Rmu_ssc0000116.1_g000058

Belongs to the Frigida family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000116.1
OG0023019
Physical Location & Seq
Forward (+)
290545 .. 292159
1615 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 429 bp
atgacggcagcactatccagattcagaccaattcagtggggagaactacgacggtgccgacgacttctccgatttcgaggagggcgatcaggaggcatacaagaagccgaagattcagaccaattcaatggggagaactacgacgatgccgacgacttctccgatttcgaggagggcgatcaggaggcatacaagaagccgaaggttgacgagaaggacgctttgaaaatgaactcactgtacttgaaggtggatttggggaggttatggaggtttgtgactgggaggaataataagttggaggctctgagggagcaaatctctttggctttgactgagtgtgtgtgtggatccgggaagtttgttctggaggcgatctcggaggtgtttcaggtggacaagaggtcgaataagatcgcagaaaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

142

Amino Acids

16.33

Weight (kDa)

5.69

Isoelectric Point (pI)

42.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 75 - 137 1.9e-06 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0023019)

Species Orthologous Gene IDs
rosa_multiflora Rmu_ssc0000116.1_g000058
rosa_samantha Rh1BG370000 Rh1CG382900 Rh1DG399800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 54
AclWI GGATC 2 cut(s) 345, 358
AfaI GTAC 1 cut(s) 242
AgsI TTSAA 3 cut(s) 127, 226, 247
AhdI GACNNNNNGTC 1 cut(s) 403
AjuI GAANNNNNNNTTGG 4 cut(s) 239, 271, 281, 313
AlwI GGATC 2 cut(s) 345, 358
ApeKI GCWGC 1 cut(s) 8
AsuC2I CCSGG 1 cut(s) 355
BamHI GGATCC 1 cut(s) 350
BanI GGYRCC 1 cut(s) 54
BbvI GCAGC 1 cut(s) 20
BceAI ACGGC 1 cut(s) 21
BcnI CCSGG 1 cut(s) 355
BisI GCNGC 1 cut(s) 9
BlsI GCNGC 1 cut(s) 10
Bme1390I CCNGG 1 cut(s) 355
BmeRI GACNNNNNGTC 1 cut(s) 403
BmiI GGNNCC 2 cut(s) 56, 352
BmrFI CCNGG 1 cut(s) 355
BmrI ACTGGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 136
BmuI ACTGGG 1 cut(s) 291
BplI GAGNNNNNCTC 4 cut(s) 305, 337, 362, 394
BpmI CTGGAG 1 cut(s) 389
BpuMI CCSGG 1 cut(s) 355
BsaXI ACNNNNNCTCC 4 cut(s) 51, 81, 143, 173
Bse1I ACTGG 1 cut(s) 286
BseMII CTCAG 2 cut(s) 299, 327
BseNI ACTGG 1 cut(s) 286
BseRI GAGGAG 2 cut(s) 93, 185
BseXI GCAGC 1 cut(s) 20
BshNI GGYRCC 1 cut(s) 54
BsiSI CCGG 1 cut(s) 354
Bsp143I GATC 5 cut(s) 86, 178, 350, 375, 414
BspCNI CTCAG 2 cut(s) 300, 328
BspLI GGNNCC 2 cut(s) 56, 352
BspPI GGATC 2 cut(s) 345, 358
BspT107I GGYRCC 1 cut(s) 54
BsrI ACTGG 1 cut(s) 286
BssMI GATC 5 cut(s) 86, 178, 350, 375, 414
Bst4CI ACNGT 2 cut(s) 54, 240
BstDEI CTNAG 2 cut(s) 308, 336
BstKTI GATC 5 cut(s) 89, 181, 353, 378, 417
BstMBI GATC 5 cut(s) 86, 178, 350, 375, 414
BstSCI CCNGG 1 cut(s) 353
BstV1I GCAGC 1 cut(s) 20
BstX2I RGATCY 1 cut(s) 350
BstXI CCANNNNNNTGG 2 cut(s) 36, 128
BstYI RGATCY 1 cut(s) 350
BtsIMutI CAGTG 2 cut(s) 41, 236
CseI GACGC 1 cut(s) 227
Csp6I GTAC 1 cut(s) 241
CviJI RGCY 4 cut(s) 107, 199, 305, 329
CviKI_1 RGCY 4 cut(s) 107, 199, 305, 329
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 2 cut(s) 308, 336
DpnI GATC 5 cut(s) 88, 180, 352, 377, 416
DpnII GATC 5 cut(s) 86, 178, 350, 375, 414
DriI GACNNNNNGTC 1 cut(s) 403
Eam1105I GACNNNNNGTC 1 cut(s) 403
FaiI YATR 3 cut(s) 98, 190, 268
Fnu4HI GCNGC 1 cut(s) 9
Fsp4HI GCNGC 1 cut(s) 9
GluI GCNGC 1 cut(s) 9
GsuI CTGGAG 1 cut(s) 389
HapII CCGG 1 cut(s) 354
HgaI GACGC 1 cut(s) 227
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HinfI GANTC 2 cut(s) 21, 113
HpaII CCGG 1 cut(s) 354
Hpy166II GTNNAC 2 cut(s) 208, 397
Hpy188I TCNGA 6 cut(s) 26, 71, 118, 163, 309, 382
Hpy188III TCNNGA 4 cut(s) 18, 90, 182, 368
Hpy8I GTNNAC 2 cut(s) 208, 397
Hpy99I CGWCG 4 cut(s) 54, 63, 146, 155
HpyAV CCTTC 3 cut(s) 196, 208, 241
HpyCH4III ACNGT 2 cut(s) 54, 240
HpyF3I CTNAG 2 cut(s) 308, 336
Kzo9I GATC 5 cut(s) 86, 178, 350, 375, 414
LmnI GCTCC 1 cut(s) 313
LpnPI CCDG 7 cut(s) 31, 75, 167, 267, 353, 367, 377
Lsp1109I GCAGC 1 cut(s) 20
LweI GCATC 1 cut(s) 136
MaeIII GTNAC 1 cut(s) 277
MalI GATC 5 cut(s) 88, 180, 352, 377, 416
MboI GATC 5 cut(s) 86, 178, 350, 375, 414
MboII GAAGA 1 cut(s) 122
MflI RGATCY 1 cut(s) 350
MluCI AATT 2 cut(s) 30, 122
MmeI TCCRAC 1 cut(s) 279
MspI CCGG 1 cut(s) 354
MspR9I CCNGG 1 cut(s) 355
NciI CCSGG 1 cut(s) 355
NdeII GATC 5 cut(s) 86, 178, 350, 375, 414
NlaIV GGNNCC 2 cut(s) 56, 352
NmuCI GTSAC 1 cut(s) 277
PcsI WCGNNNNNNNCGW 8 cut(s) 55, 58, 67, 82, 147, 150, 159, 174
PfeI GAWTC 2 cut(s) 21, 113
PfoI TCCNGGA 1 cut(s) 353
PkrI GCNGC 1 cut(s) 10
PspN4I GGNNCC 2 cut(s) 56, 352
PsrI GAACNNNNNNTAC 2 cut(s) 224, 256
PsuI RGATCY 1 cut(s) 350
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SatI GCNGC 1 cut(s) 9
Sau3AI GATC 5 cut(s) 86, 178, 350, 375, 414
ScrFI CCNGG 1 cut(s) 355
SetI ASST 7 cut(s) 207, 252, 266, 275, 387, 396, 407
SfaNI GCATC 1 cut(s) 136
Sse9I AATT 2 cut(s) 30, 122
StyD4I CCNGG 1 cut(s) 353
TaaI ACNGT 2 cut(s) 54, 240
TaqI TCGA 3 cut(s) 76, 168, 407
TasI AATT 2 cut(s) 30, 122
TatI WGTACW 1 cut(s) 240
TfiI GAWTC 2 cut(s) 21, 113
TscAI CASTG 2 cut(s) 41, 243
TseFI GTSAC 1 cut(s) 277
TseI GCWGC 1 cut(s) 8
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 1 cut(s) 245
TspRI CASTG 2 cut(s) 41, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.