Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000289.1

Orthogroup ID

OG0014481

Physical Location & Seq

Genomic Coordinates Forward (+)

58823 .. 67929

Gene Structure 9107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000289.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2358 bp

atggaaggtggatccgatagagacaaatcgaactcctcgtcgtctcccattcccgtcgtctccaatttctggaaagagtttgatttggagaaggaaaaaagtgtactggatgagcaagggcttaggatagctgagaatcaggaaaacagccagaaaaataggcggaagcttgcagagagcacaagagatttcaagaaagcttcaccggaggaaaagctaaatctcttcaattctttacttaagggttaccaagaagaagttgataatcttaccaagagagcaaaattcggagagaatgcttttcttaacatctatcaaaagctttatgaggctccagatccgtatcttgcacttgcttcaattgctgagcaagatcttaaattgtctgagctagaatctgagaataggaagatgaaagttgagcttgaggagttcaggacagaagcaactcatctaaagaatcagcaggcaacaataagaagacttgaagagcgcaaccgtcagttagagcaacagatggaggataaagttaaagaaattgtggagataaagcaacggagttttgcagaagagaaccagaaagtacttgaggtcctgacagagagagagcaaatgttgcaggatcaattacgacaagctaaagacagtgttttcaatatgcagaaattacatgagcttgctcaaagccaattgtttgaggttcgtgcacaatcagaggaagagaaggcaacgaagcaatctgaggtcaatcttctgatggatgaagttgaacgggctcagacacggcttcttagtcttgagatggagaagggacatttgcggtccaagttacagtcagctaatgaagaaactgacaataagaaaagtgataatttagattcaaatagcatccttgagaattctttaagtgccaaagagaagatcatagctgaactcaacatggaacttcacaatattgaaaccaccttatcaaatgaaagagaggagcacatgaatgagatcaagaaggtgaatgcacagctcattgaaaaggaagcttctcttgaggagatgaagaaagagcttcaagcaaggccaacaacaaaactggttgatgatttgcgtaaaaaggtgaagattttgcagggacatttgcggtccaagttacagtcagctaatgaagaaactgacaataagaaaagtgataatttagattcaactagcatccttgagaattctttaagtgccaaagagaagatcatagctgaactcaacatggaacttcacaatattgaaaccaccttatcaaatgaaagagaggagcacatgaatgagatcaagaagttgaatgcacagctcattgaaaaggaagcttctcttgaggagatgaagaaagagcttcaagcaaggccaacaacaaaactggttgatgatttgcgtaaaaaggtgaagattttgcaggcagtgggttataattcaattgaggctgaagattgggaagttgctacaagtggggaagagatgagcaaaatggagtctcttcttcttgacaagaatcggaaaatggaacaccaactcacacaattgaaggtgcaactttcagaaaaatcatctctgttggaaaaggctgatggagaaataacagaacttgcagaaaaggttaatgaacaaaaaaaattaatacagaagttggaggatgatatactgaagggatatagctccaaggagaaaaaaggaaatttatttgatgactgggatctatcagaggctaggagcacagaactatcagagaatgcagaacaaaagcatgtttcctcggaccaagaccaaagctcaatgcttaaggttatctgcaatcagcgagatcgattcagggcacgcttgagagagacagaagaagaaattagacagttgaaggaaaagataggagctctaacagtggaactggaaaggacaaaagcagataatgtcaagctgtatggaaagattcgctatgttcaggactacagtcttgaaaaagtagtgtctagaggatcaaagaagcaagcagaggatcttgaaagtggtttctcctcagatgttgaatctaagtacaagaagatctatgaggatgatataaatccttttgcagcattctcgaaaaaggaaagggatcaaaggtacaaggaattgggtttcagggacagaattactcttagcagtggacgttttcttcttggcaacaagtatgctcggacttttgcatttttctacaccattgggttgcatatactggtattcacttgtctctaccgaatgtcagctctgagttatctcagcaatggtcaggaggatatccttgtcggggacacaactcagaatctcccacacggtctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0016021 GO:0016192 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048193 GO:0051179 GO:0051234 GO:0097708 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CASP_C

Protein Analysis

785

Amino Acids

90.96

Weight (kDa)

5.38

Isoelectric Point (pI)

49.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18480
fragaria_vesca	FvH4_5g12492 FvH4_5g12492 FvH4_5g12492
malus_domestica	MD10G1081900.v1.1
prunus_persica	Prupe.8G104400_v2.0.a1
pyrus_communis	pycom05g06100
rosa_chinensis	RchiOBHm_Chr7g0184861
rosa_laevigata	RLG00000004948
rosa_multiflora	Rmu_ssc0000289.1_g000012
rosa_roxburghii	Rroxscaffold_3G00269320
rosa_rugosa	Rorug06G0465500
rosa_samantha	Rh7AG077400 Rh7BG069900 Rh7CG070700 Rh7DG070100
rosa_wichuraiana	Rw7G005800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1452
AccB7I	CCANNNNNTGG	1 cut(s)	69
AciI	CCGC	3 cut(s)	163, 820, 1135
AclWI	GGATC	8 cut(s)	6, 19, 332, 630, 1743, 2020, 2040, 2139
AcsI	RAATTY	4 cut(s)	284, 898, 1213, 1717
AcuI	CTGAAG	2 cut(s)	1488, 1706
AfaI	GTAC	4 cut(s)	105, 585, 2072, 2141
AfiI	CCNNNNNNNGG	2 cut(s)	69, 2323
AflII	CTTAAG	2 cut(s)	239, 1820
Alw21I	GWGCWC	6 cut(s)	182, 709, 990, 1305, 1757, 1912
Alw26I	GTCTC	6 cut(s)	15, 48, 64, 1521, 1862, 2270
Alw44I	GTGCAC	1 cut(s)	705
AlwI	GGATC	8 cut(s)	6, 19, 332, 630, 1743, 2020, 2040, 2139
AoxI	GGCC	2 cut(s)	1073, 1388
ApaLI	GTGCAC	1 cut(s)	705
ApeKI	GCWGC	1 cut(s)	2108
ApoI	RAATTY	4 cut(s)	284, 898, 1213, 1717
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
AseI	ATTAAT	1 cut(s)	1658
AspLEI	GCGC	1 cut(s)	495
AspS9I	GGNCC	4 cut(s)	592, 822, 1137, 1798
AsuHPI	GGTGA	4 cut(s)	195, 1021, 1123, 1438
AvaII	GGWCC	4 cut(s)	592, 822, 1137, 1798
BaeGI	GKGCMC	2 cut(s)	709, 1858
BamHI	GGATCC	1 cut(s)	11
BanII	GRGCYC	2 cut(s)	778, 1912
BbsI	GAAGAC	1 cut(s)	487
Bbv12I	GWGCWC	6 cut(s)	182, 709, 990, 1305, 1757, 1912
BbvI	GCAGC	1 cut(s)	2120
BccI	CCATC	4 cut(s)	511, 751, 796, 1604
BceAI	ACGGC	1 cut(s)	800
BcgI	CGANNNNNNTGC	2 cut(s)	2097, 2131
BcoDI	GTCTC	6 cut(s)	15, 48, 64, 1521, 1862, 2270
BfaI	CTAG	5 cut(s)	392, 1200, 1749, 2007, 2356
BfmI	CTRYAG	1 cut(s)	1984
BfrI	CTTAAG	2 cut(s)	239, 1820
BglII	AGATCT	2 cut(s)	373, 2079
BisI	GCNGC	1 cut(s)	2109
BlpI	GCTNAGC	1 cut(s)	366
BlsI	GCNGC	1 cut(s)	2110
BmcAI	AGTACT	1 cut(s)	585
Bme18I	GGWCC	4 cut(s)	592, 822, 1137, 1798
BmgT120I	GGNCC	4 cut(s)	592, 822, 1137, 1798
BmiI	GGNNCC	2 cut(s)	13, 333
BmrI	ACTGGG	1 cut(s)	1741
BmsI	GCATC	2 cut(s)	897, 1212
BmuI	ACTGGG	1 cut(s)	1741
BoxI	GACNNNNGTC	1 cut(s)	1986
BpiI	GAAGAC	1 cut(s)	487
BpmI	CTGGAG	1 cut(s)	318
Bpu10I	CCTNAGC	1 cut(s)	122
Bpu1102I	GCTNAGC	1 cut(s)	366
BpuEI	CTTGAG	8 cut(s)	446, 608, 818, 914, 1064, 1229, 1379, 1882
Bsa29I	ATCGAT	1 cut(s)	1846
BsaBI	GATNNNNATC	2 cut(s)	342, 2097
BsaJI	CCNNGG	2 cut(s)	1701, 1794
BsaWI	WCCGGW	1 cut(s)	205
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 2323
Bse1I	ACTGG	6 cut(s)	111, 1092, 1407, 1736, 1929, 2256
Bse3DI	GCAATG	1 cut(s)	2305
Bse8I	GATNNNNATC	2 cut(s)	342, 2097
BseCI	ATCGAT	1 cut(s)	1846
BseDI	CCNNGG	2 cut(s)	1701, 1794
BseGI	GGATG	6 cut(s)	115, 766, 888, 1203, 1681, 2095
BseJI	GATNNNNATC	2 cut(s)	342, 2097
BseLI	CCNNNNNNNGG	2 cut(s)	69, 2323
BseMI	GCAATG	1 cut(s)	2305
BseNI	ACTGG	6 cut(s)	111, 1092, 1407, 1736, 1929, 2256
BseRI	GAGGAG	7 cut(s)	25, 443, 998, 1061, 1313, 1376, 2041
BseSI	GKGCMC	2 cut(s)	709, 1858
BseXI	GCAGC	1 cut(s)	2120
BshFI	GGCC	2 cut(s)	1075, 1390
BshVI	ATCGAT	1 cut(s)	1846
BsiHKAI	GWGCWC	6 cut(s)	182, 709, 990, 1305, 1757, 1912
BsiSI	CCGG	1 cut(s)	206
BslFI	GGGAC	4 cut(s)	825, 1140, 2174, 2339
BslI	CCNNNNNNNGG	2 cut(s)	69, 2323
BsmAI	GTCTC	6 cut(s)	15, 48, 64, 1521, 1862, 2270
BsmBI	CGTCTC	2 cut(s)	48, 64
BsmFI	GGGAC	4 cut(s)	825, 1140, 2174, 2339
BsmI	GAATGC	5 cut(s)	301, 1018, 1333, 1777, 2111
BsnI	GGCC	2 cut(s)	1075, 1390
Bsp1286I	GDGCHC	8 cut(s)	182, 709, 778, 990, 1305, 1757, 1858, 1912
Bsp1720I	GCTNAGC	1 cut(s)	366
BspACI	CCGC	3 cut(s)	163, 820, 1135
BspANI	GGCC	2 cut(s)	1075, 1390
BspDI	ATCGAT	1 cut(s)	1846
BspLI	GGNNCC	2 cut(s)	13, 333
BspPI	GGATC	8 cut(s)	6, 19, 332, 630, 1743, 2020, 2040, 2139
BspQI	GCTCTTC	1 cut(s)	483
BspTI	CTTAAG	2 cut(s)	239, 1820
BsrDI	GCAATG	1 cut(s)	2305
BsrI	ACTGG	6 cut(s)	111, 1092, 1407, 1736, 1929, 2256
BssECI	CCNNGG	2 cut(s)	1701, 1794
BssT1I	CCWWGG	1 cut(s)	1701
Bst4CI	ACNGT	8 cut(s)	500, 647, 834, 1149, 1890, 1918, 1988, 2351
Bst6I	CTCTTC	6 cut(s)	230, 483, 564, 714, 1491, 1524
BstAFI	CTTAAG	2 cut(s)	239, 1820
BstAPI	GCANNNNNTGC	1 cut(s)	616
BstC8I	GCNNGC	6 cut(s)	171, 468, 678, 1440, 1858, 2025
BstEII	GGTNACC	1 cut(s)	245
BstF5I	GGATG	6 cut(s)	115, 766, 888, 1203, 1681, 2095
BstHHI	GCGC	1 cut(s)	495
BstMAI	GTCTC	6 cut(s)	15, 48, 64, 1521, 1862, 2270
BstMWI	GCNNNNNNNGC	2 cut(s)	362, 616
BstNSI	RCATGY	1 cut(s)	1790
BstPAI	GACNNNNGTC	1 cut(s)	1986
BstPI	GGTNACC	1 cut(s)	245
BstSFI	CTRYAG	1 cut(s)	1984
BstSLI	GKGCMC	2 cut(s)	709, 1858
BstV1I	GCAGC	1 cut(s)	2120
BstV2I	GAAGAC	1 cut(s)	487
BstX2I	RGATCY	6 cut(s)	11, 337, 373, 1735, 2032, 2079
BstYI	RGATCY	6 cut(s)	11, 337, 373, 1735, 2032, 2079
Bsu15I	ATCGAT	1 cut(s)	1846
BsuRI	GGCC	2 cut(s)	1075, 1390
BsuTUI	ATCGAT	1 cut(s)	1846
BtsCI	GGATG	6 cut(s)	115, 766, 888, 1203, 1681, 2095
BtsI	GCAGTG	2 cut(s)	1449, 2185
BtsIMutI	CAGTG	4 cut(s)	652, 1449, 1923, 2185
Cac8I	GCNNGC	6 cut(s)	171, 468, 678, 1440, 1858, 2025
CfoI	GCGC	1 cut(s)	495
Cfr13I	GGNCC	4 cut(s)	592, 822, 1137, 1798
ClaI	ATCGAT	1 cut(s)	1846
Csp6I	GTAC	4 cut(s)	104, 584, 2071, 2140
CviAII	CATG	6 cut(s)	671, 940, 991, 1255, 1306, 1787
CviQI	GTAC	4 cut(s)	104, 584, 2071, 2140
Eam1104I	CTCTTC	6 cut(s)	230, 483, 564, 714, 1491, 1524
EarI	CTCTTC	6 cut(s)	230, 483, 564, 714, 1491, 1524
EciI	GGCGGA	1 cut(s)	178
Ecl136II	GAGCTC	1 cut(s)	1910
Eco130I	CCWWGG	1 cut(s)	1701
Eco24I	GRGCYC	2 cut(s)	778, 1912
Eco32I	GATATC	1 cut(s)	2314
Eco47I	GGWCC	4 cut(s)	592, 822, 1137, 1798
Eco53kI	GAGCTC	1 cut(s)	1910
Eco57I	CTGAAG	2 cut(s)	1488, 1706
Eco91I	GGTNACC	1 cut(s)	245
EcoICRI	GAGCTC	1 cut(s)	1910
EcoO109I	RGGNCCY	1 cut(s)	592
EcoO65I	GGTNACC	1 cut(s)	245
EcoRI	GAATTC	2 cut(s)	898, 1213
EcoRV	GATATC	1 cut(s)	2314
EcoT14I	CCWWGG	1 cut(s)	1701
EcoT38I	GRGCYC	2 cut(s)	778, 1912
ErhI	CCWWGG	1 cut(s)	1701
Esp3I	CGTCTC	2 cut(s)	48, 64
FaeI	CATG	6 cut(s)	674, 943, 994, 1258, 1309, 1790
FalI	AAGNNNNNCTT	6 cut(s)	408, 440, 1026, 1058, 1341, 1373
FaqI	GGGAC	4 cut(s)	825, 1140, 2174, 2339
FatI	CATG	6 cut(s)	670, 939, 990, 1254, 1305, 1786
Fnu4HI	GCNGC	1 cut(s)	2109
FokI	GGATG	6 cut(s)	122, 773, 875, 1190, 1688, 2102
FriOI	GRGCYC	2 cut(s)	778, 1912
Fsp4HI	GCNGC	1 cut(s)	2109
FspBI	CTAG	5 cut(s)	392, 1200, 1749, 2007, 2356
GlaI	GCGC	1 cut(s)	494
GluI	GCNGC	1 cut(s)	2109
GsuI	CTGGAG	1 cut(s)	318
HaeIII	GGCC	2 cut(s)	1075, 1390
HapII	CCGG	1 cut(s)	206
HhaI	GCGC	1 cut(s)	495
Hin1II	CATG	6 cut(s)	674, 943, 994, 1258, 1309, 1790
Hin6I	GCGC	1 cut(s)	493
HinP1I	GCGC	1 cut(s)	493
HindIII	AAGCTT	5 cut(s)	167, 198, 320, 1035, 1350
HpaII	CCGG	1 cut(s)	206
HphI	GGTGA	4 cut(s)	195, 1021, 1123, 1438
Hpy166II	GTNNAC	3 cut(s)	104, 707, 2183
Hpy8I	GTNNAC	3 cut(s)	104, 707, 2183
Hpy99I	CGWCG	2 cut(s)	43, 59
HpyAV	CCTTC	7 cut(s)	85, 718, 802, 1000, 1561, 1681, 1888
HpyCH4III	ACNGT	8 cut(s)	500, 647, 834, 1149, 1890, 1918, 1988, 2351
HpyCH4IV	ACGT	1 cut(s)	2185
HpyF10VI	GCNNNNNNNGC	2 cut(s)	362, 616
HpySE526I	ACGT	1 cut(s)	2185
Hsp92II	CATG	6 cut(s)	674, 943, 994, 1258, 1309, 1790
HspAI	GCGC	1 cut(s)	493
LguI	GCTCTTC	1 cut(s)	483
LmnI	GCTCC	6 cut(s)	337, 985, 1300, 1703, 1752, 1907
Lsp1109I	GCAGC	1 cut(s)	2120
LweI	GCATC	2 cut(s)	897, 1212
MaeI	CTAG	5 cut(s)	392, 1200, 1749, 2007, 2356
MaeII	ACGT	1 cut(s)	2185
MaeIII	GTNAC	3 cut(s)	245, 828, 1143
MfeI	CAATTG	4 cut(s)	360, 689, 1458, 1562
MflI	RGATCY	6 cut(s)	11, 337, 373, 1735, 2032, 2079
MhlI	GDGCHC	8 cut(s)	182, 709, 778, 990, 1305, 1757, 1858, 1912
MlyI	GAGTC	1 cut(s)	1523
MmeI	TCCRAC	2 cut(s)	1578, 1650
MseI	TTAA	9 cut(s)	240, 306, 378, 531, 905, 1220, 1641, 1658, 1821
MslI	CAYNNNNRTG	2 cut(s)	993, 1308
MspCI	CTTAAG	2 cut(s)	239, 1820
MspI	CCGG	1 cut(s)	206
MunI	CAATTG	4 cut(s)	360, 689, 1458, 1562
Mva1269I	GAATGC	5 cut(s)	301, 1018, 1333, 1777, 2111
MwoI	GCNNNNNNNGC	2 cut(s)	362, 616
NlaIII	CATG	6 cut(s)	674, 943, 994, 1258, 1309, 1790
NlaIV	GGNNCC	2 cut(s)	13, 333
NspI	RCATGY	1 cut(s)	1790
PciSI	GCTCTTC	1 cut(s)	483
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PctI	GAATGC	5 cut(s)	301, 1018, 1333, 1777, 2111
PflMI	CCANNNNNTGG	1 cut(s)	69
PkrI	GCNGC	1 cut(s)	2110
PleI	GAGTC	1 cut(s)	1522
PpsI	GAGTC	1 cut(s)	1522
PpuMI	RGGWCCY	1 cut(s)	592
PshAI	GACNNNNGTC	1 cut(s)	1986
PshBI	ATTAAT	1 cut(s)	1658
PsiI	TTATAA	1 cut(s)	1452
Psp124BI	GAGCTC	1 cut(s)	1912
Psp5II	RGGWCCY	1 cut(s)	592
PspEI	GGTNACC	1 cut(s)	245
PspN4I	GGNNCC	2 cut(s)	13, 333
PspPI	GGNCC	4 cut(s)	592, 822, 1137, 1798
PspPPI	RGGWCCY	1 cut(s)	592
PsuI	RGATCY	6 cut(s)	11, 337, 373, 1735, 2032, 2079
RsaI	GTAC	4 cut(s)	105, 585, 2072, 2141
RsaNI	GTAC	4 cut(s)	104, 584, 2071, 2140
RseI	CAYNNNNRTG	2 cut(s)	993, 1308
SacI	GAGCTC	1 cut(s)	1912
SapI	GCTCTTC	1 cut(s)	483
SaqAI	TTAA	9 cut(s)	240, 306, 378, 531, 905, 1220, 1641, 1658, 1821
SatI	GCNGC	1 cut(s)	2109
Sau96I	GGNCC	4 cut(s)	592, 822, 1137, 1798
ScaI	AGTACT	1 cut(s)	585
SchI	GAGTC	1 cut(s)	1523
SduI	GDGCHC	8 cut(s)	182, 709, 778, 990, 1305, 1757, 1858, 1912
SfaNI	GCATC	2 cut(s)	897, 1212
SfcI	CTRYAG	1 cut(s)	1984
SinI	GGWCC	4 cut(s)	592, 822, 1137, 1798
SmiMI	CAYNNNNRTG	2 cut(s)	993, 1308
SsiI	CCGC	3 cut(s)	163, 820, 1135
SspI	AATATT	2 cut(s)	955, 1270
SspMI	CTAG	5 cut(s)	392, 1200, 1749, 2007, 2356
SstI	GAGCTC	1 cut(s)	1912
StyI	CCWWGG	1 cut(s)	1701
TaaI	ACNGT	8 cut(s)	500, 647, 834, 1149, 1890, 1918, 1988, 2351
TaiI	ACGT	1 cut(s)	2188
TaqI	TCGA	3 cut(s)	29, 1846, 2117
TatI	WGTACW	3 cut(s)	103, 583, 2070
Tru1I	TTAA	9 cut(s)	240, 306, 378, 531, 905, 1220, 1641, 1658, 1821
Tru9I	TTAA	9 cut(s)	240, 306, 378, 531, 905, 1220, 1641, 1658, 1821
TscAI	CASTG	4 cut(s)	652, 1449, 1923, 2185
TseI	GCWGC	1 cut(s)	2108
TspGWI	ACGGA	2 cut(s)	330, 571
TspRI	CASTG	4 cut(s)	652, 1449, 1923, 2185
Van91I	CCANNNNNTGG	1 cut(s)	69
Vha464I	CTTAAG	2 cut(s)	239, 1820
VneI	GTGCAC	1 cut(s)	705
VpaK11BI	GGWCC	4 cut(s)	592, 822, 1137, 1798
VspI	ATTAAT	1 cut(s)	1658
XapI	RAATTY	4 cut(s)	284, 898, 1213, 1717
XbaI	TCTAGA	1 cut(s)	2006
XceI	RCATGY	1 cut(s)	1790
XspI	CTAG	5 cut(s)	392, 1200, 1749, 2007, 2356
ZrmI	AGTACT	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.