Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000087.1

Orthogroup ID

OG0025449

Physical Location & Seq

Genomic Coordinates Forward (+)

109611 .. 110198

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000087.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atgggttttctccctgcagccaatggtcttttggtactttacattaccatcattctctttcagctgtactatggggatgactgggaaggcatttttgaggcaaatactggctatggtcttggtgaatcagcaatacctcttttcggaagagtaggtggtggtatctatgccagggctgctgatgttagtgccgaccttgttaaaaaatttgaaagaaacattcctgctgatgacccaagaaacccagtggtgattgctgacaatgttatacatcgaacttccgtcaatcgcacggtgacgattctcatcttaaaatcccagaagcacaaacactctatgtctgcaataggaagtgcaatgggtcctagttctgaaggctatgaagcagaagttgcagatgggatgattaaagcaatgaaagggcgtggaatggtttctcctgattgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009678 GO:0009705 GO:0009914 GO:0009926 GO:0009941 GO:0010008 GO:0010035 GO:0010248 GO:0010817 GO:0012505 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0022804 GO:0022857 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044433 GO:0044434 GO:0044435 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0097708 GO:0098588 GO:0098805 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

H_PPase

Protein Analysis

149

Amino Acids

15.99

Weight (kDa)

5.87

Isoelectric Point (pI)

27.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025449)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_ssc0000087.1_g000011 Rmu_ssc0000087.1_g000019
rosa_samantha	Rh6CG021200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	206
AcuI	CTGAAG	1 cut(s)	393
AfaI	GTAC	2 cut(s)	36, 68
AfiI	CCNNNNNNNGG	1 cut(s)	143
AgsI	TTSAA	1 cut(s)	212
AjnI	CCWGG	1 cut(s)	170
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
ApeKI	GCWGC	2 cut(s)	17, 176
ApoI	RAATTY	1 cut(s)	206
Asp700I	GAANNNNTTC	1 cut(s)	433
AspS9I	GGNCC	1 cut(s)	362
AsuHPI	GGTGA	3 cut(s)	134, 262, 307
AvaII	GGWCC	1 cut(s)	362
BbvI	GCAGC	2 cut(s)	29, 163
BccI	CCATC	2 cut(s)	56, 392
BciT130I	CCWGG	1 cut(s)	172
BfaI	CTAG	1 cut(s)	366
BfmI	CTRYAG	1 cut(s)	15
BisI	GCNGC	2 cut(s)	18, 177
BlsI	GCNGC	2 cut(s)	19, 178
Bme1390I	CCNGG	1 cut(s)	172
Bme18I	GGWCC	1 cut(s)	362
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	1 cut(s)	363
BmrFI	CCNGG	1 cut(s)	172
BmrI	ACTGGG	2 cut(s)	91, 239
BmuI	ACTGGG	2 cut(s)	91, 239
BsaBI	GATNNNNATC	1 cut(s)	305
BsaJI	CCNNGG	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse1I	ACTGG	3 cut(s)	86, 112, 245
Bse3DI	GCAATG	2 cut(s)	363, 420
Bse8I	GATNNNNATC	1 cut(s)	305
BseBI	CCWGG	1 cut(s)	172
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	2 cut(s)	82, 408
BseJI	GATNNNNATC	1 cut(s)	305
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMI	GCAATG	2 cut(s)	363, 420
BseNI	ACTGG	3 cut(s)	86, 112, 245
BseXI	GCAGC	2 cut(s)	29, 163
BslI	CCNNNNNNNGG	1 cut(s)	143
BspLI	GGNNCC	1 cut(s)	363
BspMAI	CTGCAG	1 cut(s)	19
BsrDI	GCAATG	2 cut(s)	363, 420
BsrI	ACTGG	3 cut(s)	86, 112, 245
BssECI	CCNNGG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	172
Bst4CI	ACNGT	1 cut(s)	295
Bst6I	CTCTTC	1 cut(s)	142
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstF5I	GGATG	2 cut(s)	82, 408
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 392
BstNI	CCWGG	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	170
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	2 cut(s)	29, 163
BtsCI	GGATG	2 cut(s)	82, 408
BtsIMutI	CAGTG	1 cut(s)	252
Cfr13I	GGNCC	1 cut(s)	362
Csp6I	GTAC	2 cut(s)	35, 67
CviJI	RGCY	5 cut(s)	20, 64, 111, 176, 378
CviKI_1	RGCY	5 cut(s)	20, 64, 111, 176, 378
CviQI	GTAC	2 cut(s)	35, 67
Eam1104I	CTCTTC	1 cut(s)	142
EarI	CTCTTC	1 cut(s)	142
Eco47I	GGWCC	1 cut(s)	362
Eco57I	CTGAAG	1 cut(s)	393
EcoO109I	RGGNCCY	1 cut(s)	362
EcoRII	CCWGG	1 cut(s)	170
FaiI	YATR	6 cut(s)	72, 114, 168, 269, 338, 381
Fnu4HI	GCNGC	2 cut(s)	18, 177
FokI	GGATG	2 cut(s)	89, 415
Fsp4HI	GCNGC	2 cut(s)	18, 177
FspBI	CTAG	1 cut(s)	366
GluI	GCNGC	2 cut(s)	18, 177
HinfI	GANTC	2 cut(s)	125, 301
HphI	GGTGA	3 cut(s)	134, 262, 307
Hpy188I	TCNGA	2 cut(s)	146, 373
Hpy188III	TCNNGA	1 cut(s)	440
HpyAV	CCTTC	2 cut(s)	80, 368
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4V	TGCA	4 cut(s)	17, 344, 356, 395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 392
LpnPI	CCDG	8 cut(s)	27, 67, 93, 157, 184, 237, 258, 332
Lsp1109I	GCAGC	2 cut(s)	29, 163
MaeI	CTAG	1 cut(s)	366
MaeIII	GTNAC	1 cut(s)	295
MboII	GAAGA	1 cut(s)	159
MluCI	AATT	1 cut(s)	206
MnlI	CCTC	2 cut(s)	91, 147
MroXI	GAANNNNTTC	1 cut(s)	433
MseI	TTAA	3 cut(s)	201, 311, 408
MspA1I	CMGCKG	1 cut(s)	64
MspR9I	CCNGG	1 cut(s)	172
MvaI	CCWGG	1 cut(s)	172
MwoI	GCNNNNNNNGC	2 cut(s)	176, 392
NlaIV	GGNNCC	1 cut(s)	363
NmuCI	GTSAC	1 cut(s)	295
PdmI	GAANNNNTTC	1 cut(s)	433
PfeI	GAWTC	2 cut(s)	125, 301
PkrI	GCNGC	2 cut(s)	19, 178
PpuMI	RGGWCCY	1 cut(s)	362
Psp5II	RGGWCCY	1 cut(s)	362
Psp6I	CCWGG	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	363
PspPI	GGNCC	1 cut(s)	362
PspPPI	RGGWCCY	1 cut(s)	362
PstI	CTGCAG	1 cut(s)	19
PvuII	CAGCTG	1 cut(s)	64
RsaI	GTAC	2 cut(s)	36, 68
RsaNI	GTAC	2 cut(s)	35, 67
SaqAI	TTAA	3 cut(s)	201, 311, 408
SatI	GCNGC	2 cut(s)	18, 177
Sau96I	GGNCC	1 cut(s)	362
ScrFI	CCNGG	1 cut(s)	172
SetI	ASST	4 cut(s)	66, 139, 157, 198
SfcI	CTRYAG	1 cut(s)	15
SinI	GGWCC	1 cut(s)	362
Sse9I	AATT	1 cut(s)	206
SspMI	CTAG	1 cut(s)	366
StyD4I	CCNGG	1 cut(s)	170
TaaI	ACNGT	1 cut(s)	295
TaqI	TCGA	1 cut(s)	274
TasI	AATT	1 cut(s)	206
TatI	WGTACW	1 cut(s)	66
TfiI	GAWTC	2 cut(s)	125, 301
Tru1I	TTAA	3 cut(s)	201, 311, 408
Tru9I	TTAA	3 cut(s)	201, 311, 408
TscAI	CASTG	1 cut(s)	252
TseFI	GTSAC	1 cut(s)	295
TseI	GCWGC	2 cut(s)	17, 176
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	2 cut(s)	396, 431
TspGWI	ACGGA	1 cut(s)	271
TspRI	CASTG	1 cut(s)	252
VpaK11BI	GGWCC	1 cut(s)	362
XapI	RAATTY	1 cut(s)	206
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
XmnI	GAANNNNTTC	1 cut(s)	433
XspI	CTAG	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.