Rmu_ssc0000177.1_g000015

Belongs to the TBCA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000177.1
OG0025458
Physical Location & Seq
Reverse (-)
101869 .. 104102
2234 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 363 bp
atgctatacaatgtgggaactatttataagacacatgatgtttcactagaaatttttggttgcaaaccgaaagatgtagtttggtttggagtttcgcggaatctgaagatcaagaccggcacttgtaaacgcctcgttaaggagtttcattcttatgagaaagaggttgagagagaggctgtgaaaacagcagacatgaaggggaaaggagctgatccttatgacctcaagcaacaggctgagttggaagaagagttgaaccagaaggaagactctgaaattgaagaagcttggatggttggaccattattgcagaagttgataagttgttccagacaacggaagcctagtcttcggccttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TBCA

Protein Analysis

120

Amino Acids

13.86

Weight (kDa)

7.67

Isoelectric Point (pI)

41.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TBCA PF02970 33 - 86 5.3e-15 Tubulin binding cofactor A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025458)

Species Orthologous Gene IDs
rosa_multiflora Rmu_ssc0000177.1_g000015
rosa_samantha Rh1AG165700 Rh1CG154300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 27
AccII CGCG 1 cut(s) 97
AciI CCGC 1 cut(s) 97
AclWI GGATC 1 cut(s) 209
AcsI RAATTY 1 cut(s) 51
AcuI CTGAAG 1 cut(s) 125
AfiI CCNNNNNNNGG 2 cut(s) 139, 339
AgsI TTSAA 2 cut(s) 259, 284
AluBI AGCT 2 cut(s) 212, 290
AluI AGCT 2 cut(s) 212, 290
AlwI GGATC 1 cut(s) 209
AoxI GGCC 1 cut(s) 356
ApoI RAATTY 1 cut(s) 51
AspS9I GGNCC 1 cut(s) 302
AvaII GGWCC 1 cut(s) 302
BbsI GAAGAC 2 cut(s) 276, 344
BccI CCATC 1 cut(s) 289
BfaI CTAG 2 cut(s) 47, 348
Bme18I GGWCC 1 cut(s) 302
BmgT120I GGNCC 1 cut(s) 302
BpiI GAAGAC 2 cut(s) 276, 344
BpuEI CTTGAG 1 cut(s) 212
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 339
Bse118I RCCGGY 1 cut(s) 116
BseGI GGATG 1 cut(s) 300
BseLI CCNNNNNNNGG 2 cut(s) 139, 339
BseMII CTCAG 1 cut(s) 231
Bsh1236I CGCG 1 cut(s) 97
BshFI GGCC 1 cut(s) 358
BsiSI CCGG 1 cut(s) 117
BslI CCNNNNNNNGG 2 cut(s) 139, 339
BsnI GGCC 1 cut(s) 358
Bsp143I GATC 2 cut(s) 108, 214
BspACI CCGC 1 cut(s) 97
BspANI GGCC 1 cut(s) 358
BspCNI CTCAG 1 cut(s) 232
BspFNI CGCG 1 cut(s) 97
BspPI GGATC 1 cut(s) 209
BsrFI RCCGGY 1 cut(s) 116
BssAI RCCGGY 1 cut(s) 116
BssMI GATC 2 cut(s) 108, 214
Bst6I CTCTTC 1 cut(s) 246
BstDEI CTNAG 2 cut(s) 240, 360
BstENI CCTNNNNNAGG 1 cut(s) 137
BstF5I GGATG 1 cut(s) 300
BstFNI CGCG 1 cut(s) 97
BstKTI GATC 2 cut(s) 111, 217
BstMBI GATC 2 cut(s) 108, 214
BstUI CGCG 1 cut(s) 97
BstV2I GAAGAC 2 cut(s) 276, 344
BsuRI GGCC 1 cut(s) 358
BtsCI GGATG 1 cut(s) 300
Cfr10I RCCGGY 1 cut(s) 116
Cfr13I GGNCC 1 cut(s) 302
CviAII CATG 2 cut(s) 35, 196
CviJI RGCY 6 cut(s) 179, 212, 239, 290, 346, 358
CviKI_1 RGCY 6 cut(s) 179, 212, 239, 290, 346, 358
DdeI CTNAG 2 cut(s) 240, 360
DpnI GATC 2 cut(s) 110, 216
DpnII GATC 2 cut(s) 108, 214
Eam1104I CTCTTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 302
Eco57I CTGAAG 1 cut(s) 125
EcoNI CCTNNNNNAGG 1 cut(s) 137
FaeI CATG 2 cut(s) 38, 199
FaiI YATR 6 cut(s) 7, 27, 36, 156, 197, 222
FatI CATG 2 cut(s) 34, 195
FokI GGATG 1 cut(s) 307
FspBI CTAG 2 cut(s) 47, 348
HaeIII GGCC 1 cut(s) 358
HapII CCGG 1 cut(s) 117
Hin1II CATG 2 cut(s) 38, 199
HindIII AAGCTT 1 cut(s) 288
HinfI GANTC 2 cut(s) 100, 272
HpaII CCGG 1 cut(s) 117
Hpy166II GTNNAC 1 cut(s) 128
Hpy188I TCNGA 2 cut(s) 105, 277
Hpy188III TCNNGA 2 cut(s) 112, 333
Hpy8I GTNNAC 1 cut(s) 128
HpyAV CCTTC 2 cut(s) 193, 259
HpyCH4V TGCA 2 cut(s) 63, 313
HpyF3I CTNAG 2 cut(s) 240, 360
Hsp92II CATG 2 cut(s) 38, 199
Kzo9I GATC 2 cut(s) 108, 214
LmnI GCTCC 1 cut(s) 209
LpnPI CCDG 4 cut(s) 130, 221, 275, 346
MaeI CTAG 2 cut(s) 47, 348
MalI GATC 2 cut(s) 110, 216
MboI GATC 2 cut(s) 108, 214
MboII GAAGA 6 cut(s) 118, 260, 263, 281, 296, 344
MluCI AATT 2 cut(s) 51, 279
MlyI GAGTC 1 cut(s) 266
MmeI TCCRAC 2 cut(s) 225, 280
MnlI CCTC 4 cut(s) 143, 157, 169, 236
MseI TTAA 1 cut(s) 138
MslI CAYNNNNRTG 1 cut(s) 153
MspI CCGG 1 cut(s) 117
MvnI CGCG 1 cut(s) 97
NdeII GATC 2 cut(s) 108, 214
NlaIII CATG 2 cut(s) 38, 199
PfeI GAWTC 1 cut(s) 100
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
PsiI TTATAA 1 cut(s) 27
PspPI GGNCC 1 cut(s) 302
RseI CAYNNNNRTG 1 cut(s) 153
SaqAI TTAA 1 cut(s) 138
Sau3AI GATC 2 cut(s) 108, 214
Sau96I GGNCC 1 cut(s) 302
SchI GAGTC 1 cut(s) 266
SetI ASST 4 cut(s) 168, 214, 228, 292
SinI GGWCC 1 cut(s) 302
SmiMI CAYNNNNRTG 1 cut(s) 153
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 2 cut(s) 51, 279
SsiI CCGC 1 cut(s) 97
SspMI CTAG 2 cut(s) 47, 348
TasI AATT 2 cut(s) 51, 279
TfiI GAWTC 1 cut(s) 100
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TspDTI ATGAA 2 cut(s) 137, 212
TspGWI ACGGA 1 cut(s) 355
VpaK11BI GGWCC 1 cut(s) 302
XagI CCTNNNNNAGG 1 cut(s) 137
XapI RAATTY 1 cut(s) 51
XspI CTAG 2 cut(s) 47, 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.