Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0025449

Physical Location & Seq

Genomic Coordinates Reverse (-)

1979120 .. 1979559

Gene Structure 440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG021200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGGTTTTCTCCTTGCAGCCAATGGTCTTTTGGTACTTTACATTACCATCATTCTCTTTCAGCTGTACTATGGGGATGACTGGGAAGGCATTTTTGAGGCAAATACTGGCTATGGTCTTGGTGGATCAGCAATGGCTCTTTTCGGAAGAGTAGGTGGTGGTATCTATGCCAAGGCTGCTGATGTTAGTGCCGACCTTGTTAAAAAATTTGAAAGAAACATTCCTGCTGATGACCCAAGAAACCCAGTTGTGATTGCTGACAATGTTGCCATGTTGGTGATAATACTGGGGATATATCCAAGGCTTTGGAAGGTAAAATATTGCCTTATCTTGACGGGATACCCCAGCTCCTCAAGAATTTGTCAAGCAACAAGTTGCACCGATCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009678 GO:0009705 GO:0009914 GO:0009926 GO:0009941 GO:0010008 GO:0010035 GO:0010248 GO:0010817 GO:0012505 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0022804 GO:0022857 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044433 GO:0044434 GO:0044435 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0097708 GO:0098588 GO:0098805 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

H_PPase

Protein Analysis

129

Amino Acids

13.99

Weight (kDa)

5.19

Isoelectric Point (pI)

31.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
H_PPase	PF03030	1 - 89	3.9e-29	Inorganic H+ pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025449)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_ssc0000087.1_g000011 Rmu_ssc0000087.1_g000019
rosa_samantha	Rh6CG021200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	133
AcsI	RAATTY	2 cut(s)	206, 357
AfaI	GTAC	2 cut(s)	36, 68
AgsI	TTSAA	1 cut(s)	212
AluBI	AGCT	2 cut(s)	64, 348
AluI	AGCT	2 cut(s)	64, 348
AlwI	GGATC	1 cut(s)	133
ApeKI	GCWGC	2 cut(s)	17, 176
ApoI	RAATTY	2 cut(s)	206, 357
AsuHPI	GGTGA	1 cut(s)	289
BbvI	GCAGC	2 cut(s)	29, 163
BccI	CCATC	1 cut(s)	56
BciVI	GTATCC	1 cut(s)	332
BfuI	GTATCC	1 cut(s)	332
BisI	GCNGC	2 cut(s)	18, 177
BlsI	GCNGC	2 cut(s)	19, 178
BmrI	ACTGGG	3 cut(s)	91, 239, 296
BmuI	ACTGGG	3 cut(s)	91, 239, 296
BpuEI	CTTGAG	1 cut(s)	337
BsaJI	CCNNGG	2 cut(s)	171, 299
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bse1I	ACTGG	4 cut(s)	86, 112, 245, 291
Bse3DI	GCAATG	1 cut(s)	138
BseDI	CCNNGG	2 cut(s)	171, 299
BseGI	GGATG	1 cut(s)	82
BseMI	GCAATG	1 cut(s)	138
BseNI	ACTGG	4 cut(s)	86, 112, 245, 291
BseRI	GAGGAG	1 cut(s)	340
BseXI	GCAGC	2 cut(s)	29, 163
BseYI	CCCAGC	1 cut(s)	344
Bsp143I	GATC	2 cut(s)	125, 382
BspPI	GGATC	1 cut(s)	133
BsrDI	GCAATG	1 cut(s)	138
BsrI	ACTGG	4 cut(s)	86, 112, 245, 291
BssECI	CCNNGG	2 cut(s)	171, 299
BssMI	GATC	2 cut(s)	125, 382
BssT1I	CCWWGG	2 cut(s)	171, 299
Bst6I	CTCTTC	1 cut(s)	142
BstF5I	GGATG	1 cut(s)	82
BstKTI	GATC	2 cut(s)	128, 385
BstMBI	GATC	2 cut(s)	125, 382
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstV1I	GCAGC	2 cut(s)	29, 163
BstXI	CCANNNNNNTGG	1 cut(s)	306
BsuI	GTATCC	1 cut(s)	332
BtsCI	GGATG	1 cut(s)	82
Csp6I	GTAC	2 cut(s)	35, 67
CviAII	CATG	1 cut(s)	271
CviJI	RGCY	7 cut(s)	20, 64, 111, 137, 176, 304, 348
CviKI_1	RGCY	7 cut(s)	20, 64, 111, 137, 176, 304, 348
CviQI	GTAC	2 cut(s)	35, 67
DpnI	GATC	2 cut(s)	127, 384
DpnII	GATC	2 cut(s)	125, 382
Eam1104I	CTCTTC	1 cut(s)	142
EarI	CTCTTC	1 cut(s)	142
Eco130I	CCWWGG	2 cut(s)	171, 299
EcoT14I	CCWWGG	2 cut(s)	171, 299
ErhI	CCWWGG	2 cut(s)	171, 299
FaeI	CATG	1 cut(s)	274
FaiI	YATR	5 cut(s)	72, 114, 168, 272, 295
FatI	CATG	1 cut(s)	270
Fnu4HI	GCNGC	2 cut(s)	18, 177
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	2 cut(s)	18, 177
GluI	GCNGC	2 cut(s)	18, 177
GsaI	CCCAGC	1 cut(s)	348
Hin1II	CATG	1 cut(s)	274
HphI	GGTGA	1 cut(s)	289
Hpy188I	TCNGA	1 cut(s)	146
Hpy188III	TCNNGA	2 cut(s)	331, 354
HpyAV	CCTTC	2 cut(s)	80, 304
HpyCH4V	TGCA	2 cut(s)	17, 378
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
Hsp92II	CATG	1 cut(s)	274
Kzo9I	GATC	2 cut(s)	125, 382
LmnI	GCTCC	1 cut(s)	353
LpnPI	CCDG	6 cut(s)	67, 93, 237, 258, 272, 358
Lsp1109I	GCAGC	2 cut(s)	29, 163
MalI	GATC	2 cut(s)	127, 384
MboI	GATC	2 cut(s)	125, 382
MboII	GAAGA	1 cut(s)	159
MluCI	AATT	2 cut(s)	206, 357
MnlI	CCTC	2 cut(s)	91, 361
MseI	TTAA	1 cut(s)	201
MslI	CAYNNNNRTG	1 cut(s)	275
MspA1I	CMGCKG	1 cut(s)	64
MwoI	GCNNNNNNNGC	1 cut(s)	176
NdeII	GATC	2 cut(s)	125, 382
NlaIII	CATG	1 cut(s)	274
PkrI	GCNGC	2 cut(s)	19, 178
PspFI	CCCAGC	1 cut(s)	344
PvuII	CAGCTG	1 cut(s)	64
RsaI	GTAC	2 cut(s)	36, 68
RsaNI	GTAC	2 cut(s)	35, 67
RseI	CAYNNNNRTG	1 cut(s)	275
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	2 cut(s)	18, 177
Sau3AI	GATC	2 cut(s)	125, 382
SetI	ASST	5 cut(s)	66, 157, 198, 315, 350
SmiMI	CAYNNNNRTG	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	352
SmoI	CTYRAG	1 cut(s)	352
Sse9I	AATT	2 cut(s)	206, 357
SspI	AATATT	1 cut(s)	320
StyI	CCWWGG	2 cut(s)	171, 299
TasI	AATT	2 cut(s)	206, 357
TatI	WGTACW	1 cut(s)	66
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TseI	GCWGC	2 cut(s)	17, 176
XapI	RAATTY	2 cut(s)	206, 357
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.