Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0023019

Physical Location & Seq

Genomic Coordinates Forward (+)

61958551 .. 61959767

Gene Structure 1217 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG399800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGACCCCGAAACTAATTCATGCAGTAGTACTGTGCAAGAGATGAGAGATGAGGATCCCACTTGGACTGAGATTTTTCGGAGCCTGAGTTTTGCTTTACCTTCCAGCACAGATCACATCGATGGGGTGCACTATCCAGATTCAGACCAATTCAATGGCGAGAACTACGACGATGCCGACGAGTTCTCCGATTTCGAGGAGGGCGATCAGGAGGCATACAAGAAGCCGAAGGTTGACGAGAAGGACGTCGTCTTTTTAAAGGGGGCGAACTTCAGCGAGACGATCAAGAAGAACAGGTTCGTGCTAGTTGAGTTCTACGCGCCAGGCTTTGAAAATGAACTCACTGTACTTGAAGGTGGATTTGGGAAGGTTCTGGAGGTTTGTGACTGGGAGGAAGAAGAAGTTGGAGGCTCTGAGGGCGCAAATCTCTTTGGCTTTGACGGAGTGTGCGTGTGGATCCGGGAAGTTTGTTCTGGAGGCGATCTCGGAGGTGTTTCCGGTGGACAAGAGGTCGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0006457 GO:0006950 GO:0006979 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0031090 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0098588 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

172

Amino Acids

19.1

Weight (kDa)

4.05

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023019)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_ssc0000116.1_g000058
rosa_samantha	Rh1BG370000 Rh1CG382900 Rh1DG399800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	249
AccII	CGCG	1 cut(s)	320
AclWI	GGATC	4 cut(s)	50, 63, 451, 464
AcuI	CTGAAG	1 cut(s)	256
AcyI	GRCGYC	1 cut(s)	246
AfaI	GTAC	2 cut(s)	31, 348
AgsI	TTSAA	3 cut(s)	154, 332, 353
AhdI	GACNNNNNGTC	1 cut(s)	509
AjnI	CCWGG	1 cut(s)	322
AjuI	GAANNNNNNNTTGG	4 cut(s)	345, 377, 387, 419
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	1 cut(s)	272
Alw44I	GTGCAC	1 cut(s)	128
AlwI	GGATC	4 cut(s)	50, 63, 451, 464
ApaLI	GTGCAC	1 cut(s)	128
Asp700I	GAANNNNTTC	1 cut(s)	296
AspLEI	GCGC	2 cut(s)	322, 422
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	461
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	132
BamHI	GGATCC	2 cut(s)	55, 456
Bbv12I	GWGCWC	1 cut(s)	132
BccI	CCATC	1 cut(s)	116
BciT130I	CCWGG	1 cut(s)	324
BcnI	CCSGG	1 cut(s)	461
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	1 cut(s)	305
BmcAI	AGTACT	1 cut(s)	31
Bme1390I	CCNGG	2 cut(s)	324, 461
Bme18I	GGWCC	1 cut(s)	4
BmeRI	GACNNNNNGTC	1 cut(s)	509
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	4 cut(s)	6, 57, 83, 458
BmrFI	CCNGG	2 cut(s)	324, 461
BmrI	ACTGGG	1 cut(s)	397
BmsI	GCATC	1 cut(s)	163
BmuI	ACTGGG	1 cut(s)	397
BplI	GAGNNNNNCTC	2 cut(s)	468, 500
BpmI	CTGGAG	2 cut(s)	395, 495
BpuMI	CCSGG	1 cut(s)	461
Bsa29I	ATCGAT	1 cut(s)	120
BsaBI	GATNNNNATC	1 cut(s)	54
BsaHI	GRCGYC	1 cut(s)	246
BsaWI	WCCGGW	1 cut(s)	497
BsaXI	ACNNNNNCTCC	6 cut(s)	73, 103, 170, 200, 435, 465
Bse1I	ACTGG	1 cut(s)	392
Bse8I	GATNNNNATC	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	324
BseCI	ATCGAT	1 cut(s)	120
BseJI	GATNNNNATC	1 cut(s)	54
BseMII	CTCAG	3 cut(s)	60, 77, 405
BseNI	ACTGG	1 cut(s)	392
BseRI	GAGGAG	1 cut(s)	212
BseSI	GKGCMC	1 cut(s)	132
Bsh1236I	CGCG	1 cut(s)	320
BshVI	ATCGAT	1 cut(s)	120
BsiHKAI	GWGCWC	1 cut(s)	132
BsiSI	CCGG	2 cut(s)	460, 498
BsmAI	GTCTC	1 cut(s)	272
BsmBI	CGTCTC	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	6 cut(s)	55, 112, 205, 282, 456, 481
BspCNI	CTCAG	3 cut(s)	61, 78, 406
BspDI	ATCGAT	1 cut(s)	120
BspFNI	CGCG	1 cut(s)	320
BspLI	GGNNCC	4 cut(s)	6, 57, 83, 458
BspPI	GGATC	4 cut(s)	50, 63, 451, 464
BsrI	ACTGG	1 cut(s)	392
BssMI	GATC	6 cut(s)	55, 112, 205, 282, 456, 481
BssNI	GRCGYC	1 cut(s)	246
Bst2UI	CCWGG	1 cut(s)	324
Bst4CI	ACNGT	2 cut(s)	34, 346
BstACI	GRCGYC	1 cut(s)	246
BstDEI	CTNAG	3 cut(s)	69, 86, 414
BstFNI	CGCG	1 cut(s)	320
BstHHI	GCGC	2 cut(s)	322, 422
BstKTI	GATC	6 cut(s)	58, 115, 208, 285, 459, 484
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	6 cut(s)	55, 112, 205, 282, 456, 481
BstMWI	GCNNNNNNNGC	1 cut(s)	417
BstNI	CCWGG	1 cut(s)	324
BstSCI	CCNGG	2 cut(s)	322, 459
BstSLI	GKGCMC	1 cut(s)	132
BstUI	CGCG	1 cut(s)	320
BstX2I	RGATCY	2 cut(s)	55, 456
BstXI	CCANNNNNNTGG	1 cut(s)	155
BstYI	RGATCY	2 cut(s)	55, 456
Bsu15I	ATCGAT	1 cut(s)	120
BsuTUI	ATCGAT	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	342
CfoI	GCGC	2 cut(s)	322, 422
Cfr13I	GGNCC	1 cut(s)	4
ClaI	ATCGAT	1 cut(s)	120
Csp6I	GTAC	2 cut(s)	30, 347
CviAII	CATG	1 cut(s)	21
CviJI	RGCY	5 cut(s)	84, 226, 327, 411, 435
CviKI_1	RGCY	5 cut(s)	84, 226, 327, 411, 435
CviQI	GTAC	2 cut(s)	30, 347
DdeI	CTNAG	3 cut(s)	69, 86, 414
DpnI	GATC	6 cut(s)	57, 114, 207, 284, 458, 483
DpnII	GATC	6 cut(s)	55, 112, 205, 282, 456, 481
DraI	TTTAAA	1 cut(s)	258
DriI	GACNNNNNGTC	1 cut(s)	509
Eam1105I	GACNNNNNGTC	1 cut(s)	509
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	322
Esp3I	CGTCTC	1 cut(s)	272
FaeI	CATG	1 cut(s)	24
FaiI	YATR	2 cut(s)	22, 217
FatI	CATG	1 cut(s)	20
FspBI	CTAG	1 cut(s)	305
GlaI	GCGC	2 cut(s)	321, 421
GsuI	CTGGAG	2 cut(s)	395, 495
HapII	CCGG	2 cut(s)	460, 498
HhaI	GCGC	2 cut(s)	322, 422
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	1 cut(s)	24
Hin6I	GCGC	2 cut(s)	320, 420
HinP1I	GCGC	2 cut(s)	320, 420
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	1 cut(s)	140
HpaII	CCGG	2 cut(s)	460, 498
Hpy166II	GTNNAC	3 cut(s)	130, 235, 503
Hpy188I	TCNGA	5 cut(s)	81, 145, 190, 415, 488
Hpy188III	TCNNGA	5 cut(s)	137, 209, 286, 374, 474
Hpy8I	GTNNAC	3 cut(s)	130, 235, 503
Hpy99I	CGWCG	3 cut(s)	173, 182, 251
HpyAV	CCTTC	5 cut(s)	111, 223, 235, 347, 361
HpyCH4III	ACNGT	2 cut(s)	34, 346
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	3 cut(s)	24, 37, 130
HpyF10VI	GCNNNNNNNGC	1 cut(s)	417
HpyF3I	CTNAG	3 cut(s)	69, 86, 414
HpySE526I	ACGT	1 cut(s)	246
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	1 cut(s)	24
HspAI	GCGC	2 cut(s)	320, 420
Kzo9I	GATC	6 cut(s)	55, 112, 205, 282, 456, 481
LmnI	GCTCC	1 cut(s)	81
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	305
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	383
MalI	GATC	6 cut(s)	57, 114, 207, 284, 458, 483
MboI	GATC	6 cut(s)	55, 112, 205, 282, 456, 481
MboII	GAAGA	3 cut(s)	301, 407, 410
MflI	RGATCY	2 cut(s)	55, 456
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	2 cut(s)	16, 149
MmeI	TCCRAC	1 cut(s)	385
MroXI	GAANNNNTTC	1 cut(s)	296
MseI	TTAA	1 cut(s)	257
MslI	CAYNNNNRTG	1 cut(s)	120
MspI	CCGG	2 cut(s)	460, 498
MspR9I	CCNGG	2 cut(s)	324, 461
MvaI	CCWGG	1 cut(s)	324
MvnI	CGCG	1 cut(s)	320
MwoI	GCNNNNNNNGC	1 cut(s)	417
NciI	CCSGG	1 cut(s)	461
NdeII	GATC	6 cut(s)	55, 112, 205, 282, 456, 481
NlaIII	CATG	1 cut(s)	24
NlaIV	GGNNCC	4 cut(s)	6, 57, 83, 458
NmuCI	GTSAC	1 cut(s)	383
PcsI	WCGNNNNNNNCGW	6 cut(s)	174, 177, 186, 201, 243, 447
PdmI	GAANNNNTTC	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	140
PflFI	GACNNNGTC	1 cut(s)	248
PfoI	TCCNGGA	1 cut(s)	459
Psp6I	CCWGG	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	322
PspN4I	GGNNCC	4 cut(s)	6, 57, 83, 458
PspPI	GGNCC	1 cut(s)	4
PsrI	GAACNNNNNNTAC	2 cut(s)	330, 362
PsuI	RGATCY	2 cut(s)	55, 456
PsyI	GACNNNGTC	1 cut(s)	248
RsaI	GTAC	2 cut(s)	31, 348
RsaNI	GTAC	2 cut(s)	30, 347
RseI	CAYNNNNRTG	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	257
Sau3AI	GATC	6 cut(s)	55, 112, 205, 282, 456, 481
Sau96I	GGNCC	1 cut(s)	4
ScaI	AGTACT	1 cut(s)	31
ScrFI	CCNGG	2 cut(s)	324, 461
SduI	GDGCHC	1 cut(s)	132
SetI	ASST	9 cut(s)	103, 234, 249, 299, 358, 372, 381, 493, 513
SfaNI	GCATC	1 cut(s)	163
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	120
Sse9I	AATT	2 cut(s)	16, 149
SspMI	CTAG	1 cut(s)	305
StyD4I	CCNGG	2 cut(s)	322, 459
TaaI	ACNGT	2 cut(s)	34, 346
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	3 cut(s)	120, 195, 513
TasI	AATT	2 cut(s)	16, 149
TatI	WGTACW	2 cut(s)	29, 346
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	1 cut(s)	257
Tru9I	TTAA	1 cut(s)	257
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	1 cut(s)	383
Tsp45I	GTSAC	1 cut(s)	383
TspDTI	ATGAA	2 cut(s)	9, 351
TspGWI	ACGGA	1 cut(s)	456
TspRI	CASTG	1 cut(s)	349
Tth111I	GACNNNGTC	1 cut(s)	248
VneI	GTGCAC	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	4
XmnI	GAANNNNTTC	1 cut(s)	296
XspI	CTAG	1 cut(s)	305
ZraI	GACGTC	1 cut(s)	247
ZrmI	AGTACT	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.