Rmu_ssc0000150.1_g000016

Belongs to the ATG8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000150.1
OG0015800
Physical Location & Seq
Reverse (-)
80830 .. 85810
4981 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 786 bp
atgccggaatccggacaccagtccggtagccggattccagattccggtgatcgatcgccggattccggtcattggtggccaaatccaagtgaccggtcgacgttttcaggtcaccagagtcggtgcccggccactggttaccggaggcaggcaagcggaccaaacatcaccgcccgaaagaccaaaacaaacccactatcatacataagcaacctcatcgatcatttcatcctccaagccaagaacagacagattgtcagtgacttctactcttctccaatctttatccttgattcaagaaacatgacgaaaagcaccttcaagcaagcacacgagtttgagaagaggtgtgctgaagcctcgaggattagagagaagtacccagatagaattccagtgattgtggagaaggcagagagaagtgatattcccaacattgacaagaaaaaatacctagtaccagctgatttgactgttggtcaatttgtctatgtcatccgcaagagaatcaaactgagtgcagaaaaggccatcttcatatttgtggacaatgtcctcccacctacaggagcagtaatgtctactatctatgatgaaaagaaggatggtgatggatttctatacgtttcatacagtgaactatcctgtccccgaactttggatgcaactcccaagacttgggactcggactttgaagttcgaggctggatcattggtgcaagtgtacatgtgtacgtagctccagtgctccgcattctggaattcagaggatggagttctctgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04068 ko04136 ko04137 ko04138 ko04139 ko04140 ko04212 ko04371 ko04621 ko04727 ko05167 map04068 map04136 map04137 map04138 map04139 map04140 map04212 map04371 map04621 map04727 map05167
Pfam Domains
Protein Families
Atg8

Protein Analysis

261

Amino Acids

29.61

Weight (kDa)

9.25

Isoelectric Point (pI)

51.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATG8 PF02991 115 - 213 8.1e-46 Autophagy protein Atg8 ubiquitin like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015800)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45170 AT2G45170 AT3G60640
fragaria_vesca FvH4_7g11130
malus_domestica MD02G1210100.v1.1 MD07G1116100.v1.1
rosa_chinensis RchiOBHm_Chr1g0349151
rosa_laevigata RLG00000028600
rosa_multiflora Rmu_ssc0000150.1_g000016
rosa_roxburghii Rroxscaffold_4G00306060
rosa_rugosa Rorug01G0200800 Rorug01G0200900 Rorug01G0201000
rosa_samantha Rh1AG218500
rosa_wichuraiana Rw1G018560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 361
AccB1I GGYRCC 1 cut(s) 123
AccB7I CCANNNNNTGG 1 cut(s) 678
AccI GTMKAC 2 cut(s) 98, 581
AccIII TCCGGA 1 cut(s) 11
AciI CCGC 4 cut(s) 156, 171, 499, 751
AclWI GGATC 1 cut(s) 716
AcoI YGGCCR 2 cut(s) 77, 129
AcsI RAATTY 2 cut(s) 390, 761
AcuI CTGAAG 1 cut(s) 375
AfaI GTAC 4 cut(s) 380, 459, 726, 734
AflIII ACRYGT 1 cut(s) 727
AgeI ACCGGT 1 cut(s) 93
AgsI TTSAA 3 cut(s) 297, 322, 695
AhdI GACNNNNNGTC 2 cut(s) 254, 477
AluBI AGCT 2 cut(s) 464, 740
AluI AGCT 2 cut(s) 464, 740
Alw21I GWGCWC 1 cut(s) 750
AlwI GGATC 1 cut(s) 716
Ama87I CYCGRG 1 cut(s) 361
Aor13HI TCCGGA 1 cut(s) 11
AoxI GGCC 3 cut(s) 77, 129, 528
ApoI RAATTY 2 cut(s) 390, 761
ArsI GACNNNNNNTTYG 2 cut(s) 674, 706
AsiGI ACCGGT 1 cut(s) 93
AspS9I GGNCC 1 cut(s) 158
AsuC2I CCSGG 1 cut(s) 128
AsuHPI GGTGA 4 cut(s) 59, 104, 160, 620
AvaI CYCGRG 1 cut(s) 361
AvaII GGWCC 1 cut(s) 158
BaeGI GKGCMC 1 cut(s) 128
BalI TGGCCA 1 cut(s) 79
BanI GGYRCC 1 cut(s) 123
BauI CACGAG 1 cut(s) 332
Bbv12I GWGCWC 1 cut(s) 750
BccI CCATC 4 cut(s) 539, 599, 605, 765
BcgI CGANNNNNNTGC 2 cut(s) 199, 233
BcnI CCSGG 1 cut(s) 128
BfaI CTAG 1 cut(s) 455
BfmI CTRYAG 2 cut(s) 564, 782
Bme1390I CCNGG 1 cut(s) 128
Bme18I GGWCC 1 cut(s) 158
BmeRI GACNNNNNGTC 2 cut(s) 254, 477
BmeT110I CYCGRG 1 cut(s) 361
BmgT120I GGNCC 1 cut(s) 158
BmiI GGNNCC 1 cut(s) 125
BmrFI CCNGG 1 cut(s) 128
BmsI GCATC 1 cut(s) 652
BoxI GACNNNNGTC 1 cut(s) 19
BpmI CTGGAG 1 cut(s) 726
BpuMI CCSGG 1 cut(s) 128
Bsa29I ATCGAT 2 cut(s) 52, 219
BsaAI YACGTR 1 cut(s) 736
BsaWI WCCGGW 6 cut(s) 11, 23, 44, 65, 93, 141
Bse118I RCCGGY 1 cut(s) 93
Bse1I ACTGG 4 cut(s) 19, 139, 395, 743
BseAI TCCGGA 1 cut(s) 11
BseCI ATCGAT 2 cut(s) 52, 219
BseGI GGATG 5 cut(s) 228, 495, 610, 667, 776
BseMII CTCAG 1 cut(s) 506
BseNI ACTGG 4 cut(s) 19, 139, 395, 743
BseSI GKGCMC 1 cut(s) 128
BsgI GTGCAG 1 cut(s) 540
Bsh1285I CGRYCG 2 cut(s) 56, 98
BshFI GGCC 3 cut(s) 79, 131, 530
BshNI GGYRCC 1 cut(s) 123
BshTI ACCGGT 1 cut(s) 93
BshVI ATCGAT 2 cut(s) 52, 219
BsiEI CGRYCG 2 cut(s) 56, 98
BsiHKAI GWGCWC 1 cut(s) 750
BsiHKCI CYCGRG 1 cut(s) 361
BslFI GGGAC 2 cut(s) 633, 695
BsmFI GGGAC 2 cut(s) 633, 695
BsmI GAATGC 1 cut(s) 753
BsnI GGCC 3 cut(s) 79, 131, 530
BsoBI CYCGRG 1 cut(s) 361
Bsp1286I GDGCHC 2 cut(s) 128, 750
Bsp13I TCCGGA 1 cut(s) 11
Bsp1407I TGTACA 1 cut(s) 724
Bsp143I GATC 4 cut(s) 49, 53, 220, 708
BspACI CCGC 4 cut(s) 156, 171, 499, 751
BspANI GGCC 3 cut(s) 79, 131, 530
BspCNI CTCAG 1 cut(s) 507
BspDI ATCGAT 2 cut(s) 52, 219
BspEI TCCGGA 1 cut(s) 11
BspLI GGNNCC 1 cut(s) 125
BspPI GGATC 1 cut(s) 716
BspT107I GGYRCC 1 cut(s) 123
BsrFI RCCGGY 1 cut(s) 93
BsrGI TGTACA 1 cut(s) 724
BsrI ACTGG 4 cut(s) 19, 139, 395, 743
BssAI RCCGGY 1 cut(s) 93
BssMI GATC 4 cut(s) 49, 53, 220, 708
BssSI CACGAG 1 cut(s) 332
Bst2BI CACGAG 1 cut(s) 332
Bst4CI ACNGT 2 cut(s) 475, 635
Bst6I CTCTTC 2 cut(s) 277, 338
BstAUI TGTACA 1 cut(s) 724
BstBAI YACGTR 1 cut(s) 736
BstC8I GCNNGC 3 cut(s) 150, 154, 327
BstDEI CTNAG 1 cut(s) 515
BstEII GGTNACC 2 cut(s) 110, 137
BstF5I GGATG 5 cut(s) 228, 495, 610, 667, 776
BstKTI GATC 4 cut(s) 52, 56, 223, 711
BstMBI GATC 4 cut(s) 49, 53, 220, 708
BstMCI CGRYCG 2 cut(s) 56, 98
BstMWI GCNNNNNNNGC 1 cut(s) 527
BstNSI RCATGY 1 cut(s) 731
BstPAI GACNNNNGTC 1 cut(s) 19
BstPI GGTNACC 2 cut(s) 110, 137
BstSCI CCNGG 1 cut(s) 126
BstSFI CTRYAG 2 cut(s) 564, 782
BstSLI GKGCMC 1 cut(s) 128
BstSNI TACGTA 1 cut(s) 736
Bsu15I ATCGAT 2 cut(s) 52, 219
BsuRI GGCC 3 cut(s) 79, 131, 530
BsuTUI ATCGAT 2 cut(s) 52, 219
BtsCI GGATG 5 cut(s) 228, 495, 610, 667, 776
BtsIMutI CAGTG 5 cut(s) 132, 265, 402, 640, 750
Cac8I GCNNGC 3 cut(s) 150, 154, 327
Cfr10I RCCGGY 1 cut(s) 93
Cfr13I GGNCC 1 cut(s) 158
ClaI ATCGAT 2 cut(s) 52, 219
Csp6I GTAC 4 cut(s) 379, 458, 725, 733
CspAI ACCGGT 1 cut(s) 93
CviAII CATG 2 cut(s) 304, 728
CviJI RGCY 9 cut(s) 30, 79, 131, 239, 359, 464, 530, 705, 740
CviKI_1 RGCY 9 cut(s) 30, 79, 131, 239, 359, 464, 530, 705, 740
CviQI GTAC 4 cut(s) 379, 458, 725, 733
DdeI CTNAG 1 cut(s) 515
DpnI GATC 4 cut(s) 51, 55, 222, 710
DpnII GATC 4 cut(s) 49, 53, 220, 708
DriI GACNNNNNGTC 2 cut(s) 254, 477
EaeI YGGCCR 2 cut(s) 77, 129
Eam1104I CTCTTC 2 cut(s) 277, 338
Eam1105I GACNNNNNGTC 2 cut(s) 254, 477
EarI CTCTTC 2 cut(s) 277, 338
Eco105I TACGTA 1 cut(s) 736
Eco47I GGWCC 1 cut(s) 158
Eco57I CTGAAG 1 cut(s) 375
Eco88I CYCGRG 1 cut(s) 361
Eco91I GGTNACC 2 cut(s) 110, 137
EcoO65I GGTNACC 2 cut(s) 110, 137
EcoRI GAATTC 2 cut(s) 390, 761
FaeI CATG 2 cut(s) 307, 731
FaiI YATR 9 cut(s) 202, 206, 305, 492, 539, 591, 622, 631, 729
FalI AAGNNNNNCTT 2 cut(s) 518, 550
FaqI GGGAC 2 cut(s) 633, 695
FatI CATG 2 cut(s) 303, 727
FblI GTMKAC 2 cut(s) 98, 581
FokI GGATG 4 cut(s) 215, 482, 617, 674
FspBI CTAG 1 cut(s) 455
GsuI CTGGAG 1 cut(s) 726
HaeIII GGCC 3 cut(s) 79, 131, 530
Hin1II CATG 2 cut(s) 307, 731
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
HinfI GANTC 8 cut(s) 8, 34, 41, 62, 118, 293, 507, 683
HphI GGTGA 4 cut(s) 59, 104, 160, 620
Hpy166II GTNNAC 6 cut(s) 99, 547, 582, 638, 725, 733
Hpy188I TCNGA 2 cut(s) 688, 767
Hpy188III TCNNGA 4 cut(s) 12, 38, 297, 758
Hpy8I GTNNAC 6 cut(s) 99, 547, 582, 638, 725, 733
Hpy99I CGWCG 1 cut(s) 103
HpyAV CCTTC 3 cut(s) 328, 403, 595
HpyCH4III ACNGT 2 cut(s) 475, 635
HpyCH4IV ACGT 3 cut(s) 101, 624, 735
HpyCH4V TGCA 3 cut(s) 521, 665, 719
HpyF10VI GCNNNNNNNGC 1 cut(s) 527
HpyF3I CTNAG 1 cut(s) 515
HpySE526I ACGT 3 cut(s) 101, 624, 735
Hsp92II CATG 2 cut(s) 307, 731
Kpn2I TCCGGA 1 cut(s) 11
Kzo9I GATC 4 cut(s) 49, 53, 220, 708
LmnI GCTCC 3 cut(s) 569, 745, 753
LweI GCATC 1 cut(s) 652
MaeI CTAG 1 cut(s) 455
MaeII ACGT 3 cut(s) 101, 624, 735
MaeIII GTNAC 4 cut(s) 89, 110, 137, 260
MalI GATC 4 cut(s) 51, 55, 222, 710
MboI GATC 4 cut(s) 49, 53, 220, 708
MboII GAAGA 3 cut(s) 264, 355, 526
MhlI GDGCHC 2 cut(s) 128, 750
MlsI TGGCCA 1 cut(s) 79
MluCI AATT 3 cut(s) 390, 482, 761
MluNI TGGCCA 1 cut(s) 79
MlyI GAGTC 2 cut(s) 127, 677
MnlI CCTC 9 cut(s) 138, 224, 242, 339, 357, 370, 566, 695, 761
Mox20I TGGCCA 1 cut(s) 79
MroI TCCGGA 1 cut(s) 11
MscI TGGCCA 1 cut(s) 79
MslI CAYNNNNRTG 1 cut(s) 542
Msp20I TGGCCA 1 cut(s) 79
MspA1I CMGCKG 1 cut(s) 464
MspR9I CCNGG 1 cut(s) 128
Mva1269I GAATGC 1 cut(s) 753
MwoI GCNNNNNNNGC 1 cut(s) 527
NciI CCSGG 1 cut(s) 128
NdeII GATC 4 cut(s) 49, 53, 220, 708
NlaIII CATG 2 cut(s) 307, 731
NlaIV GGNNCC 1 cut(s) 125
NmuCI GTSAC 3 cut(s) 89, 110, 260
NspI RCATGY 1 cut(s) 731
PaeR7I CTCGAG 1 cut(s) 361
PciI ACATGT 1 cut(s) 727
PctI GAATGC 1 cut(s) 753
PfeI GAWTC 6 cut(s) 8, 34, 41, 62, 293, 507
PflFI GACNNNGTC 1 cut(s) 551
PflMI CCANNNNNTGG 1 cut(s) 678
PinAI ACCGGT 1 cut(s) 93
Ple19I CGATCG 1 cut(s) 56
PleI GAGTC 2 cut(s) 126, 677
PpsI GAGTC 2 cut(s) 126, 677
Ppu21I YACGTR 1 cut(s) 736
PscI ACATGT 1 cut(s) 727
PshAI GACNNNNGTC 1 cut(s) 19
PspEI GGTNACC 2 cut(s) 110, 137
PspN4I GGNNCC 1 cut(s) 125
PspPI GGNCC 1 cut(s) 158
PspXI VCTCGAGB 1 cut(s) 361
PsyI GACNNNGTC 1 cut(s) 551
PvuI CGATCG 1 cut(s) 56
PvuII CAGCTG 1 cut(s) 464
RsaI GTAC 4 cut(s) 380, 459, 726, 734
RsaNI GTAC 4 cut(s) 379, 458, 725, 733
RseI CAYNNNNRTG 1 cut(s) 542
SalI GTCGAC 1 cut(s) 97
Sau3AI GATC 4 cut(s) 49, 53, 220, 708
Sau96I GGNCC 1 cut(s) 158
SchI GAGTC 2 cut(s) 127, 677
ScrFI CCNGG 1 cut(s) 128
SduI GDGCHC 2 cut(s) 128, 750
SfaNI GCATC 1 cut(s) 652
SfcI CTRYAG 2 cut(s) 564, 782
Sfr274I CTCGAG 1 cut(s) 361
SinI GGWCC 1 cut(s) 158
SlaI CTCGAG 1 cut(s) 361
SmiMI CAYNNNNRTG 1 cut(s) 542
SmlI CTYRAG 1 cut(s) 361
SmoI CTYRAG 1 cut(s) 361
SnaBI TACGTA 1 cut(s) 736
Sse9I AATT 3 cut(s) 390, 482, 761
SsiI CCGC 4 cut(s) 156, 171, 499, 751
SspMI CTAG 1 cut(s) 455
StyD4I CCNGG 1 cut(s) 126
TaaI ACNGT 2 cut(s) 475, 635
TaiI ACGT 3 cut(s) 104, 627, 738
TaqI TCGA 5 cut(s) 52, 98, 219, 362, 700
TasI AATT 3 cut(s) 390, 482, 761
TatI WGTACW 1 cut(s) 724
TfiI GAWTC 6 cut(s) 8, 34, 41, 62, 293, 507
TscAI CASTG 5 cut(s) 139, 265, 402, 640, 750
TseFI GTSAC 3 cut(s) 89, 110, 260
Tsp45I GTSAC 3 cut(s) 89, 110, 260
TspDTI ATGAA 4 cut(s) 217, 526, 609, 618
TspRI CASTG 5 cut(s) 139, 265, 402, 640, 750
Tth111I GACNNNGTC 1 cut(s) 551
Van91I CCANNNNNTGG 1 cut(s) 678
VpaK11BI GGWCC 1 cut(s) 158
XapI RAATTY 2 cut(s) 390, 761
XceI RCATGY 1 cut(s) 731
XhoI CTCGAG 1 cut(s) 361
XmiI GTMKAC 2 cut(s) 98, 581
XspI CTAG 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.