Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000259.1

Orthogroup ID

OG0021619

Physical Location & Seq

Genomic Coordinates Forward (+)

99974 .. 100513

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atgacgacgtcgtctgctcagtcccaacaatccactccctcctcctgggctttgctcccttggaggacctggatctcgttatcgcttctgtcaaagttaacggatgccgctcgccgaccaatcgacaccatcaaccgctgtctcatgagcttcctctacttacgctcctccgccactccctcagctccctacaaaggcgtcaccacctccgacgtcaccgtcgaccaaacccgcaacctctggttccgcttctacgtcccctctacgacgtcgtcttcctccgcctctttacccgtcttcgttttcttccacgacggcggcttcagctttctcagccccgactcctacgcctacgactccgtctgccgcaaattctcccgcgaaatcccctccgtcgtagtctccgtcaactaccgcctctccccagagcacggctacccctgccagtacgacgaaggcctcgacgtccttaaattcctaaagggaaaagaggaatgggaagctgggattcgaaccttggtggataaggactcaaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052689 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04075 ko05134 map04075 map05134

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

179

Amino Acids

20.15

Weight (kDa)

7.69

Isoelectric Point (pI)

52.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COesterase	PF00135	84 - 142	1.9e-07	Carboxylesterase family
Abhydrolase_3	PF07859	100 - 170	7.7e-17	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021619)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003393.1_g000010 Rmu_sc0017088.1_g000001 Rmu_ssc0000259.1_g000018
rosa_samantha	Rh6BG145300 Rh6DG129600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	10, 218
AatII	GACGTC	4 cut(s)	11, 216, 272, 468
AccBSI	CCGCTC	1 cut(s)	110
AccI	GTMKAC	1 cut(s)	222
AccII	CGCG	1 cut(s)	381
AclWI	GGATC	1 cut(s)	80
AcsI	RAATTY	2 cut(s)	371, 473
AcuI	CTGAAG	1 cut(s)	307
AcyI	GRCGYC	5 cut(s)	8, 198, 213, 269, 465
AfaI	GTAC	1 cut(s)	449
AfiI	CCNNNNNNNGG	3 cut(s)	45, 194, 431
AjnI	CCWGG	2 cut(s)	44, 68
AluBI	AGCT	4 cut(s)	150, 185, 327, 503
AluI	AGCT	4 cut(s)	150, 185, 327, 503
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	2 cut(s)	146, 406
AlwI	GGATC	1 cut(s)	80
AoxI	GGCC	1 cut(s)	457
ApoI	RAATTY	2 cut(s)	371, 473
AspS9I	GGNCC	1 cut(s)	66
AsuHPI	GGTGA	2 cut(s)	193, 208
AsuII	TTCGAA	1 cut(s)	511
AvaII	GGWCC	1 cut(s)	66
BbsI	GAAGAC	2 cut(s)	267, 289
Bbv12I	GWGCWC	1 cut(s)	432
BbvCI	CCTCAGC	1 cut(s)	181
BccI	CCATC	1 cut(s)	137
BceAI	ACGGC	2 cut(s)	331, 448
BciT130I	CCWGG	2 cut(s)	46, 70
BcoDI	GTCTC	2 cut(s)	146, 406
BisI	GCNGC	3 cut(s)	108, 319, 367
BlsI	GCNGC	3 cut(s)	109, 320, 368
Bme1390I	CCNGG	2 cut(s)	46, 70
Bme18I	GGWCC	1 cut(s)	66
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	1 cut(s)	245
BmrFI	CCNGG	2 cut(s)	46, 70
BmsI	GCATC	1 cut(s)	94
BpiI	GAAGAC	2 cut(s)	267, 289
Bpu10I	CCTNAGC	1 cut(s)	181
Bpu14I	TTCGAA	1 cut(s)	511
BsaHI	GRCGYC	5 cut(s)	8, 198, 213, 269, 465
BsaJI	CCNNGG	3 cut(s)	45, 59, 516
BsaXI	ACNNNNNCTCC	4 cut(s)	149, 179, 404, 434
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 194, 431
Bse1I	ACTGG	1 cut(s)	445
BseBI	CCWGG	2 cut(s)	46, 70
BseDI	CCNNGG	3 cut(s)	45, 59, 516
BseGI	GGATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	3 cut(s)	45, 194, 431
BseMII	CTCAG	3 cut(s)	32, 195, 346
BseNI	ACTGG	1 cut(s)	445
BseRI	GAGGAG	2 cut(s)	31, 157
BseYI	CCCAGC	1 cut(s)	503
Bsh1236I	CGCG	1 cut(s)	381
BshFI	GGCC	1 cut(s)	459
BsiHKAI	GWGCWC	1 cut(s)	432
BslFI	GGGAC	2 cut(s)	7, 242
BslI	CCNNNNNNNGG	3 cut(s)	45, 194, 431
BsmAI	GTCTC	2 cut(s)	146, 406
BsmFI	GGGAC	2 cut(s)	7, 242
BsnI	GGCC	1 cut(s)	459
Bsp119I	TTCGAA	1 cut(s)	511
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp143I	GATC	1 cut(s)	72
BspANI	GGCC	1 cut(s)	459
BspCNI	CTCAG	3 cut(s)	31, 194, 345
BspFNI	CGCG	1 cut(s)	381
BspHI	TCATGA	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	245
BspPI	GGATC	1 cut(s)	80
BspT104I	TTCGAA	1 cut(s)	511
BsrBI	CCGCTC	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	445
BssECI	CCNNGG	3 cut(s)	45, 59, 516
BssMI	GATC	1 cut(s)	72
BssNI	GRCGYC	5 cut(s)	8, 198, 213, 269, 465
BssT1I	CCWWGG	2 cut(s)	59, 516
Bst2UI	CCWGG	2 cut(s)	46, 70
Bst4CI	ACNGT	1 cut(s)	220
BstACI	GRCGYC	5 cut(s)	8, 198, 213, 269, 465
BstBI	TTCGAA	1 cut(s)	511
BstC8I	GCNNGC	1 cut(s)	112
BstDEI	CTNAG	3 cut(s)	18, 181, 332
BstF5I	GGATG	1 cut(s)	109
BstFNI	CGCG	1 cut(s)	381
BstKTI	GATC	1 cut(s)	75
BstMAI	GTCTC	2 cut(s)	146, 406
BstMBI	GATC	1 cut(s)	72
BstMWI	GCNNNNNNNGC	3 cut(s)	324, 333, 441
BstNI	CCWGG	2 cut(s)	46, 70
BstSCI	CCNGG	2 cut(s)	44, 68
BstUI	CGCG	1 cut(s)	381
BstV2I	GAAGAC	2 cut(s)	267, 289
BstX2I	RGATCY	1 cut(s)	72
BstYI	RGATCY	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	459
BtsCI	GGATG	1 cut(s)	109
Cac8I	GCNNGC	1 cut(s)	112
CciI	TCATGA	1 cut(s)	144
Cfr13I	GGNCC	1 cut(s)	66
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	448
CviAII	CATG	1 cut(s)	145
CviJI	RGCY	9 cut(s)	50, 150, 185, 321, 327, 336, 435, 459, 503
CviKI_1	RGCY	9 cut(s)	50, 150, 185, 321, 327, 336, 435, 459, 503
CviQI	GTAC	1 cut(s)	448
DdeI	CTNAG	3 cut(s)	18, 181, 332
DpnI	GATC	1 cut(s)	74
DpnII	GATC	1 cut(s)	72
DrdI	GACNNNNNNGTC	2 cut(s)	10, 218
DseDI	GACNNNNNNGTC	2 cut(s)	10, 218
EciI	GGCGGA	2 cut(s)	160, 271
Eco130I	CCWWGG	2 cut(s)	59, 516
Eco147I	AGGCCT	1 cut(s)	459
Eco47I	GGWCC	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	307
EcoO109I	RGGNCCY	1 cut(s)	66
EcoRII	CCWGG	2 cut(s)	44, 68
EcoT14I	CCWWGG	2 cut(s)	59, 516
ErhI	CCWWGG	2 cut(s)	59, 516
FaeI	CATG	1 cut(s)	148
FaiI	YATR	1 cut(s)	146
FaqI	GGGAC	2 cut(s)	7, 242
FatI	CATG	1 cut(s)	144
FauI	CCCGC	2 cut(s)	239, 386
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	3 cut(s)	108, 319, 367
FokI	GGATG	1 cut(s)	116
Fsp4HI	GCNGC	3 cut(s)	108, 319, 367
GluI	GCNGC	3 cut(s)	108, 319, 367
GsaI	CCCAGC	1 cut(s)	507
HaeIII	GGCC	1 cut(s)	459
HgaI	GACGC	1 cut(s)	187
Hin1I	GRCGYC	5 cut(s)	8, 198, 213, 269, 465
Hin1II	CATG	1 cut(s)	148
HincII	GTYRAC	3 cut(s)	99, 223, 409
HindII	GTYRAC	3 cut(s)	99, 223, 409
HinfI	GANTC	4 cut(s)	341, 356, 508, 530
HpaI	GTTAAC	1 cut(s)	99
HphI	GGTGA	2 cut(s)	193, 208
Hpy166II	GTNNAC	3 cut(s)	99, 223, 409
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	1 cut(s)	145
Hpy8I	GTNNAC	3 cut(s)	99, 223, 409
HpyAV	CCTTC	1 cut(s)	449
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4IV	ACGT	5 cut(s)	8, 213, 255, 269, 465
HpyF10VI	GCNNNNNNNGC	3 cut(s)	324, 333, 441
HpyF3I	CTNAG	3 cut(s)	18, 181, 332
HpySE526I	ACGT	5 cut(s)	8, 213, 255, 269, 465
Hsp92I	GRCGYC	5 cut(s)	8, 198, 213, 269, 465
Hsp92II	CATG	1 cut(s)	148
KspAI	GTTAAC	1 cut(s)	99
Kzo9I	GATC	1 cut(s)	72
LmnI	GCTCC	3 cut(s)	60, 170, 190
LpnPI	CCDG	9 cut(s)	31, 55, 58, 82, 226, 438, 454, 458, 489
LweI	GCATC	1 cut(s)	94
MaeII	ACGT	5 cut(s)	8, 213, 255, 269, 465
MaeIII	GTNAC	2 cut(s)	199, 214
MalI	GATC	1 cut(s)	74
MbiI	CCGCTC	1 cut(s)	110
MboI	GATC	1 cut(s)	72
MboII	GAAGA	3 cut(s)	267, 289, 298
MflI	RGATCY	1 cut(s)	72
MhlI	GDGCHC	1 cut(s)	432
MluCI	AATT	2 cut(s)	371, 473
MlyI	GAGTC	3 cut(s)	335, 350, 524
MmeI	TCCRAC	1 cut(s)	234
MseI	TTAA	2 cut(s)	98, 471
MspA1I	CMGCKG	1 cut(s)	138
MspR9I	CCNGG	2 cut(s)	46, 70
MvaI	CCWGG	2 cut(s)	46, 70
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	3 cut(s)	324, 333, 441
NdeII	GATC	1 cut(s)	72
NlaIII	CATG	1 cut(s)	148
NlaIV	GGNNCC	1 cut(s)	245
NmuCI	GTSAC	2 cut(s)	199, 214
NspV	TTCGAA	1 cut(s)	511
PagI	TCATGA	1 cut(s)	144
PceI	AGGCCT	1 cut(s)	459
PcsI	WCGNNNNNNNCGW	3 cut(s)	219, 402, 459
PfeI	GAWTC	1 cut(s)	508
PflFI	GACNNNGTC	4 cut(s)	7, 10, 271, 359
PkrI	GCNGC	3 cut(s)	109, 320, 368
PleI	GAGTC	3 cut(s)	335, 350, 524
PpsI	GAGTC	3 cut(s)	335, 350, 524
PpuMI	RGGWCCY	1 cut(s)	66
Psp5II	RGGWCCY	1 cut(s)	66
Psp6I	CCWGG	2 cut(s)	44, 68
PspFI	CCCAGC	1 cut(s)	503
PspGI	CCWGG	2 cut(s)	44, 68
PspN4I	GGNNCC	1 cut(s)	245
PspPI	GGNCC	1 cut(s)	66
PspPPI	RGGWCCY	1 cut(s)	66
PsuI	RGATCY	1 cut(s)	72
PsyI	GACNNNGTC	4 cut(s)	7, 10, 271, 359
RsaI	GTAC	1 cut(s)	449
RsaNI	GTAC	1 cut(s)	448
SalI	GTCGAC	1 cut(s)	221
SaqAI	TTAA	2 cut(s)	98, 471
SatI	GCNGC	3 cut(s)	108, 319, 367
Sau3AI	GATC	1 cut(s)	72
Sau96I	GGNCC	1 cut(s)	66
SchI	GAGTC	3 cut(s)	335, 350, 524
ScrFI	CCNGG	2 cut(s)	46, 70
SduI	GDGCHC	1 cut(s)	432
SfaNI	GCATC	1 cut(s)	94
SfuI	TTCGAA	1 cut(s)	511
SinI	GGWCC	1 cut(s)	66
Sse9I	AATT	2 cut(s)	371, 473
SseBI	AGGCCT	1 cut(s)	459
StuI	AGGCCT	1 cut(s)	459
StyD4I	CCNGG	2 cut(s)	44, 68
StyI	CCWWGG	2 cut(s)	59, 516
TaaI	ACNGT	1 cut(s)	220
TaiI	ACGT	5 cut(s)	11, 216, 258, 272, 468
TaqI	TCGA	4 cut(s)	123, 222, 462, 511
TasI	AATT	2 cut(s)	371, 473
TauI	GCSGC	3 cut(s)	110, 321, 369
TfiI	GAWTC	1 cut(s)	508
Tru1I	TTAA	2 cut(s)	98, 471
Tru9I	TTAA	2 cut(s)	98, 471
TseFI	GTSAC	2 cut(s)	199, 214
Tsp45I	GTSAC	2 cut(s)	199, 214
TspGWI	ACGGA	4 cut(s)	116, 349, 382, 394
Tth111I	GACNNNGTC	4 cut(s)	7, 10, 271, 359
VpaK11BI	GGWCC	1 cut(s)	66
XapI	RAATTY	2 cut(s)	371, 473
XmiI	GTMKAC	1 cut(s)	222
ZraI	GACGTC	4 cut(s)	9, 214, 270, 466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.