Rh1CG154300

Belongs to the TBCA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0025458
Physical Location & Seq
Reverse (-)
34106572 .. 34109876
3305 bp
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UTR
Exon/CDS
Intron
Rh1CG154300.1

Sequence Viewer

Length: 354 bp
ATGACCGCCCAGAAGAGGACGGAGGACGCGACAGTCGCCGGTAACGCATCCCGATTTCACGACTCTCTGGTGATATGGCAGCTCTTAAGGAATCTGAAAATCAAGACCGGCACTTGTAAACGCCTCGTTAAGGAGTTTCATTCTTATGAGAAAGAGGTTGAGAGAGAGGCTGTGAAAACAGCAGACATGAAGGGGAAAGGAGCTGATCCTTATGACCTCAAGCAACAGGCTGAGTTGGAAGAAGAGTTGAACCAGAAGGAAGACTCTGAAATTGAAGAAGCTTGGATGGTTGGACCATTATTGCAGAAGTTGATAAGTTGTTCCAGACAACGGAAGCCTAGTCTTCGGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TBCA

Protein Analysis

117

Amino Acids

13.47

Weight (kDa)

7.75

Isoelectric Point (pI)

51.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TBCA PF02970 29 - 83 3.3e-15 Tubulin binding cofactor A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025458)

Species Orthologous Gene IDs
rosa_multiflora Rmu_ssc0000177.1_g000015
rosa_samantha Rh1AG165700 Rh1CG154300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 32
AccII CGCG 1 cut(s) 29
AciI CCGC 1 cut(s) 6
AclWI GGATC 1 cut(s) 200
AfiI CCNNNNNNNGG 3 cut(s) 15, 130, 330
AflII CTTAAG 1 cut(s) 85
AgsI TTSAA 2 cut(s) 250, 275
AluBI AGCT 3 cut(s) 82, 203, 281
AluI AGCT 3 cut(s) 82, 203, 281
AlwI GGATC 1 cut(s) 200
AoxI GGCC 1 cut(s) 347
ApeKI GCWGC 1 cut(s) 79
AspS9I GGNCC 1 cut(s) 293
AsuHPI GGTGA 1 cut(s) 82
AvaII GGWCC 1 cut(s) 293
BbsI GAAGAC 2 cut(s) 267, 335
BbvI GCAGC 1 cut(s) 91
BccI CCATC 1 cut(s) 280
BfaI CTAG 1 cut(s) 339
BfrI CTTAAG 1 cut(s) 85
BisI GCNGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 81
Bme18I GGWCC 1 cut(s) 293
BmgT120I GGNCC 1 cut(s) 293
BmsI GCATC 1 cut(s) 56
BpiI GAAGAC 2 cut(s) 267, 335
BpuEI CTTGAG 1 cut(s) 203
Bsc4I CCNNNNNNNGG 3 cut(s) 15, 130, 330
Bse118I RCCGGY 2 cut(s) 38, 107
BseGI GGATG 2 cut(s) 47, 291
BseLI CCNNNNNNNGG 3 cut(s) 15, 130, 330
BseMII CTCAG 1 cut(s) 222
BseXI GCAGC 1 cut(s) 91
Bsh1236I CGCG 1 cut(s) 29
BshFI GGCC 1 cut(s) 349
BsiSI CCGG 2 cut(s) 39, 108
BslI CCNNNNNNNGG 3 cut(s) 15, 130, 330
BsnI GGCC 1 cut(s) 349
Bsp143I GATC 1 cut(s) 205
BspACI CCGC 1 cut(s) 6
BspANI GGCC 1 cut(s) 349
BspCNI CTCAG 1 cut(s) 223
BspFNI CGCG 1 cut(s) 29
BspPI GGATC 1 cut(s) 200
BspTI CTTAAG 1 cut(s) 85
BsrFI RCCGGY 2 cut(s) 38, 107
BssAI RCCGGY 2 cut(s) 38, 107
BssMI GATC 1 cut(s) 205
Bst4CI ACNGT 1 cut(s) 34
Bst6I CTCTTC 2 cut(s) 8, 237
BstAFI CTTAAG 1 cut(s) 85
BstDEI CTNAG 2 cut(s) 231, 351
BstENI CCTNNNNNAGG 1 cut(s) 128
BstF5I GGATG 2 cut(s) 47, 291
BstFNI CGCG 1 cut(s) 29
BstKTI GATC 1 cut(s) 208
BstMBI GATC 1 cut(s) 205
BstMWI GCNNNNNNNGC 2 cut(s) 35, 44
BstUI CGCG 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 91
BstV2I GAAGAC 2 cut(s) 267, 335
BsuRI GGCC 1 cut(s) 349
BtsCI GGATG 2 cut(s) 47, 291
Cfr10I RCCGGY 2 cut(s) 38, 107
Cfr13I GGNCC 1 cut(s) 293
CseI GACGC 1 cut(s) 35
CviAII CATG 1 cut(s) 187
CviJI RGCY 7 cut(s) 82, 170, 203, 230, 281, 337, 349
CviKI_1 RGCY 7 cut(s) 82, 170, 203, 230, 281, 337, 349
DdeI CTNAG 2 cut(s) 231, 351
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
DrdI GACNNNNNNGTC 1 cut(s) 32
DseDI GACNNNNNNGTC 1 cut(s) 32
Eam1104I CTCTTC 2 cut(s) 8, 237
EarI CTCTTC 2 cut(s) 8, 237
Eco47I GGWCC 1 cut(s) 293
EcoNI CCTNNNNNAGG 1 cut(s) 128
FaeI CATG 1 cut(s) 190
FaiI YATR 4 cut(s) 76, 147, 188, 213
FatI CATG 1 cut(s) 186
Fnu4HI GCNGC 1 cut(s) 80
FokI GGATG 2 cut(s) 34, 298
Fsp4HI GCNGC 1 cut(s) 80
FspBI CTAG 1 cut(s) 339
GluI GCNGC 1 cut(s) 80
HaeIII GGCC 1 cut(s) 349
HapII CCGG 2 cut(s) 39, 108
HgaI GACGC 1 cut(s) 35
Hin1II CATG 1 cut(s) 190
HindIII AAGCTT 1 cut(s) 279
HinfI GANTC 3 cut(s) 62, 91, 263
HpaII CCGG 2 cut(s) 39, 108
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 119
Hpy188I TCNGA 2 cut(s) 96, 268
Hpy188III TCNNGA 4 cut(s) 51, 59, 103, 324
Hpy8I GTNNAC 1 cut(s) 119
HpyAV CCTTC 2 cut(s) 184, 250
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4V TGCA 1 cut(s) 304
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 44
HpyF3I CTNAG 2 cut(s) 231, 351
Hsp92II CATG 1 cut(s) 190
Kzo9I GATC 1 cut(s) 205
LmnI GCTCC 1 cut(s) 200
LpnPI CCDG 7 cut(s) 23, 52, 53, 121, 212, 266, 337
Lsp1109I GCAGC 1 cut(s) 91
LweI GCATC 1 cut(s) 56
MaeI CTAG 1 cut(s) 339
MaeIII GTNAC 1 cut(s) 41
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MboII GAAGA 6 cut(s) 25, 251, 254, 272, 287, 335
MluCI AATT 1 cut(s) 270
MlyI GAGTC 2 cut(s) 56, 257
MmeI TCCRAC 2 cut(s) 216, 271
MnlI CCTC 6 cut(s) 9, 16, 134, 148, 160, 227
MseI TTAA 2 cut(s) 86, 129
MslI CAYNNNNRTG 1 cut(s) 144
MspCI CTTAAG 1 cut(s) 85
MspI CCGG 2 cut(s) 39, 108
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 2 cut(s) 35, 44
NdeII GATC 1 cut(s) 205
NlaIII CATG 1 cut(s) 190
PcsI WCGNNNNNNNCGW 1 cut(s) 26
PfeI GAWTC 1 cut(s) 91
PkrI GCNGC 1 cut(s) 81
PleI GAGTC 2 cut(s) 56, 257
PpsI GAGTC 2 cut(s) 56, 257
PspPI GGNCC 1 cut(s) 293
RseI CAYNNNNRTG 1 cut(s) 144
SaqAI TTAA 2 cut(s) 86, 129
SatI GCNGC 1 cut(s) 80
Sau3AI GATC 1 cut(s) 205
Sau96I GGNCC 1 cut(s) 293
SchI GAGTC 2 cut(s) 56, 257
SetI ASST 5 cut(s) 84, 159, 205, 219, 283
SfaNI GCATC 1 cut(s) 56
SinI GGWCC 1 cut(s) 293
SmiMI CAYNNNNRTG 1 cut(s) 144
SmlI CTYRAG 2 cut(s) 85, 218
SmoI CTYRAG 2 cut(s) 85, 218
Sse9I AATT 1 cut(s) 270
SsiI CCGC 1 cut(s) 6
SspMI CTAG 1 cut(s) 339
TaaI ACNGT 1 cut(s) 34
TasI AATT 1 cut(s) 270
TfiI GAWTC 1 cut(s) 91
Tru1I TTAA 2 cut(s) 86, 129
Tru9I TTAA 2 cut(s) 86, 129
TseI GCWGC 1 cut(s) 79
TspDTI ATGAA 2 cut(s) 128, 203
TspGWI ACGGA 2 cut(s) 35, 346
Vha464I CTTAAG 1 cut(s) 85
VpaK11BI GGWCC 1 cut(s) 293
XagI CCTNNNNNAGG 1 cut(s) 128
XspI CTAG 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.