Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0023019

Physical Location & Seq

Genomic Coordinates Forward (+)

50050620 .. 50051794

Gene Structure 1175 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG370000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGAGAGATGAGGATCCCACTTGGACTGAGATTTTTCGGAGCCTGAGTTTTGCTTTACCTTCCAGCACAGATCACATCGATGGGGTGCACTATCCAGATTCAGACCAATTCAATGGCGAGAACTACGACGATGCCGACGAGTTCTCCGATTTCGAGGAGGGCGATCAGGAGGCATACAAGAAGCCGAAGGTTGACGAGAAGGACGTCGTCTTTTTAAAGGGGGCGAACTTCAGCGAGACGATCAAGAAGAACAGGTTCGTGCTAGTTGAGTTCTACGCGCCAGGCTTTGAAAATGAACTCACTGTACTTGAAGGTGGATTTGGGAAGGTTCTGGAGGTTTGTGACTGGGAGGAAGAAGAAGTTGGAGGCTCTGAGGGCGCAAATCTCTTTGGCTTTGACGGAGTGTGCGTGTGGATCCGGGAAGTTTGTTCTGGAGGCGATCTCGGAGGTGTTTCCGGTGGACAAGAGGTCGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0006457 GO:0006950 GO:0006979 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0031090 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0098588 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

158

Amino Acids

17.59

Weight (kDa)

4.08

Isoelectric Point (pI)

39.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023019)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_ssc0000116.1_g000058
rosa_samantha	Rh1BG370000 Rh1CG382900 Rh1DG399800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	207
AccII	CGCG	1 cut(s)	278
AclWI	GGATC	4 cut(s)	8, 21, 409, 422
AcuI	CTGAAG	1 cut(s)	214
AcyI	GRCGYC	1 cut(s)	204
AfaI	GTAC	1 cut(s)	306
AgsI	TTSAA	3 cut(s)	112, 290, 311
AhdI	GACNNNNNGTC	1 cut(s)	467
AjnI	CCWGG	1 cut(s)	280
AjuI	GAANNNNNNNTTGG	4 cut(s)	303, 335, 345, 377
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	1 cut(s)	230
Alw44I	GTGCAC	1 cut(s)	86
AlwI	GGATC	4 cut(s)	8, 21, 409, 422
ApaLI	GTGCAC	1 cut(s)	86
Asp700I	GAANNNNTTC	1 cut(s)	254
AspLEI	GCGC	2 cut(s)	280, 380
AsuC2I	CCSGG	1 cut(s)	419
BaeGI	GKGCMC	1 cut(s)	90
BamHI	GGATCC	2 cut(s)	13, 414
Bbv12I	GWGCWC	1 cut(s)	90
BccI	CCATC	1 cut(s)	74
BciT130I	CCWGG	1 cut(s)	282
BcnI	CCSGG	1 cut(s)	419
BcoDI	GTCTC	1 cut(s)	230
BfaI	CTAG	1 cut(s)	263
Bme1390I	CCNGG	2 cut(s)	282, 419
BmeRI	GACNNNNNGTC	1 cut(s)	467
BmiI	GGNNCC	3 cut(s)	15, 41, 416
BmrFI	CCNGG	2 cut(s)	282, 419
BmrI	ACTGGG	1 cut(s)	355
BmsI	GCATC	1 cut(s)	121
BmuI	ACTGGG	1 cut(s)	355
BplI	GAGNNNNNCTC	2 cut(s)	426, 458
BpmI	CTGGAG	2 cut(s)	353, 453
BpuMI	CCSGG	1 cut(s)	419
Bsa29I	ATCGAT	1 cut(s)	78
BsaBI	GATNNNNATC	1 cut(s)	12
BsaHI	GRCGYC	1 cut(s)	204
BsaWI	WCCGGW	1 cut(s)	455
BsaXI	ACNNNNNCTCC	6 cut(s)	31, 61, 128, 158, 393, 423
Bse1I	ACTGG	1 cut(s)	350
Bse8I	GATNNNNATC	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	282
BseCI	ATCGAT	1 cut(s)	78
BseJI	GATNNNNATC	1 cut(s)	12
BseMII	CTCAG	3 cut(s)	18, 35, 363
BseNI	ACTGG	1 cut(s)	350
BseRI	GAGGAG	1 cut(s)	170
BseSI	GKGCMC	1 cut(s)	90
Bsh1236I	CGCG	1 cut(s)	278
BshVI	ATCGAT	1 cut(s)	78
BsiHKAI	GWGCWC	1 cut(s)	90
BsiSI	CCGG	2 cut(s)	418, 456
BsmAI	GTCTC	1 cut(s)	230
BsmBI	CGTCTC	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	6 cut(s)	13, 70, 163, 240, 414, 439
BspCNI	CTCAG	3 cut(s)	19, 36, 364
BspDI	ATCGAT	1 cut(s)	78
BspFNI	CGCG	1 cut(s)	278
BspLI	GGNNCC	3 cut(s)	15, 41, 416
BspPI	GGATC	4 cut(s)	8, 21, 409, 422
BsrI	ACTGG	1 cut(s)	350
BssMI	GATC	6 cut(s)	13, 70, 163, 240, 414, 439
BssNI	GRCGYC	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	304
BstACI	GRCGYC	1 cut(s)	204
BstDEI	CTNAG	3 cut(s)	27, 44, 372
BstFNI	CGCG	1 cut(s)	278
BstHHI	GCGC	2 cut(s)	280, 380
BstKTI	GATC	6 cut(s)	16, 73, 166, 243, 417, 442
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	6 cut(s)	13, 70, 163, 240, 414, 439
BstMWI	GCNNNNNNNGC	1 cut(s)	375
BstNI	CCWGG	1 cut(s)	282
BstSCI	CCNGG	2 cut(s)	280, 417
BstSLI	GKGCMC	1 cut(s)	90
BstUI	CGCG	1 cut(s)	278
BstX2I	RGATCY	2 cut(s)	13, 414
BstXI	CCANNNNNNTGG	1 cut(s)	113
BstYI	RGATCY	2 cut(s)	13, 414
Bsu15I	ATCGAT	1 cut(s)	78
BsuTUI	ATCGAT	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	300
CfoI	GCGC	2 cut(s)	280, 380
ClaI	ATCGAT	1 cut(s)	78
Csp6I	GTAC	1 cut(s)	305
CviJI	RGCY	5 cut(s)	42, 184, 285, 369, 393
CviKI_1	RGCY	5 cut(s)	42, 184, 285, 369, 393
CviQI	GTAC	1 cut(s)	305
DdeI	CTNAG	3 cut(s)	27, 44, 372
DpnI	GATC	6 cut(s)	15, 72, 165, 242, 416, 441
DpnII	GATC	6 cut(s)	13, 70, 163, 240, 414, 439
DraI	TTTAAA	1 cut(s)	216
DriI	GACNNNNNGTC	1 cut(s)	467
Eam1105I	GACNNNNNGTC	1 cut(s)	467
Eco57I	CTGAAG	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	280
Esp3I	CGTCTC	1 cut(s)	230
FaiI	YATR	1 cut(s)	175
FspBI	CTAG	1 cut(s)	263
GlaI	GCGC	2 cut(s)	279, 379
GsuI	CTGGAG	2 cut(s)	353, 453
HapII	CCGG	2 cut(s)	418, 456
HhaI	GCGC	2 cut(s)	280, 380
Hin1I	GRCGYC	1 cut(s)	204
Hin6I	GCGC	2 cut(s)	278, 378
HinP1I	GCGC	2 cut(s)	278, 378
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	1 cut(s)	98
HpaII	CCGG	2 cut(s)	418, 456
Hpy166II	GTNNAC	3 cut(s)	88, 193, 461
Hpy188I	TCNGA	5 cut(s)	39, 103, 148, 373, 446
Hpy188III	TCNNGA	5 cut(s)	95, 167, 244, 332, 432
Hpy8I	GTNNAC	3 cut(s)	88, 193, 461
Hpy99I	CGWCG	3 cut(s)	131, 140, 209
HpyAV	CCTTC	5 cut(s)	69, 181, 193, 305, 319
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	1 cut(s)	88
HpyF10VI	GCNNNNNNNGC	1 cut(s)	375
HpyF3I	CTNAG	3 cut(s)	27, 44, 372
HpySE526I	ACGT	1 cut(s)	204
Hsp92I	GRCGYC	1 cut(s)	204
HspAI	GCGC	2 cut(s)	278, 378
Kzo9I	GATC	6 cut(s)	13, 70, 163, 240, 414, 439
LmnI	GCTCC	1 cut(s)	39
LweI	GCATC	1 cut(s)	121
MaeI	CTAG	1 cut(s)	263
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	1 cut(s)	341
MalI	GATC	6 cut(s)	15, 72, 165, 242, 416, 441
MboI	GATC	6 cut(s)	13, 70, 163, 240, 414, 439
MboII	GAAGA	3 cut(s)	259, 365, 368
MflI	RGATCY	2 cut(s)	13, 414
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	1 cut(s)	107
MmeI	TCCRAC	1 cut(s)	343
MroXI	GAANNNNTTC	1 cut(s)	254
MseI	TTAA	1 cut(s)	215
MslI	CAYNNNNRTG	1 cut(s)	78
MspI	CCGG	2 cut(s)	418, 456
MspR9I	CCNGG	2 cut(s)	282, 419
MvaI	CCWGG	1 cut(s)	282
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	1 cut(s)	375
NciI	CCSGG	1 cut(s)	419
NdeII	GATC	6 cut(s)	13, 70, 163, 240, 414, 439
NlaIV	GGNNCC	3 cut(s)	15, 41, 416
NmuCI	GTSAC	1 cut(s)	341
PcsI	WCGNNNNNNNCGW	6 cut(s)	132, 135, 144, 159, 201, 405
PdmI	GAANNNNTTC	1 cut(s)	254
PfeI	GAWTC	1 cut(s)	98
PflFI	GACNNNGTC	1 cut(s)	206
PfoI	TCCNGGA	1 cut(s)	417
Psp6I	CCWGG	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	3 cut(s)	15, 41, 416
PsrI	GAACNNNNNNTAC	2 cut(s)	288, 320
PsuI	RGATCY	2 cut(s)	13, 414
PsyI	GACNNNGTC	1 cut(s)	206
RsaI	GTAC	1 cut(s)	306
RsaNI	GTAC	1 cut(s)	305
RseI	CAYNNNNRTG	1 cut(s)	78
SaqAI	TTAA	1 cut(s)	215
Sau3AI	GATC	6 cut(s)	13, 70, 163, 240, 414, 439
ScrFI	CCNGG	2 cut(s)	282, 419
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	9 cut(s)	61, 192, 207, 257, 316, 330, 339, 451, 471
SfaNI	GCATC	1 cut(s)	121
SmiMI	CAYNNNNRTG	1 cut(s)	78
Sse9I	AATT	1 cut(s)	107
SspMI	CTAG	1 cut(s)	263
StyD4I	CCNGG	2 cut(s)	280, 417
TaaI	ACNGT	1 cut(s)	304
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	3 cut(s)	78, 153, 471
TasI	AATT	1 cut(s)	107
TatI	WGTACW	1 cut(s)	304
TfiI	GAWTC	1 cut(s)	98
Tru1I	TTAA	1 cut(s)	215
Tru9I	TTAA	1 cut(s)	215
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	1 cut(s)	341
Tsp45I	GTSAC	1 cut(s)	341
TspDTI	ATGAA	1 cut(s)	309
TspGWI	ACGGA	1 cut(s)	414
TspRI	CASTG	1 cut(s)	307
Tth111I	GACNNNGTC	1 cut(s)	206
VneI	GTGCAC	1 cut(s)	86
XmnI	GAANNNNTTC	1 cut(s)	254
XspI	CTAG	1 cut(s)	263
ZraI	GACGTC	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.