Rmu_ssc0000268.1_g000001

Tyrosine decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000268.1
OG0008766
Physical Location & Seq
Forward (+)
1 .. 4817
4817 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1535 bp
tgttacagtcttcatctccctcatttctaatcttcagacaaaacccagagcatcatcaccacaagatggagggtggattgaagccaatggatgcagagcagctcagagagaatgctcacaagatggtggatttcatagctgattactacaagaccattgaggaattccctgttctcagccaagttcagcctggatatctccgtgaacttctacctgattctgcgcctactcaacccgaatctttgcagcatatttttgatgatattcaggctaagatactaccaggggtgacccactggcagagcccaaacttctttgcttattatccttctaatagcagcattgccggatttttgggagagatgctcagtgctggtcttaacattgtgggttttagttgggtaacttctcctgcagctacagagctcgaaattattgttcttgattggctcgccaaattgattaaacttcccgacgagtttctttcagcaggacaaggtggtggtgtgatacaaggcactgcaagtgaagctgttctggttgtaatcctggctgctcgtgataagattttgagaagggtaggaaaaaatgcccttgagaagcttgttgtttatgcatctgatcaaacacattcagctttgcagaaagcctgtcagatagcgggaatccatcctgagaattgcaggacgctgagtaccgactcaactactaattatgctctgtcgcccagtgtacttaatgaagcaatttcaaatgacatcaccagtggtttaattccttttttcttatgtggaacagttggtaccacttcttcaacagcggttgatcctttgggagaactgggaaagattgctaagagcaacgaaatgtggttccatgtggatgctgcatatgctggtagtgcctgtatatgtccagaataccgccactacattgatggtgttgagaaagcagactcatttaacatgaatgcacacaaatggtttctcacaaactttgattgttcggtgctttggatcaaggatagaaatgctttggtccaggccctgtctacaaatcctgagttcctgaaaaacaagtcatctgaagcaaacatggttgtggattacaaagattggcaagttccacttggacgtcggtttagatcattgaagctatggatggtgttacgactttatggtttggagaacctccagtcctacataagaaaccatatcaatttggccaaaaaatttgaagagcttgttgctcaagaccctaggtttgagattgttactccaagactttattcgttagtttgtttccgccttctgccccctcatggaaatgaggcctgtgcgagcaaagtgaaccatgacttattagatgctgtaaattcaacagggaagattttcatttctcacacggtcctgtctggtacatacatattacgttttgcagtaggagctccattgactgaggagaagcatgtgaatgcagcatggaaggttttgcaagatgaggcctctgcactgctagcaacctctttaggatga

Protein Analysis

510

Amino Acids

56.56

Weight (kDa)

5.95

Isoelectric Point (pI)

46.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyridoxal_deC PF00282 63 - 436 8.5e-125 Pyridoxal-dependent decarboxylase conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1137
Acc65I GGTACC 1 cut(s) 802
AccB1I GGYRCC 1 cut(s) 802
AccB7I CCANNNNNTGG 1 cut(s) 66
AccI GTMKAC 1 cut(s) 1051
AciI CCGC 4 cut(s) 661, 820, 924, 1305
AclWI GGATC 2 cut(s) 820, 1024
AcoI YGGCCR 1 cut(s) 1223
AcsI RAATTY 3 cut(s) 163, 1231, 1374
AcuI CTGAAG 2 cut(s) 18, 1106
AcyI GRCGYC 1 cut(s) 1134
AfaI GTAC 4 cut(s) 696, 734, 804, 1419
AfiI CCNNNNNNNGG 2 cut(s) 66, 1321
AgsI TTSAA 6 cut(s) 81, 752, 815, 1152, 1237, 1379
AjnI CCWGG 4 cut(s) 189, 282, 548, 1040
AjuI GAANNNNNNNTTGG 2 cut(s) 1272, 1304
AloI GAACNNNNNNTCC 2 cut(s) 1180, 1212
Alw21I GWGCWC 2 cut(s) 428, 1449
AlwI GGATC 2 cut(s) 820, 1024
AlwNI CAGNNNCTG 1 cut(s) 1047
AoxI GGCC 4 cut(s) 1043, 1223, 1331, 1502
ApeKI GCWGC 7 cut(s) 99, 246, 338, 415, 553, 886, 1477
ApoI RAATTY 3 cut(s) 163, 1231, 1374
ArsI GACNNNNNNTTYG 2 cut(s) 1246, 1278
Asp700I GAANNNNTTC 2 cut(s) 533, 1390
Asp718I GGTACC 1 cut(s) 802
AspA2I CCTAGG 1 cut(s) 1258
AspLEI GCGC 1 cut(s) 225
AspS9I GGNCC 3 cut(s) 1038, 1044, 1407
AsuHPI GGTGA 3 cut(s) 49, 300, 753
AsuNHI GCTAGC 1 cut(s) 1515
AvaII GGWCC 2 cut(s) 1038, 1407
AvrII CCTAGG 1 cut(s) 1258
BalI TGGCCA 1 cut(s) 1225
BanI GGYRCC 1 cut(s) 802
BanII GRGCYC 3 cut(s) 307, 428, 1449
BarI GAAGNNNNNNTAC 2 cut(s) 795, 827
BauI CACGAG 1 cut(s) 557
BbsI GAAGAC 1 cut(s) 2
Bbv12I GWGCWC 2 cut(s) 428, 1449
BbvI GCAGC 7 cut(s) 111, 258, 350, 427, 540, 873, 1489
BccI CCATC 5 cut(s) 60, 117, 677, 931, 1155
BciT130I CCWGG 4 cut(s) 191, 284, 550, 1042
BclI TGATCA 1 cut(s) 621
BfaI CTAG 2 cut(s) 1259, 1516
BfmI CTRYAG 2 cut(s) 413, 419
BisI GCNGC 7 cut(s) 100, 247, 339, 416, 554, 887, 1478
BlnI CCTAGG 1 cut(s) 1258
BlsI GCNGC 7 cut(s) 101, 248, 340, 417, 555, 888, 1479
Bme1390I CCNGG 4 cut(s) 191, 284, 550, 1042
Bme18I GGWCC 2 cut(s) 1038, 1407
BmgT120I GGNCC 3 cut(s) 1038, 1044, 1407
BmiI GGNNCC 2 cut(s) 804, 874
BmrFI CCNGG 4 cut(s) 191, 284, 550, 1042
BmrI ACTGGG 2 cut(s) 722, 850
BmsI GCATC 6 cut(s) 60, 81, 353, 625, 873, 1356
BmtI GCTAGC 1 cut(s) 1519
BmuI ACTGGG 2 cut(s) 722, 850
BpiI GAAGAC 1 cut(s) 2
BplI GAGNNNNNCTC 2 cut(s) 350, 382
BpmI CTGGAG 1 cut(s) 1177
BpuEI CTTGAG 2 cut(s) 616, 1235
BsaHI GRCGYC 1 cut(s) 1134
BsaJI CCNNGG 2 cut(s) 283, 1258
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 1321
Bse1I ACTGG 5 cut(s) 301, 728, 764, 845, 1194
Bse3DI GCAATG 1 cut(s) 341
BseBI CCWGG 4 cut(s) 191, 284, 550, 1042
BseDI CCNNGG 2 cut(s) 283, 1258
BseGI GGATG 4 cut(s) 96, 669, 888, 1166
BseLI CCNNNNNNNGG 2 cut(s) 66, 1321
BseMI GCAATG 1 cut(s) 341
BseMII CTCAG 7 cut(s) 117, 189, 381, 665, 682, 1052, 1448
BseNI ACTGG 5 cut(s) 301, 728, 764, 845, 1194
BseRI GAGGAG 1 cut(s) 1474
BseXI GCAGC 7 cut(s) 111, 258, 350, 427, 540, 873, 1489
BsgI GTGCAG 1 cut(s) 1493
BshFI GGCC 4 cut(s) 1045, 1225, 1333, 1504
BshNI GGYRCC 1 cut(s) 802
BsiHKAI GWGCWC 2 cut(s) 428, 1449
BsiSI CCGG 1 cut(s) 347
BslI CCNNNNNNNGG 2 cut(s) 66, 1321
BsmI GAATGC 3 cut(s) 117, 975, 1479
BsnI GGCC 4 cut(s) 1045, 1225, 1333, 1504
Bsp1286I GDGCHC 3 cut(s) 307, 428, 1449
Bsp143I GATC 4 cut(s) 621, 825, 1016, 1144
BspACI CCGC 4 cut(s) 661, 820, 924, 1305
BspANI GGCC 4 cut(s) 1045, 1225, 1333, 1504
BspCNI CTCAG 7 cut(s) 116, 188, 380, 666, 683, 1053, 1449
BspLI GGNNCC 2 cut(s) 804, 874
BspMAI CTGCAG 1 cut(s) 417
BspOI GCTAGC 1 cut(s) 1519
BspPI GGATC 2 cut(s) 820, 1024
BspQI GCTCTTC 1 cut(s) 1232
BspT107I GGYRCC 1 cut(s) 802
BsrDI GCAATG 1 cut(s) 341
BsrI ACTGG 5 cut(s) 301, 728, 764, 845, 1194
BssECI CCNNGG 2 cut(s) 283, 1258
BssMI GATC 4 cut(s) 621, 825, 1016, 1144
BssNI GRCGYC 1 cut(s) 1134
BssSI CACGAG 1 cut(s) 557
BssT1I CCWWGG 1 cut(s) 1258
Bst2BI CACGAG 1 cut(s) 557
Bst2UI CCWGG 4 cut(s) 191, 284, 550, 1042
Bst4CI ACNGT 3 cut(s) 8, 798, 1407
Bst6I CTCTTC 1 cut(s) 1232
BstACI GRCGYC 1 cut(s) 1134
BstC8I GCNNGC 3 cut(s) 452, 1341, 1517
BstDEI CTNAG 9 cut(s) 103, 175, 272, 367, 674, 691, 854, 1061, 1457
BstEII GGTNACC 1 cut(s) 288
BstF5I GGATG 4 cut(s) 96, 669, 888, 1166
BstHHI GCGC 1 cut(s) 225
BstKTI GATC 4 cut(s) 624, 828, 1019, 1147
BstMBI GATC 4 cut(s) 621, 825, 1016, 1144
BstMWI GCNNNNNNNGC 5 cut(s) 529, 892, 901, 1444, 1516
BstNI CCWGG 4 cut(s) 191, 284, 550, 1042
BstNSI RCATGY 1 cut(s) 1471
BstPI GGTNACC 1 cut(s) 288
BstSCI CCNGG 4 cut(s) 189, 282, 548, 1040
BstSFI CTRYAG 2 cut(s) 413, 419
BstV1I GCAGC 7 cut(s) 111, 258, 350, 427, 540, 873, 1489
BstV2I GAAGAC 1 cut(s) 2
BsuRI GGCC 4 cut(s) 1045, 1225, 1333, 1504
BtsCI GGATG 4 cut(s) 96, 669, 888, 1166
BtsI GCAGTG 2 cut(s) 518, 1510
BtsIMutI CAGTG 6 cut(s) 294, 375, 518, 735, 771, 1510
Cac8I GCNNGC 3 cut(s) 452, 1341, 1517
CaiI CAGNNNCTG 1 cut(s) 1047
CfoI GCGC 1 cut(s) 225
Cfr13I GGNCC 3 cut(s) 1038, 1044, 1407
CseI GACGC 1 cut(s) 696
Csp6I GTAC 4 cut(s) 695, 733, 803, 1418
CviAII CATG 7 cut(s) 877, 966, 1095, 1321, 1354, 1468, 1481
CviQI GTAC 4 cut(s) 695, 733, 803, 1418
DdeI CTNAG 9 cut(s) 103, 175, 272, 367, 674, 691, 854, 1061, 1457
DpnI GATC 4 cut(s) 623, 827, 1018, 1146
DpnII GATC 4 cut(s) 621, 825, 1016, 1144
EaeI YGGCCR 1 cut(s) 1223
Eam1104I CTCTTC 1 cut(s) 1232
EarI CTCTTC 1 cut(s) 1232
EciI GGCGGA 1 cut(s) 1294
Ecl136II GAGCTC 2 cut(s) 426, 1447
Eco130I CCWWGG 1 cut(s) 1258
Eco147I AGGCCT 2 cut(s) 1333, 1504
Eco24I GRGCYC 3 cut(s) 307, 428, 1449
Eco32I GATATC 1 cut(s) 196
Eco47I GGWCC 2 cut(s) 1038, 1407
Eco53kI GAGCTC 2 cut(s) 426, 1447
Eco57I CTGAAG 2 cut(s) 18, 1106
Eco91I GGTNACC 1 cut(s) 288
EcoICRI GAGCTC 2 cut(s) 426, 1447
EcoO109I RGGNCCY 1 cut(s) 1044
EcoO65I GGTNACC 1 cut(s) 288
EcoRI GAATTC 1 cut(s) 163
EcoRII CCWGG 4 cut(s) 189, 282, 548, 1040
EcoRV GATATC 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 1258
EcoT22I ATGCAT 1 cut(s) 618
EcoT38I GRGCYC 3 cut(s) 307, 428, 1449
ErhI CCWWGG 1 cut(s) 1258
FaeI CATG 7 cut(s) 880, 969, 1098, 1324, 1357, 1471, 1484
FalI AAGNNNNNCTT 2 cut(s) 1112, 1144
FatI CATG 7 cut(s) 876, 965, 1094, 1320, 1353, 1467, 1480
FauI CCCGC 1 cut(s) 654
FauNDI CATATG 1 cut(s) 891
FbaI TGATCA 1 cut(s) 621
FblI GTMKAC 1 cut(s) 1051
Fnu4HI GCNGC 7 cut(s) 100, 247, 339, 416, 554, 887, 1478
FokI GGATG 4 cut(s) 103, 656, 895, 1173
FriOI GRGCYC 3 cut(s) 307, 428, 1449
Fsp4HI GCNGC 7 cut(s) 100, 247, 339, 416, 554, 887, 1478
FspBI CTAG 2 cut(s) 1259, 1516
GlaI GCGC 1 cut(s) 224
GluI GCNGC 7 cut(s) 100, 247, 339, 416, 554, 887, 1478
GsuI CTGGAG 1 cut(s) 1177
HaeIII GGCC 4 cut(s) 1045, 1225, 1333, 1504
HapII CCGG 1 cut(s) 347
HgaI GACGC 1 cut(s) 696
HhaI GCGC 1 cut(s) 225
Hin1I GRCGYC 1 cut(s) 1134
Hin1II CATG 7 cut(s) 880, 969, 1098, 1324, 1357, 1471, 1484
Hin6I GCGC 1 cut(s) 223
HinP1I GCGC 1 cut(s) 223
HindIII AAGCTT 1 cut(s) 601
HinfI GANTC 5 cut(s) 217, 238, 665, 700, 955
HpaII CCGG 1 cut(s) 347
HphI GGTGA 3 cut(s) 49, 300, 753
Hpy166II GTNNAC 4 cut(s) 205, 733, 1052, 1350
Hpy188I TCNGA 5 cut(s) 37, 106, 621, 656, 1086
Hpy188III TCNNGA 8 cut(s) 442, 472, 559, 673, 916, 1060, 1068, 1252
Hpy8I GTNNAC 4 cut(s) 205, 733, 1052, 1350
Hpy99I CGWCG 2 cut(s) 478, 1139
HpyAV CCTTC 4 cut(s) 338, 569, 1318, 1479
HpyCH4III ACNGT 3 cut(s) 8, 798, 1407
HpyCH4IV ACGT 2 cut(s) 1134, 1431
HpyF10VI GCNNNNNNNGC 5 cut(s) 529, 892, 901, 1444, 1516
HpyF3I CTNAG 9 cut(s) 103, 175, 272, 367, 674, 691, 854, 1061, 1457
HpySE526I ACGT 2 cut(s) 1134, 1431
Hsp92I GRCGYC 1 cut(s) 1134
Hsp92II CATG 7 cut(s) 880, 969, 1098, 1324, 1357, 1471, 1484
HspAI GCGC 1 cut(s) 223
KpnI GGTACC 1 cut(s) 806
Ksp22I TGATCA 1 cut(s) 621
Kzo9I GATC 4 cut(s) 621, 825, 1016, 1144
LguI GCTCTTC 1 cut(s) 1232
LmnI GCTCC 2 cut(s) 1444, 1452
Lsp1109I GCAGC 7 cut(s) 111, 258, 350, 427, 540, 873, 1489
LweI GCATC 6 cut(s) 60, 81, 353, 625, 873, 1356
MaeI CTAG 2 cut(s) 1259, 1516
MaeII ACGT 2 cut(s) 1134, 1431
MaeIII GTNAC 5 cut(s) 2, 288, 402, 1166, 1272
MalI GATC 4 cut(s) 623, 827, 1018, 1146
MboI GATC 4 cut(s) 621, 825, 1016, 1144
MboII GAAGA 4 cut(s) 24, 803, 1249, 1398
MhlI GDGCHC 3 cut(s) 307, 428, 1449
MlsI TGGCCA 1 cut(s) 1225
MluNI TGGCCA 1 cut(s) 1225
MlyI GAGTC 2 cut(s) 694, 949
Mox20I TGGCCA 1 cut(s) 1225
Mph1103I ATGCAT 1 cut(s) 618
MroXI GAANNNNTTC 2 cut(s) 533, 1390
MscI TGGCCA 1 cut(s) 1225
MseI TTAA 5 cut(s) 380, 464, 737, 772, 962
MslI CAYNNNNRTG 5 cut(s) 881, 978, 1099, 1325, 1472
Msp20I TGGCCA 1 cut(s) 1225
MspA1I CMGCKG 1 cut(s) 820
MspI CCGG 1 cut(s) 347
MspR9I CCNGG 4 cut(s) 191, 284, 550, 1042
Mva1269I GAATGC 3 cut(s) 117, 975, 1479
MvaI CCWGG 4 cut(s) 191, 284, 550, 1042
MwoI GCNNNNNNNGC 5 cut(s) 529, 892, 901, 1444, 1516
NdeI CATATG 1 cut(s) 891
NdeII GATC 4 cut(s) 621, 825, 1016, 1144
NheI GCTAGC 1 cut(s) 1515
NlaIII CATG 7 cut(s) 880, 969, 1098, 1324, 1357, 1471, 1484
NlaIV GGNNCC 2 cut(s) 804, 874
NmuCI GTSAC 1 cut(s) 288
NsiI ATGCAT 1 cut(s) 618
NspI RCATGY 1 cut(s) 1471
PceI AGGCCT 2 cut(s) 1333, 1504
PciSI GCTCTTC 1 cut(s) 1232
PctI GAATGC 3 cut(s) 117, 975, 1479
PdmI GAANNNNTTC 2 cut(s) 533, 1390
PfeI GAWTC 3 cut(s) 217, 238, 665
PflMI CCANNNNNTGG 1 cut(s) 66
PkrI GCNGC 7 cut(s) 101, 248, 340, 417, 555, 888, 1479
PleI GAGTC 2 cut(s) 694, 949
PpsI GAGTC 2 cut(s) 694, 949
Psp124BI GAGCTC 2 cut(s) 428, 1449
Psp6I CCWGG 4 cut(s) 189, 282, 548, 1040
PspEI GGTNACC 1 cut(s) 288
PspGI CCWGG 4 cut(s) 189, 282, 548, 1040
PspN4I GGNNCC 2 cut(s) 804, 874
PspPI GGNCC 3 cut(s) 1038, 1044, 1407
PsrI GAACNNNNNNTAC 2 cut(s) 786, 818
PstI CTGCAG 1 cut(s) 417
PstNI CAGNNNCTG 1 cut(s) 1047
RsaI GTAC 4 cut(s) 696, 734, 804, 1419
RsaNI GTAC 4 cut(s) 695, 733, 803, 1418
RseI CAYNNNNRTG 5 cut(s) 881, 978, 1099, 1325, 1472
SacI GAGCTC 2 cut(s) 428, 1449
SapI GCTCTTC 1 cut(s) 1232
SaqAI TTAA 5 cut(s) 380, 464, 737, 772, 962
SatI GCNGC 7 cut(s) 100, 247, 339, 416, 554, 887, 1478
Sau3AI GATC 4 cut(s) 621, 825, 1016, 1144
Sau96I GGNCC 3 cut(s) 1038, 1044, 1407
SchI GAGTC 2 cut(s) 694, 949
ScrFI CCNGG 4 cut(s) 191, 284, 550, 1042
SduI GDGCHC 3 cut(s) 307, 428, 1449
SfaNI GCATC 6 cut(s) 60, 81, 353, 625, 873, 1356
SfcI CTRYAG 2 cut(s) 413, 419
SinI GGWCC 2 cut(s) 1038, 1407
SmiMI CAYNNNNRTG 5 cut(s) 881, 978, 1099, 1325, 1472
SmlI CTYRAG 2 cut(s) 595, 1250
SmoI CTYRAG 2 cut(s) 595, 1250
SseBI AGGCCT 2 cut(s) 1333, 1504
SsiI CCGC 4 cut(s) 661, 820, 924, 1305
SspMI CTAG 2 cut(s) 1259, 1516
SstI GAGCTC 2 cut(s) 428, 1449
StuI AGGCCT 2 cut(s) 1333, 1504
StyD4I CCNGG 4 cut(s) 189, 282, 548, 1040
StyI CCWWGG 1 cut(s) 1258
TaaI ACNGT 3 cut(s) 8, 798, 1407
TaiI ACGT 2 cut(s) 1137, 1434
TaqI TCGA 1 cut(s) 428
TatI WGTACW 1 cut(s) 732
TfiI GAWTC 3 cut(s) 217, 238, 665
Tru1I TTAA 5 cut(s) 380, 464, 737, 772, 962
Tru9I TTAA 5 cut(s) 380, 464, 737, 772, 962
TscAI CASTG 6 cut(s) 301, 375, 525, 735, 771, 1517
TseFI GTSAC 1 cut(s) 288
TseI GCWGC 7 cut(s) 99, 246, 338, 415, 553, 886, 1477
Tsp45I GTSAC 1 cut(s) 288
TspDTI ATGAA 4 cut(s) 123, 755, 982, 1383
TspGWI ACGGA 1 cut(s) 190
TspRI CASTG 6 cut(s) 301, 375, 525, 735, 771, 1517
Van91I CCANNNNNTGG 1 cut(s) 66
VpaK11BI GGWCC 2 cut(s) 1038, 1407
XapI RAATTY 3 cut(s) 163, 1231, 1374
XceI RCATGY 1 cut(s) 1471
XcmI CCANNNNNNNNNTGG 2 cut(s) 187, 934
XmaJI CCTAGG 1 cut(s) 1258
XmiI GTMKAC 1 cut(s) 1051
XmnI GAANNNNTTC 2 cut(s) 533, 1390
XspI CTAG 2 cut(s) 1259, 1516
ZraI GACGTC 1 cut(s) 1135
Zsp2I ATGCAT 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.