790
Ple19I CGATCG 1 cut(s) 808
PleI GAGTC 2 cut(s) 154, 527
PluTI GGCGCC 1 cut(s) 789
PpsI GAGTC 2 cut(s) 154, 527
Psp124BI GAGCTC 1 cut(s) 501
Psp6I CCWGG 1 cut(s) 759
PspFI CCCAGC 1 cut(s) 17
PspGI CCWGG 1 cut(s) 759
PspN4I GGNNCC 3 cut(s) 511, 688, 787
PspPI GGNCC 3 cut(s) 277, 687, 700
PspXI VCTCGAGB 1 cut(s) 143
PsuI RGATCY 1 cut(s) 133
PsyI GACNNNGTC 1 cut(s) 740
PvuI CGATCG 1 cut(s) 808
RsaI GTAC 1 cut(s) 795
RsaNI GTAC 1 cut(s) 794
RseI CAYNNNNRTG 2 cut(s) 104, 478
SacI GAGCTC 1 cut(s) 501
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 6 cut(s) 249, 513, 690, 693, 784, 789
Sau3AI GATC 6 cut(s) 133, 267, 547, 679, 805, 927
Sau96I GGNCC 3 cut(s) 277, 687, 700
SchI GAGTC 2 cut(s) 155, 527
ScrFI CCNGG 2 cut(s) 245, 761
SduI GDGCHC 2 cut(s) 30, 501
SfaNI GCATC 1 cut(s) 712
SfoI GGCGCC 1 cut(s) 787
Sfr274I CTCGAG 1 cut(s) 143
SinI GGWCC 1 cut(s) 700
SlaI CTCGAG 1 cut(s) 143
SmiMI CAYNNNNRTG 2 cut(s) 104, 478
SmlI CTYRAG 3 cut(s) 143, 218, 665
SmoI CTYRAG 3 cut(s) 143, 218, 665
Sse9I AATT 3 cut(s) 208, 321, 821
SspDI GGCGCC 1 cut(s) 785
SstI GAGCTC 1 cut(s) 501
StyD4I CCNGG 2 cut(s) 243, 759
StyI CCWWGG 3 cut(s) 137, 589, 604
TaaI ACNGT 3 cut(s) 106, 378, 755
TaqI TCGA 1 cut(s) 144
TaqII GACCGA 1 cut(s) 734
TasI AATT 3 cut(s) 208, 321, 821
TauI GCSGC 5 cut(s) 515, 692, 695, 786, 791
TfiI GAWTC 2 cut(s) 8, 179
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 2 cut(s) 28, 181
TseFI GTSAC 1 cut(s) 620
TseI GCWGC 1 cut(s) 248
Tsp45I GTSAC 1 cut(s) 620
TspDTI ATGAA 4 cut(s) 17, 226, 767, 846
TspGWI ACGGA 1 cut(s) 641
TspRI CASTG 2 cut(s) 28, 181
Tth111I GACNNNGTC 1 cut(s) 740
Vha464I CTTAAG 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 700
XapI RAATTY 1 cut(s) 821
XhoI CTCGAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.