Rh1AG165700

Belongs to the TBCA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0025458
Physical Location & Seq
Reverse (-)
31607504 .. 31615100
7597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG165700.1

Sequence Viewer

Length: 588 bp
ATGGTTCTAAGAAAAACATATATATCTAGCTTTAAGGTTTTGCTGTGGAATCATTATTTCCCATCTTTTCCCAATTTCGATGTCTCAAACCGCTCAATTTCAACGAGCTTAGTTAACCCAGTTCATCTTAGATTACCCACACAGAACCCAAGATTTATGGGTATTGTGGAAGATGGAGATGAGGGTGGGAATGATACTAGAACAGTGGTTGCTGATTTTGATGCTGATGTGGGGAAAAACGCCCAGAAGAGGACGGAGGACGCGACAGTCGCCGGTAACGCATCCCGATTTCACGACTCTCTGGTGATATGGCAGCTCTTAAGGAATCTGAAAATCAAGACCGGCACTTGTAAACGCCTCGTTAAGGAGTTTCATTCTTATGAGAAAGAGGTTGAGAGAGAGGCTGTGAAAACAGCAGACATGAAGGGGAAAGGAGCTGATCCTTATGACCTCAAGCAACAGGCTGAGTTGGAAGAAGAGTTGAACCAGAAGGAAGACTCTGAAATTGAAGAAGCTTGGATGGTTGGACCATTATTGCAGAAGTTGATAAGTTGTTCCAGACAACGGAAGCCTAGTCTTCGGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TBCA

Protein Analysis

195

Amino Acids

22.27

Weight (kDa)

6.92

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TBCA PF02970 107 - 161 3e-14 Tubulin binding cofactor A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025458)

Species Orthologous Gene IDs
rosa_multiflora Rmu_ssc0000177.1_g000015
rosa_samantha Rh1AG165700 Rh1CG154300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 266
AccBSI CCGCTC 1 cut(s) 93
AccII CGCG 1 cut(s) 263
AciI CCGC 1 cut(s) 91
AclWI GGATC 1 cut(s) 434
AfiI CCNNNNNNNGG 3 cut(s) 249, 364, 564
AflII CTTAAG 1 cut(s) 319
AgsI TTSAA 3 cut(s) 102, 484, 509
AluBI AGCT 5 cut(s) 30, 108, 316, 437, 515
AluI AGCT 5 cut(s) 30, 108, 316, 437, 515
Alw26I GTCTC 1 cut(s) 88
AlwI GGATC 1 cut(s) 434
AoxI GGCC 1 cut(s) 581
ApeKI GCWGC 1 cut(s) 313
AspS9I GGNCC 1 cut(s) 527
AsuHPI GGTGA 1 cut(s) 316
AvaII GGWCC 1 cut(s) 527
BbsI GAAGAC 2 cut(s) 501, 569
BbvI GCAGC 1 cut(s) 325
BccI CCATC 3 cut(s) 70, 167, 514
BcoDI GTCTC 1 cut(s) 88
BfaI CTAG 3 cut(s) 27, 198, 573
BfrI CTTAAG 1 cut(s) 319
BisI GCNGC 1 cut(s) 314
BlsI GCNGC 1 cut(s) 315
Bme18I GGWCC 1 cut(s) 527
BmgT120I GGNCC 1 cut(s) 527
BmrI ACTGGG 1 cut(s) 113
BmsI GCATC 2 cut(s) 211, 290
BmuI ACTGGG 1 cut(s) 113
BpiI GAAGAC 2 cut(s) 501, 569
BpuEI CTTGAG 1 cut(s) 437
Bsc4I CCNNNNNNNGG 3 cut(s) 249, 364, 564
Bse118I RCCGGY 2 cut(s) 272, 341
Bse1I ACTGG 1 cut(s) 119
BseGI GGATG 2 cut(s) 281, 525
BseLI CCNNNNNNNGG 3 cut(s) 249, 364, 564
BseMII CTCAG 1 cut(s) 456
BseNI ACTGG 1 cut(s) 119
BseXI GCAGC 1 cut(s) 325
Bsh1236I CGCG 1 cut(s) 263
BshFI GGCC 1 cut(s) 583
BsiSI CCGG 2 cut(s) 273, 342
BslI CCNNNNNNNGG 3 cut(s) 249, 364, 564
BsmAI GTCTC 1 cut(s) 88
BsnI GGCC 1 cut(s) 583
Bsp143I GATC 1 cut(s) 439
BspACI CCGC 1 cut(s) 91
BspANI GGCC 1 cut(s) 583
BspCNI CTCAG 1 cut(s) 457
BspFNI CGCG 1 cut(s) 263
BspPI GGATC 1 cut(s) 434
BspTI CTTAAG 1 cut(s) 319
BsrBI CCGCTC 1 cut(s) 93
BsrFI RCCGGY 2 cut(s) 272, 341
BsrI ACTGG 1 cut(s) 119
BssAI RCCGGY 2 cut(s) 272, 341
BssMI GATC 1 cut(s) 439
Bst4CI ACNGT 2 cut(s) 205, 268
Bst6I CTCTTC 2 cut(s) 242, 471
BstAFI CTTAAG 1 cut(s) 319
BstDEI CTNAG 5 cut(s) 8, 109, 128, 465, 585
BstENI CCTNNNNNAGG 1 cut(s) 362
BstF5I GGATG 2 cut(s) 281, 525
BstFNI CGCG 1 cut(s) 263
BstKTI GATC 1 cut(s) 442
BstMAI GTCTC 1 cut(s) 88
BstMBI GATC 1 cut(s) 439
BstMWI GCNNNNNNNGC 2 cut(s) 269, 278
BstUI CGCG 1 cut(s) 263
BstV1I GCAGC 1 cut(s) 325
BstV2I GAAGAC 2 cut(s) 501, 569
BsuRI GGCC 1 cut(s) 583
BtsCI GGATG 2 cut(s) 281, 525
BtsIMutI CAGTG 1 cut(s) 210
Cfr10I RCCGGY 2 cut(s) 272, 341
Cfr13I GGNCC 1 cut(s) 527
CseI GACGC 1 cut(s) 269
CviAII CATG 1 cut(s) 421
CviJI RGCY 9 cut(s) 30, 108, 316, 404, 437, 464, 515, 571, 583
CviKI_1 RGCY 9 cut(s) 30, 108, 316, 404, 437, 464, 515, 571, 583
DdeI CTNAG 5 cut(s) 8, 109, 128, 465, 585
DpnI GATC 1 cut(s) 441
DpnII GATC 1 cut(s) 439
DrdI GACNNNNNNGTC 1 cut(s) 266
DseDI GACNNNNNNGTC 1 cut(s) 266
Eam1104I CTCTTC 2 cut(s) 242, 471
EarI CTCTTC 2 cut(s) 242, 471
Eco47I GGWCC 1 cut(s) 527
EcoNI CCTNNNNNAGG 1 cut(s) 362
FaeI CATG 1 cut(s) 424
FaiI YATR 8 cut(s) 19, 21, 23, 158, 310, 381, 422, 447
FatI CATG 1 cut(s) 420
Fnu4HI GCNGC 1 cut(s) 314
FokI GGATG 2 cut(s) 268, 532
Fsp4HI GCNGC 1 cut(s) 314
FspBI CTAG 3 cut(s) 27, 198, 573
GluI GCNGC 1 cut(s) 314
HaeIII GGCC 1 cut(s) 583
HapII CCGG 2 cut(s) 273, 342
HgaI GACGC 1 cut(s) 269
Hin1II CATG 1 cut(s) 424
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HindIII AAGCTT 1 cut(s) 513
HinfI GANTC 4 cut(s) 49, 296, 325, 497
HpaI GTTAAC 1 cut(s) 115
HpaII CCGG 2 cut(s) 273, 342
HphI GGTGA 1 cut(s) 316
Hpy166II GTNNAC 2 cut(s) 115, 353
Hpy188I TCNGA 2 cut(s) 330, 502
Hpy188III TCNNGA 4 cut(s) 285, 293, 337, 558
Hpy8I GTNNAC 2 cut(s) 115, 353
HpyAV CCTTC 2 cut(s) 418, 484
HpyCH4III ACNGT 2 cut(s) 205, 268
HpyCH4V TGCA 1 cut(s) 538
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 278
HpyF3I CTNAG 5 cut(s) 8, 109, 128, 465, 585
Hsp92II CATG 1 cut(s) 424
KspAI GTTAAC 1 cut(s) 115
Kzo9I GATC 1 cut(s) 439
LmnI GCTCC 1 cut(s) 434
LpnPI CCDG 8 cut(s) 132, 257, 286, 287, 355, 446, 500, 571
Lsp1109I GCAGC 1 cut(s) 325
LweI GCATC 2 cut(s) 211, 290
MaeI CTAG 3 cut(s) 27, 198, 573
MaeIII GTNAC 1 cut(s) 275
MalI GATC 1 cut(s) 441
MbiI CCGCTC 1 cut(s) 93
MboI GATC 1 cut(s) 439
MboII GAAGA 7 cut(s) 182, 259, 485, 488, 506, 521, 569
MluCI AATT 3 cut(s) 73, 96, 504
MlyI GAGTC 2 cut(s) 290, 491
MmeI TCCRAC 2 cut(s) 450, 505
MnlI CCTC 7 cut(s) 175, 243, 250, 368, 382, 394, 461
MseI TTAA 4 cut(s) 33, 114, 320, 363
MslI CAYNNNNRTG 1 cut(s) 378
MspCI CTTAAG 1 cut(s) 319
MspI CCGG 2 cut(s) 273, 342
MvnI CGCG 1 cut(s) 263
MwoI GCNNNNNNNGC 2 cut(s) 269, 278
NdeII GATC 1 cut(s) 439
NlaIII CATG 1 cut(s) 424
PcsI WCGNNNNNNNCGW 1 cut(s) 260
PfeI GAWTC 2 cut(s) 49, 325
PkrI GCNGC 1 cut(s) 315
PleI GAGTC 2 cut(s) 290, 491
PpsI GAGTC 2 cut(s) 290, 491
PspPI GGNCC 1 cut(s) 527
RseI CAYNNNNRTG 1 cut(s) 378
SaqAI TTAA 4 cut(s) 33, 114, 320, 363
SatI GCNGC 1 cut(s) 314
Sau3AI GATC 1 cut(s) 439
Sau96I GGNCC 1 cut(s) 527
SchI GAGTC 2 cut(s) 290, 491
SetI ASST 8 cut(s) 32, 39, 110, 318, 393, 439, 453, 517
SfaNI GCATC 2 cut(s) 211, 290
SinI GGWCC 1 cut(s) 527
SmiMI CAYNNNNRTG 1 cut(s) 378
SmlI CTYRAG 2 cut(s) 319, 452
SmoI CTYRAG 2 cut(s) 319, 452
Sse9I AATT 3 cut(s) 73, 96, 504
SsiI CCGC 1 cut(s) 91
SspMI CTAG 3 cut(s) 27, 198, 573
TaaI ACNGT 2 cut(s) 205, 268
TaqI TCGA 1 cut(s) 78
TasI AATT 3 cut(s) 73, 96, 504
TfiI GAWTC 2 cut(s) 49, 325
Tru1I TTAA 4 cut(s) 33, 114, 320, 363
Tru9I TTAA 4 cut(s) 33, 114, 320, 363
TscAI CASTG 1 cut(s) 210
TseI GCWGC 1 cut(s) 313
TspDTI ATGAA 3 cut(s) 113, 362, 437
TspGWI ACGGA 2 cut(s) 269, 580
TspRI CASTG 1 cut(s) 210
Vha464I CTTAAG 1 cut(s) 319
VpaK11BI GGWCC 1 cut(s) 527
XagI CCTNNNNNAGG 1 cut(s) 362
XspI CTAG 3 cut(s) 27, 198, 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.