Rorug01G0200900

Belongs to the ATG8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0015800
Physical Location & Seq
Forward (+)
28046846 .. 28047776
931 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0200900.1

Sequence Viewer

Length: 819 bp
ATGATTTGGAGACTGCCTGCGATGGGATTTGTGCCCAATGTGGTGACTTTTACTACCATTTTGGGTGGTTATGTGTCGCGGCGCGATATGGTTGGTGCCAAGAGGGTGTTTGGTGAGATTTTGGACAGAGGGTGGGTTCCTGATGTGACTACATATACCATATTGATGGATGGGTATGTGAAGCAGGGGAAGCTGGTTGAGGCTATTAAGGTTATGGATGAGATGGAGGATAATGGGATTGGCGCCAATGAGGTGATTGATGTGTTGTGTTGCGAAGGGAAGGTGGAGGATGCTTGTGTACTGTGGAAGAGGCTTTTGAAGAAGAATTGCACGCCGGATAATGCCGTATTGGGCACACTCATATACTGGCTTTGTAAGAAGGGAGAAGTGTGGGAAGCCAGGAAATTGTTTGATCAGTTTGAGATGAGTGAGCCTCCGGACGTCATGACTTACAACGTGCTTATTTCTGGAATGTGTGAAGTGGGGGAGTTGTGTGAGGCAGGGAGGTTGTGGGATGACATGGTGGAGAAAGGATGTTCTCCGAATTCTTTTACATATAATGTATTGATCAAAGGATTCTGTAAGATTGGAAAAGCGAAGGAGGGAATTAGGATTTTGGACGAGATGTTTGAAAAGGGCTGTTTGCCAAACAAGTCTACTTATGCTATGTTGATTGAGGGGCTCTGTGACTCAGGAGAGGAAGCTGAAATCACTAGAGTAATATCTATGGCAATGTCATGTGGAGACATTGACAGTGATTCCTGGGATCTTTTCCTTCAAAGGTTGTTGGTGATTTGGATTCTGGGGAAAGTGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04068 ko04136 ko04137 ko04138 ko04139 ko04140 ko04212 ko04371 ko04621 ko04727 ko05167 map04068 map04136 map04137 map04138 map04139 map04140 map04212 map04371 map04621 map04727 map05167
Pfam Domains
Protein Families
Atg8

Protein Analysis

272

Amino Acids

30.59

Weight (kDa)

4.73

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 12 - 61 2e-13 PPR repeat family
PPR_1 PF12854 44 - 76 2.2e-09 PPR repeat
PPR_2 PF13041 47 - 84 3.5e-10 PPR repeat family
PPR PF01535 51 - 80 1.1e-08 PPR repeat
PPR_1 PF12854 108 - 139 3.8e-06 PPR repeat
PPR_2 PF13041 146 - 195 8.5e-21 PPR repeat family
PPR_1 PF12854 146 - 175 3.7e-08 PPR repeat
PPR_3 PF13812 146 - 193 1e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 177 - 209 5.8e-12 PPR repeat
PPR_2 PF13041 184 - 230 5.1e-15 PPR repeat family
PPR PF01535 184 - 214 3.3e-08 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015800)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45170 AT2G45170 AT3G60640
fragaria_vesca FvH4_7g11130
malus_domestica MD02G1210100.v1.1 MD07G1116100.v1.1
rosa_chinensis RchiOBHm_Chr1g0349151
rosa_laevigata RLG00000028600
rosa_multiflora Rmu_ssc0000150.1_g000016
rosa_roxburghii Rroxscaffold_4G00306060
rosa_rugosa Rorug01G0200800 Rorug01G0200900 Rorug01G0201000
rosa_samantha Rh1AG218500
rosa_wichuraiana Rw1G018560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 444
AccB1I GGYRCC 2 cut(s) 95, 242
AccI GTMKAC 1 cut(s) 656
AccII CGCG 2 cut(s) 79, 84
AccIII TCCGGA 1 cut(s) 436
AciI CCGC 1 cut(s) 79
AclWI GGATC 1 cut(s) 774
AcsI RAATTY 1 cut(s) 544
AcyI GRCGYC 2 cut(s) 243, 441
AfaI GTAC 1 cut(s) 300
AfiI CCNNNNNNNGG 1 cut(s) 23
AgsI TTSAA 3 cut(s) 319, 632, 779
AjnI CCWGG 2 cut(s) 398, 761
AluBI AGCT 2 cut(s) 193, 704
AluI AGCT 2 cut(s) 193, 704
Alw26I GTCTC 2 cut(s) 4, 738
AlwI GGATC 1 cut(s) 774
Aor13HI TCCGGA 1 cut(s) 436
ApoI RAATTY 1 cut(s) 544
ArsI GACNNNNNNTTYG 2 cut(s) 611, 643
Asp700I GAANNNNTTC 1 cut(s) 812
AspLEI GCGC 2 cut(s) 84, 245
AsuHPI GGTGA 4 cut(s) 55, 125, 265, 802
BaeGI GKGCMC 2 cut(s) 36, 356
BanI GGYRCC 2 cut(s) 95, 242
BanII GRGCYC 1 cut(s) 684
BccI CCATC 4 cut(s) 16, 160, 164, 217
BceAI ACGGC 1 cut(s) 329
BciT130I CCWGG 2 cut(s) 400, 763
BclI TGATCA 2 cut(s) 412, 567
BcoDI GTCTC 2 cut(s) 4, 738
BfaI CTAG 1 cut(s) 714
BfoI RGCGCY 1 cut(s) 246
BisI GCNGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 81
Bme1390I CCNGG 2 cut(s) 400, 763
BmiI GGNNCC 3 cut(s) 97, 138, 244
BmrFI CCNGG 2 cut(s) 400, 763
BmsI GCATC 1 cut(s) 280
BplI GAGNNNNNCTC 2 cut(s) 418, 450
BsaHI GRCGYC 2 cut(s) 243, 441
BsaJI CCNNGG 1 cut(s) 762
BsaWI WCCGGW 1 cut(s) 436
Bsc4I CCNNNNNNNGG 1 cut(s) 23
Bse1I ACTGG 1 cut(s) 371
Bse3DI GCAATG 1 cut(s) 738
BseAI TCCGGA 1 cut(s) 436
BseBI CCWGG 2 cut(s) 400, 763
BseDI CCNNGG 1 cut(s) 762
BseGI GGATG 5 cut(s) 175, 223, 295, 520, 539
BseLI CCNNNNNNNGG 1 cut(s) 23
BseMI GCAATG 1 cut(s) 738
BseMII CTCAG 1 cut(s) 705
BseNI ACTGG 1 cut(s) 371
BseSI GKGCMC 2 cut(s) 36, 356
Bsh1236I CGCG 2 cut(s) 79, 84
BshNI GGYRCC 2 cut(s) 95, 242
BsiSI CCGG 2 cut(s) 335, 437
BslI CCNNNNNNNGG 1 cut(s) 23
BsmAI GTCTC 2 cut(s) 4, 738
Bsp1286I GDGCHC 3 cut(s) 36, 356, 684
Bsp13I TCCGGA 1 cut(s) 436
Bsp143I GATC 3 cut(s) 412, 567, 766
BspACI CCGC 1 cut(s) 79
BspCNI CTCAG 1 cut(s) 704
BspEI TCCGGA 1 cut(s) 436
BspFNI CGCG 2 cut(s) 79, 84
BspHI TCATGA 1 cut(s) 444
BspLI GGNNCC 3 cut(s) 97, 138, 244
BspPI GGATC 1 cut(s) 774
BspT107I GGYRCC 2 cut(s) 95, 242
BsrDI GCAATG 1 cut(s) 738
BsrI ACTGG 1 cut(s) 371
BssECI CCNNGG 1 cut(s) 762
BssMI GATC 3 cut(s) 412, 567, 766
BssNI GRCGYC 2 cut(s) 243, 441
Bst2UI CCWGG 2 cut(s) 400, 763
Bst4CI ACNGT 2 cut(s) 303, 755
Bst6I CTCTTC 1 cut(s) 302
BstACI GRCGYC 2 cut(s) 243, 441
BstC8I GCNNGC 2 cut(s) 18, 332
BstDEI CTNAG 1 cut(s) 691
BstF5I GGATG 5 cut(s) 175, 223, 295, 520, 539
BstFNI CGCG 2 cut(s) 79, 84
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 2 cut(s) 84, 245
BstKTI GATC 3 cut(s) 415, 570, 769
BstMAI GTCTC 2 cut(s) 4, 738
BstMBI GATC 3 cut(s) 412, 567, 766
BstMWI GCNNNNNNNGC 1 cut(s) 190
BstNI CCWGG 2 cut(s) 400, 763
BstSCI CCNGG 2 cut(s) 398, 761
BstSLI GKGCMC 2 cut(s) 36, 356
BstUI CGCG 2 cut(s) 79, 84
BstX2I RGATCY 1 cut(s) 766
BstXI CCANNNNNNTGG 1 cut(s) 166
BstYI RGATCY 1 cut(s) 766
BtgZI GCGATG 1 cut(s) 35
BtsCI GGATG 5 cut(s) 175, 223, 295, 520, 539
BtsIMutI CAGTG 1 cut(s) 760
Cac8I GCNNGC 2 cut(s) 18, 332
CciI TCATGA 1 cut(s) 444
CfoI GCGC 2 cut(s) 84, 245
Csp6I GTAC 1 cut(s) 299
CviAII CATG 3 cut(s) 445, 520, 738
CviJI RGCY 9 cut(s) 193, 203, 313, 370, 398, 433, 639, 682, 704
CviKI_1 RGCY 9 cut(s) 193, 203, 313, 370, 398, 433, 639, 682, 704
CviQI GTAC 1 cut(s) 299
DdeI CTNAG 1 cut(s) 691
DinI GGCGCC 1 cut(s) 244
DpnI GATC 3 cut(s) 414, 569, 768
DpnII GATC 3 cut(s) 412, 567, 766
Eam1104I CTCTTC 1 cut(s) 302
EarI CTCTTC 1 cut(s) 302
Eco24I GRGCYC 1 cut(s) 684
EcoRI GAATTC 1 cut(s) 544
EcoRII CCWGG 2 cut(s) 398, 761
EcoT38I GRGCYC 1 cut(s) 684
EgeI GGCGCC 1 cut(s) 244
EheI GGCGCC 1 cut(s) 244
FaeI CATG 3 cut(s) 448, 523, 741
FatI CATG 3 cut(s) 444, 519, 737
FbaI TGATCA 2 cut(s) 412, 567
FblI GTMKAC 1 cut(s) 656
Fnu4HI GCNGC 1 cut(s) 80
FokI GGATG 5 cut(s) 182, 230, 302, 527, 546
FriOI GRGCYC 1 cut(s) 684
Fsp4HI GCNGC 1 cut(s) 80
FspBI CTAG 1 cut(s) 714
GlaI GCGC 2 cut(s) 83, 244
GluI GCNGC 1 cut(s) 80
HaeII RGCGCY 1 cut(s) 246
HapII CCGG 2 cut(s) 335, 437
HhaI GCGC 2 cut(s) 84, 245
Hin1I GRCGYC 2 cut(s) 243, 441
Hin1II CATG 3 cut(s) 448, 523, 741
Hin6I GCGC 2 cut(s) 82, 243
HinP1I GCGC 2 cut(s) 82, 243
HinfI GANTC 4 cut(s) 576, 689, 758, 799
HpaII CCGG 2 cut(s) 335, 437
HphI GGTGA 4 cut(s) 55, 125, 265, 802
Hpy166II GTNNAC 2 cut(s) 299, 657
Hpy188I TCNGA 1 cut(s) 543
Hpy188III TCNNGA 5 cut(s) 140, 437, 445, 468, 693
Hpy8I GTNNAC 2 cut(s) 299, 657
HpyAV CCTTC 5 cut(s) 269, 274, 373, 592, 785
HpyCH4III ACNGT 2 cut(s) 303, 755
HpyCH4IV ACGT 2 cut(s) 441, 456
HpyCH4V TGCA 1 cut(s) 330
HpyF10VI GCNNNNNNNGC 1 cut(s) 190
HpyF3I CTNAG 1 cut(s) 691
HpySE526I ACGT 2 cut(s) 441, 456
Hsp92I GRCGYC 2 cut(s) 243, 441
Hsp92II CATG 3 cut(s) 448, 523, 741
HspAI GCGC 2 cut(s) 82, 243
KasI GGCGCC 1 cut(s) 242
Kpn2I TCCGGA 1 cut(s) 436
Ksp22I TGATCA 2 cut(s) 412, 567
Kzo9I GATC 3 cut(s) 412, 567, 766
LweI GCATC 1 cut(s) 280
MaeI CTAG 1 cut(s) 714
MaeII ACGT 2 cut(s) 441, 456
MaeIII GTNAC 3 cut(s) 43, 145, 686
MalI GATC 3 cut(s) 414, 569, 768
MboI GATC 3 cut(s) 412, 567, 766
MboII GAAGA 3 cut(s) 319, 331, 334
MflI RGATCY 1 cut(s) 766
MhlI GDGCHC 3 cut(s) 36, 356, 684
MluCI AATT 4 cut(s) 325, 404, 544, 606
Mly113I GGCGCC 1 cut(s) 243
MlyI GAGTC 1 cut(s) 683
MroI TCCGGA 1 cut(s) 436
MroXI GAANNNNTTC 1 cut(s) 812
MseI TTAA 1 cut(s) 207
MslI CAYNNNNRTG 1 cut(s) 164
MspI CCGG 2 cut(s) 335, 437
MspR9I CCNGG 2 cut(s) 400, 763
MvaI CCWGG 2 cut(s) 400, 763
MvnI CGCG 2 cut(s) 79, 84
MwoI GCNNNNNNNGC 1 cut(s) 190
NarI GGCGCC 1 cut(s) 243
NdeII GATC 3 cut(s) 412, 567, 766
NlaIII CATG 3 cut(s) 448, 523, 741
NlaIV GGNNCC 3 cut(s) 97, 138, 244
NmuCI GTSAC 3 cut(s) 43, 145, 686
PagI TCATGA 1 cut(s) 444
PdmI GAANNNNTTC 1 cut(s) 812
PfeI GAWTC 3 cut(s) 576, 758, 799
PkrI GCNGC 1 cut(s) 81
PleI GAGTC 1 cut(s) 683
PluTI GGCGCC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 683
Psp6I CCWGG 2 cut(s) 398, 761
PspGI CCWGG 2 cut(s) 398, 761
PspN4I GGNNCC 3 cut(s) 97, 138, 244
PsuI RGATCY 1 cut(s) 766
RsaI GTAC 1 cut(s) 300
RsaNI GTAC 1 cut(s) 299
RseI CAYNNNNRTG 1 cut(s) 164
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 1 cut(s) 80
Sau3AI GATC 3 cut(s) 412, 567, 766
SchI GAGTC 1 cut(s) 683
ScrFI CCNGG 2 cut(s) 400, 763
SduI GDGCHC 3 cut(s) 36, 356, 684
SetI ASST 9 cut(s) 195, 213, 255, 285, 444, 459, 509, 706, 785
SfaNI GCATC 1 cut(s) 280
SfoI GGCGCC 1 cut(s) 244
SmiMI CAYNNNNRTG 1 cut(s) 164
Sse9I AATT 4 cut(s) 325, 404, 544, 606
SsiI CCGC 1 cut(s) 79
SspDI GGCGCC 1 cut(s) 242
SspMI CTAG 1 cut(s) 714
StyD4I CCNGG 2 cut(s) 398, 761
TaaI ACNGT 2 cut(s) 303, 755
TaiI ACGT 2 cut(s) 444, 459
TasI AATT 4 cut(s) 325, 404, 544, 606
TatI WGTACW 1 cut(s) 298
TauI GCSGC 1 cut(s) 82
TfiI GAWTC 3 cut(s) 576, 758, 799
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 1 cut(s) 760
TseFI GTSAC 3 cut(s) 43, 145, 686
Tsp45I GTSAC 3 cut(s) 43, 145, 686
TspRI CASTG 1 cut(s) 760
XapI RAATTY 1 cut(s) 544
XmiI GTMKAC 1 cut(s) 656
XmnI GAANNNNTTC 1 cut(s) 812
XspI CTAG 1 cut(s) 714
ZraI GACGTC 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.