Rorug01G0200800

Belongs to the ATG8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0015800
Physical Location & Seq
Forward (+)
28045096 .. 28045662
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0200800.1

Sequence Viewer

Length: 567 bp
ATGCCACCATATATGGGTAATTTGAAAGACCTCCAGATGTTACCAGAGTTTGTGCTAGACAAACACACTGCTGGGGATAATTTGCCGGAGTTAAAGAAGCTTCAAAATTTGCGTGGAAGACTTTGTATTTCAGGGCTTGTGCATAGCAGCGGTTTGGAGGCCTACATTCTGAGGGACAAGAAGTTTCTTAATGAACTAGTTCTGAATTGGGCAGAATGGGATGTAAGTGAAGAAAAAGCAGAGTCTGATAATTTGAATAATTTAGTAGATTTGAATTGGGAAGGAATCATAAGGGAAGAAATAGAAGAGCTCAATGAACAAGTTTTGGATTGGAGAGGAAACAGAACTGAAGAAAGAGAAGTGCTTGAGAAGCTCCAACCTCACCTGAACCTGGAAAGGCTTAGAATTAGAGGTTATGGAGGTAAAATGTTTCCAGGTTGGTCAGAATATTATTCTTCCTCTGCTCTGGTTGATCTTCATCTTGTTAATTGTGAGAATTACCACAATTACCACACCTACCACGCAGTGGCGGACGCAGGAATATATATCACTGGGGGCAGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04068 ko04136 ko04137 ko04138 ko04139 ko04140 ko04212 ko04371 ko04621 ko04727 ko05167 map04068 map04136 map04137 map04138 map04139 map04140 map04212 map04371 map04621 map04727 map05167
Pfam Domains
Protein Families
Atg8

Protein Analysis

188

Amino Acids

21.86

Weight (kDa)

5.09

Isoelectric Point (pI)

43.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_R13L1-DRL21 PF25019 29 - 170 3.4e-19 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015800)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45170 AT2G45170 AT3G60640
fragaria_vesca FvH4_7g11130
malus_domestica MD02G1210100.v1.1 MD07G1116100.v1.1
rosa_chinensis RchiOBHm_Chr1g0349151
rosa_laevigata RLG00000028600
rosa_multiflora Rmu_ssc0000150.1_g000016
rosa_roxburghii Rroxscaffold_4G00306060
rosa_rugosa Rorug01G0200800 Rorug01G0200900 Rorug01G0201000
rosa_samantha Rh1AG218500
rosa_wichuraiana Rw1G018560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 549
AccB7I CCANNNNNTGG 1 cut(s) 526
AciI CCGC 2 cut(s) 150, 530
AcsI RAATTY 1 cut(s) 106
AcuI CTGAAG 1 cut(s) 369
AdeI CACNNNGTG 1 cut(s) 526
AfiI CCNNNNNNNGG 3 cut(s) 14, 391, 526
AgsI TTSAA 4 cut(s) 25, 104, 256, 274
AhlI ACTAGT 1 cut(s) 196
AjnI CCWGG 2 cut(s) 390, 433
AluBI AGCT 3 cut(s) 100, 310, 373
AluI AGCT 3 cut(s) 100, 310, 373
Alw21I GWGCWC 1 cut(s) 312
AlwNI CAGNNNCTG 1 cut(s) 245
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 1 cut(s) 147
ApoI RAATTY 1 cut(s) 106
Asp700I GAANNNNTTC 1 cut(s) 198
AsuHPI GGTGA 1 cut(s) 374
BanII GRGCYC 1 cut(s) 312
BbsI GAAGAC 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 1 cut(s) 159
BciT130I CCWGG 2 cut(s) 392, 435
BcuI ACTAGT 1 cut(s) 196
BfaI CTAG 2 cut(s) 56, 197
BfuAI ACCTGC 1 cut(s) 549
BisI GCNGC 1 cut(s) 148
BlsI GCNGC 1 cut(s) 149
Bme1390I CCNGG 2 cut(s) 392, 435
BmrFI CCNGG 2 cut(s) 392, 435
BmrI ACTGGG 1 cut(s) 561
BmuI ACTGGG 1 cut(s) 561
BpiI GAAGAC 1 cut(s) 124
BpmI CTGGAG 1 cut(s) 17
BpuEI CTTGAG 1 cut(s) 386
BsaBI GATNNNNATC 1 cut(s) 477
Bsc4I CCNNNNNNNGG 3 cut(s) 14, 391, 526
Bse1I ACTGG 1 cut(s) 556
Bse8I GATNNNNATC 1 cut(s) 477
BseBI CCWGG 2 cut(s) 392, 435
BseGI GGATG 1 cut(s) 226
BseJI GATNNNNATC 1 cut(s) 477
BseLI CCNNNNNNNGG 3 cut(s) 14, 391, 526
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 556
BseXI GCAGC 1 cut(s) 159
BseYI CCCAGC 1 cut(s) 71
BshFI GGCC 1 cut(s) 161
BsiHKAI GWGCWC 1 cut(s) 312
BsiSI CCGG 1 cut(s) 86
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 3 cut(s) 14, 391, 526
BsmFI GGGAC 1 cut(s) 188
BsnI GGCC 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 1 cut(s) 472
BspACI CCGC 2 cut(s) 150, 530
BspANI GGCC 1 cut(s) 161
BspCNI CTCAG 1 cut(s) 162
BspMI ACCTGC 1 cut(s) 549
BspQI GCTCTTC 1 cut(s) 300
BsrI ACTGG 1 cut(s) 556
BssMI GATC 1 cut(s) 472
Bst2UI CCWGG 2 cut(s) 392, 435
Bst6I CTCTTC 1 cut(s) 300
BstDEI CTNAG 2 cut(s) 170, 401
BstF5I GGATG 1 cut(s) 226
BstKTI GATC 1 cut(s) 475
BstMBI GATC 1 cut(s) 472
BstMWI GCNNNNNNNGC 1 cut(s) 370
BstNI CCWGG 2 cut(s) 392, 435
BstSCI CCNGG 2 cut(s) 390, 433
BstV1I GCAGC 1 cut(s) 159
BstV2I GAAGAC 1 cut(s) 124
BsuRI GGCC 1 cut(s) 161
BtsCI GGATG 1 cut(s) 226
BtsI GCAGTG 2 cut(s) 66, 531
BtsIMutI CAGTG 3 cut(s) 66, 531, 549
BveI ACCTGC 1 cut(s) 549
CaiI CAGNNNCTG 1 cut(s) 245
CseI GACGC 1 cut(s) 542
CviJI RGCY 6 cut(s) 100, 136, 161, 310, 373, 400
CviKI_1 RGCY 6 cut(s) 100, 136, 161, 310, 373, 400
DdeI CTNAG 2 cut(s) 170, 401
DpnI GATC 1 cut(s) 474
DpnII GATC 1 cut(s) 472
DraIII CACNNNGTG 1 cut(s) 526
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
EciI GGCGGA 1 cut(s) 545
Ecl136II GAGCTC 1 cut(s) 310
Eco147I AGGCCT 1 cut(s) 161
Eco24I GRGCYC 1 cut(s) 312
Eco53kI GAGCTC 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 369
EcoICRI GAGCTC 1 cut(s) 310
EcoRII CCWGG 2 cut(s) 390, 433
EcoT38I GRGCYC 1 cut(s) 312
FaiI YATR 8 cut(s) 10, 12, 14, 144, 290, 417, 544, 546
FaqI GGGAC 1 cut(s) 188
Fnu4HI GCNGC 1 cut(s) 148
FokI GGATG 1 cut(s) 233
FriOI GRGCYC 1 cut(s) 312
Fsp4HI GCNGC 1 cut(s) 148
FspBI CTAG 2 cut(s) 56, 197
GluI GCNGC 1 cut(s) 148
GsaI CCCAGC 1 cut(s) 75
GsuI CTGGAG 1 cut(s) 17
HaeIII GGCC 1 cut(s) 161
HapII CCGG 1 cut(s) 86
HgaI GACGC 1 cut(s) 542
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 2 cut(s) 242, 285
HpaII CCGG 1 cut(s) 86
HphI GGTGA 1 cut(s) 374
Hpy188I TCNGA 4 cut(s) 171, 204, 247, 445
Hpy188III TCNNGA 1 cut(s) 34
HpyAV CCTTC 1 cut(s) 275
HpyCH4V TGCA 1 cut(s) 142
HpyF10VI GCNNNNNNNGC 1 cut(s) 370
HpyF3I CTNAG 2 cut(s) 170, 401
Kzo9I GATC 1 cut(s) 472
LguI GCTCTTC 1 cut(s) 300
LmnI GCTCC 1 cut(s) 378
Lsp1109I GCAGC 1 cut(s) 159
MaeI CTAG 2 cut(s) 56, 197
MaeIII GTNAC 1 cut(s) 39
MalI GATC 1 cut(s) 474
MboI GATC 1 cut(s) 472
MboII GAAGA 7 cut(s) 129, 242, 308, 317, 362, 447, 467
MhlI GDGCHC 1 cut(s) 312
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 1 cut(s) 400
MnlI CCTC 8 cut(s) 41, 151, 165, 329, 390, 404, 413, 469
MroXI GAANNNNTTC 1 cut(s) 198
MseI TTAA 3 cut(s) 92, 189, 486
MspA1I CMGCKG 1 cut(s) 150
MspI CCGG 1 cut(s) 86
MspR9I CCNGG 2 cut(s) 392, 435
MvaI CCWGG 2 cut(s) 392, 435
MwoI GCNNNNNNNGC 1 cut(s) 370
NdeII GATC 1 cut(s) 472
PceI AGGCCT 1 cut(s) 161
PciSI GCTCTTC 1 cut(s) 300
PdmI GAANNNNTTC 1 cut(s) 198
PfeI GAWTC 1 cut(s) 285
PflMI CCANNNNNTGG 1 cut(s) 526
PkrI GCNGC 1 cut(s) 149
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
Psp124BI GAGCTC 1 cut(s) 312
Psp6I CCWGG 2 cut(s) 390, 433
PspFI CCCAGC 1 cut(s) 71
PspGI CCWGG 2 cut(s) 390, 433
PstNI CAGNNNCTG 1 cut(s) 245
SacI GAGCTC 1 cut(s) 312
SapI GCTCTTC 1 cut(s) 300
SaqAI TTAA 3 cut(s) 92, 189, 486
SatI GCNGC 1 cut(s) 148
Sau3AI GATC 1 cut(s) 472
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 2 cut(s) 392, 435
SduI GDGCHC 1 cut(s) 312
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
SpeI ACTAGT 1 cut(s) 196
SseBI AGGCCT 1 cut(s) 161
SsiI CCGC 2 cut(s) 150, 530
SspI AATATT 1 cut(s) 449
SspMI CTAG 2 cut(s) 56, 197
SstI GAGCTC 1 cut(s) 312
StuI AGGCCT 1 cut(s) 161
StyD4I CCNGG 2 cut(s) 390, 433
TfiI GAWTC 1 cut(s) 285
Tru1I TTAA 3 cut(s) 92, 189, 486
Tru9I TTAA 3 cut(s) 92, 189, 486
TscAI CASTG 3 cut(s) 73, 531, 556
TseI GCWGC 1 cut(s) 147
TspDTI ATGAA 3 cut(s) 207, 330, 467
TspRI CASTG 3 cut(s) 73, 531, 556
Van91I CCANNNNNTGG 1 cut(s) 526
XapI RAATTY 1 cut(s) 106
XmnI GAANNNNTTC 1 cut(s) 198
XspI CTAG 2 cut(s) 56, 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.