Rmu_ssc0000434.1_g000019
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000434.1
OG0018157
Physical Location & Seq
Forward (+)
92109 .. 93970
1862 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000434.1_g000019.1.cds

Sequence Viewer

Length: 612 bp
atgggttcctccggtttgatcagagagaactggaggttgatccagcaagccaagtcgttgttcgggtcggatcagcccgacccggaaacaagaccgctcgagttcatcaaccggaacttctccatttttgacatcggcatcattgccggcgtgcaggaagaggatcacagctcgtacaatgacgacaagaaacatgtttttggttctagcaagaagaagaacggagctccgaacccaaacccggactttgcatattccgactgccagatgaaaagagcgccgaagaaacggggccggaaacccgggctgggccgagacatgccgctcaaccacgtggaggcggagcgactgacagtagattttttagtcgctagagaccttgtcggaggtcgccggaaatctgaccagagtagcttttcttttgtgatctcgccggaggacgccttaaatctcaccagagtagcttttattgctagcgacagtagcttttgtattcgactgagttctccggaaattgactggagttcgccggagacctgtctgagttggccagaggtcgaccggagacccgccggagaccttgccggagaggagagagagaatgattgttga

Protein Analysis

203

Amino Acids

22.73

Weight (kDa)

5.5

Isoelectric Point (pI)

49.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018157)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0129501 RchiOBHm_Chr2g0175331
rosa_laevigata RLG00000010884
rosa_multiflora Rmu_ssc0000434.1_g000019
rosa_roxburghii Rroxscaffold_5G00332700
rosa_rugosa Rorug02G0331900
rosa_samantha Rh4AG116200 Rh5AG421800 Rh5BG437500 Rh5CG460200 Rh6BG278000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 97, 325
AccI GTMKAC 1 cut(s) 558
AccIII TCCGGA 1 cut(s) 508
AciI CCGC 4 cut(s) 95, 323, 341, 570
AclWI GGATC 3 cut(s) 34, 78, 171
AcoI YGGCCR 1 cut(s) 548
AcvI CACGTG 1 cut(s) 334
AcyI GRCGYC 1 cut(s) 441
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 3 cut(s) 241, 308, 337
AflIII ACRYGT 1 cut(s) 193
AjuI GAANNNNNNNTTGG 2 cut(s) 44, 76
AluBI AGCT 5 cut(s) 171, 227, 414, 464, 486
AluI AGCT 5 cut(s) 171, 227, 414, 464, 486
Alw21I GWGCWC 1 cut(s) 229
Alw26I GTCTC 5 cut(s) 309, 369, 527, 559, 570
AlwI GGATC 3 cut(s) 34, 78, 171
Ama87I CYCGRG 2 cut(s) 98, 302
Aor13HI TCCGGA 1 cut(s) 508
AoxI GGCC 3 cut(s) 292, 310, 548
AspLEI GCGC 1 cut(s) 280
AspS9I GGNCC 2 cut(s) 292, 310
AsuC2I CCSGG 4 cut(s) 83, 242, 303, 304
AsuHPI GGTGA 1 cut(s) 445
AsuNHI GCTAGC 1 cut(s) 473
AvaI CYCGRG 2 cut(s) 98, 302
BalI TGGCCA 1 cut(s) 550
BanII GRGCYC 1 cut(s) 229
BbrPI CACGTG 1 cut(s) 334
Bbv12I GWGCWC 1 cut(s) 229
BclI TGATCA 1 cut(s) 18
BcnI CCSGG 4 cut(s) 83, 242, 303, 304
BcoDI GTCTC 5 cut(s) 309, 369, 527, 559, 570
BfaI CTAG 3 cut(s) 207, 372, 474
BfoI RGCGCY 1 cut(s) 281
BisI GCNGC 1 cut(s) 323
BlsI GCNGC 1 cut(s) 324
Bme1390I CCNGG 4 cut(s) 83, 242, 303, 304
BmeT110I CYCGRG 2 cut(s) 98, 302
BmgT120I GGNCC 2 cut(s) 292, 310
BmiI GGNNCC 2 cut(s) 7, 293
BmrFI CCNGG 4 cut(s) 83, 242, 303, 304
BmsI GCATC 1 cut(s) 147
BmtI GCTAGC 1 cut(s) 477
BpmI CTGGAG 2 cut(s) 52, 541
BpuMI CCSGG 4 cut(s) 83, 242, 303, 304
BsaAI YACGTR 1 cut(s) 334
BsaHI GRCGYC 1 cut(s) 441
BsaI GGTCTC 4 cut(s) 369, 527, 559, 570
BsaJI CCNNGG 1 cut(s) 302
BsaWI WCCGGW 4 cut(s) 11, 111, 508, 561
Bsc4I CCNNNNNNNGG 3 cut(s) 241, 308, 337
Bse118I RCCGGY 1 cut(s) 146
Bse1I ACTGG 2 cut(s) 35, 524
Bse3DI GCAATG 1 cut(s) 141
BseAI TCCGGA 1 cut(s) 508
BseDI CCNNGG 1 cut(s) 302
BseLI CCNNNNNNNGG 3 cut(s) 241, 308, 337
BseMI GCAATG 1 cut(s) 141
BseMII CTCAG 2 cut(s) 491, 533
BseNI ACTGG 2 cut(s) 35, 524
BseRI GAGGAG 1 cut(s) 605
BseYI CCCAGC 1 cut(s) 307
BsgI GTGCAG 1 cut(s) 173
Bsh1285I CGRYCG 1 cut(s) 562
BshFI GGCC 3 cut(s) 294, 312, 550
BsiEI CGRYCG 1 cut(s) 562
BsiHKAI GWGCWC 1 cut(s) 229
BsiHKCI CYCGRG 2 cut(s) 98, 302
BslI CCNNNNNNNGG 3 cut(s) 241, 308, 337
BsmAI GTCTC 5 cut(s) 309, 369, 527, 559, 570
BsnI GGCC 3 cut(s) 294, 312, 550
Bso31I GGTCTC 4 cut(s) 369, 527, 559, 570
BsoBI CYCGRG 2 cut(s) 98, 302
Bsp1286I GDGCHC 1 cut(s) 229
Bsp13I TCCGGA 1 cut(s) 508
Bsp143I GATC 5 cut(s) 18, 39, 70, 163, 426
BspACI CCGC 4 cut(s) 95, 323, 341, 570
BspANI GGCC 3 cut(s) 294, 312, 550
BspCNI CTCAG 2 cut(s) 492, 534
BspEI TCCGGA 1 cut(s) 508
BspLI GGNNCC 2 cut(s) 7, 293
BspOI GCTAGC 1 cut(s) 477
BspPI GGATC 3 cut(s) 34, 78, 171
BspTNI GGTCTC 4 cut(s) 369, 527, 559, 570
BsrBI CCGCTC 2 cut(s) 97, 325
BsrDI GCAATG 1 cut(s) 141
BsrFI RCCGGY 1 cut(s) 146
BsrI ACTGG 2 cut(s) 35, 524
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 1 cut(s) 302
BssMI GATC 5 cut(s) 18, 39, 70, 163, 426
BssNI GRCGYC 1 cut(s) 441
Bst4CI ACNGT 2 cut(s) 355, 482
Bst6I CTCTTC 1 cut(s) 153
BstACI GRCGYC 1 cut(s) 441
BstBAI YACGTR 1 cut(s) 334
BstC8I GCNNGC 4 cut(s) 48, 148, 152, 475
BstDEI CTNAG 2 cut(s) 500, 542
BstH2I RGCGCY 1 cut(s) 281
BstHHI GCGC 1 cut(s) 280
BstKTI GATC 5 cut(s) 21, 42, 73, 166, 429
BstMAI GTCTC 5 cut(s) 309, 369, 527, 559, 570
BstMBI GATC 5 cut(s) 18, 39, 70, 163, 426
BstMCI CGRYCG 1 cut(s) 562
BstMWI GCNNNNNNNGC 2 cut(s) 470, 483
BstNSI RCATGY 2 cut(s) 197, 322
BstSCI CCNGG 4 cut(s) 81, 240, 301, 302
BsuRI GGCC 3 cut(s) 294, 312, 550
Cac8I GCNNGC 4 cut(s) 48, 148, 152, 475
CfoI GCGC 1 cut(s) 280
Cfr10I RCCGGY 1 cut(s) 146
Cfr13I GGNCC 2 cut(s) 292, 310
Cfr9I CCCGGG 1 cut(s) 302
CseI GACGC 1 cut(s) 449
Csp6I GTAC 1 cut(s) 175
CviAII CATG 2 cut(s) 194, 319
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 2 cut(s) 500, 542
DpnI GATC 5 cut(s) 20, 41, 72, 165, 428
DpnII GATC 5 cut(s) 18, 39, 70, 163, 426
EaeI YGGCCR 1 cut(s) 548
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
EciI GGCGGA 1 cut(s) 356
Ecl136II GAGCTC 1 cut(s) 227
Eco24I GRGCYC 1 cut(s) 229
Eco31I GGTCTC 4 cut(s) 369, 527, 559, 570
Eco53kI GAGCTC 1 cut(s) 227
Eco72I CACGTG 1 cut(s) 334
Eco88I CYCGRG 2 cut(s) 98, 302
EcoICRI GAGCTC 1 cut(s) 227
EcoT38I GRGCYC 1 cut(s) 229
FaeI CATG 2 cut(s) 197, 322
FaiI YATR 3 cut(s) 195, 253, 320
FatI CATG 2 cut(s) 193, 318
FauI CCCGC 1 cut(s) 577
FbaI TGATCA 1 cut(s) 18
FblI GTMKAC 1 cut(s) 558
Fnu4HI GCNGC 1 cut(s) 323
FriOI GRGCYC 1 cut(s) 229
Fsp4HI GCNGC 1 cut(s) 323
FspBI CTAG 3 cut(s) 207, 372, 474
GlaI GCGC 1 cut(s) 279
GluI GCNGC 1 cut(s) 323
GsaI CCCAGC 1 cut(s) 311
GsuI CTGGAG 2 cut(s) 52, 541
HaeII RGCGCY 1 cut(s) 281
HaeIII GGCC 3 cut(s) 294, 312, 550
HgaI GACGC 1 cut(s) 449
HhaI GCGC 1 cut(s) 280
Hin1I GRCGYC 1 cut(s) 441
Hin1II CATG 2 cut(s) 197, 322
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
HincII GTYRAC 1 cut(s) 559
HindII GTYRAC 1 cut(s) 559
HphI GGTGA 1 cut(s) 445
Hpy166II GTNNAC 1 cut(s) 559
Hpy188I TCNGA 7 cut(s) 23, 70, 231, 259, 386, 403, 543
Hpy188III TCNNGA 1 cut(s) 509
Hpy8I GTNNAC 1 cut(s) 559
HpyCH4III ACNGT 2 cut(s) 355, 482
HpyCH4IV ACGT 1 cut(s) 333
HpyCH4V TGCA 2 cut(s) 154, 251
HpyF10VI GCNNNNNNNGC 2 cut(s) 470, 483
HpyF3I CTNAG 2 cut(s) 500, 542
HpySE526I ACGT 1 cut(s) 333
Hsp92I GRCGYC 1 cut(s) 441
Hsp92II CATG 2 cut(s) 197, 322
HspAI GCGC 1 cut(s) 278
Kpn2I TCCGGA 1 cut(s) 508
KroI GCCGGC 1 cut(s) 146
KroNI GCCGGC 1 cut(s) 148
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 5 cut(s) 18, 39, 70, 163, 426
LmnI GCTCC 3 cut(s) 224, 232, 343
LweI GCATC 1 cut(s) 147
MaeI CTAG 3 cut(s) 207, 372, 474
MaeII ACGT 1 cut(s) 333
MalI GATC 5 cut(s) 20, 41, 72, 165, 428
MbiI CCGCTC 2 cut(s) 97, 325
MboI GATC 5 cut(s) 18, 39, 70, 163, 426
MboII GAAGA 4 cut(s) 170, 226, 229, 295
MhlI GDGCHC 1 cut(s) 229
MlsI TGGCCA 1 cut(s) 550
MluCI AATT 1 cut(s) 513
MluNI TGGCCA 1 cut(s) 550
MmeI TCCRAC 3 cut(s) 48, 282, 364
MnlI CCTC 8 cut(s) 19, 27, 154, 331, 380, 430, 547, 583
Mox20I TGGCCA 1 cut(s) 550
MroI TCCGGA 1 cut(s) 508
MroNI GCCGGC 1 cut(s) 146
MscI TGGCCA 1 cut(s) 550
MseI TTAA 1 cut(s) 446
Msp20I TGGCCA 1 cut(s) 550
MspR9I CCNGG 4 cut(s) 83, 242, 303, 304
MwoI GCNNNNNNNGC 2 cut(s) 470, 483
NaeI GCCGGC 1 cut(s) 148
NciI CCSGG 4 cut(s) 83, 242, 303, 304
NdeII GATC 5 cut(s) 18, 39, 70, 163, 426
NgoMIV GCCGGC 1 cut(s) 146
NheI GCTAGC 1 cut(s) 473
NlaIII CATG 2 cut(s) 197, 322
NlaIV GGNNCC 2 cut(s) 7, 293
NmeAIII GCCGAG 1 cut(s) 338
NspI RCATGY 2 cut(s) 197, 322
PaeR7I CTCGAG 1 cut(s) 98
PciI ACATGT 1 cut(s) 193
PdiI GCCGGC 1 cut(s) 148
PflFI GACNNNGTC 1 cut(s) 380
PkrI GCNGC 1 cut(s) 324
PmaCI CACGTG 1 cut(s) 334
PmlI CACGTG 1 cut(s) 334
Ppu21I YACGTR 1 cut(s) 334
PscI ACATGT 1 cut(s) 193
Psp124BI GAGCTC 1 cut(s) 229
PspCI CACGTG 1 cut(s) 334
PspFI CCCAGC 1 cut(s) 307
PspN4I GGNNCC 2 cut(s) 7, 293
PspPI GGNCC 2 cut(s) 292, 310
PspXI VCTCGAGB 1 cut(s) 98
PsyI GACNNNGTC 1 cut(s) 380
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SacI GAGCTC 1 cut(s) 229
SalI GTCGAC 1 cut(s) 557
SaqAI TTAA 1 cut(s) 446
SatI GCNGC 1 cut(s) 323
Sau3AI GATC 5 cut(s) 18, 39, 70, 163, 426
Sau96I GGNCC 2 cut(s) 292, 310
ScrFI CCNGG 4 cut(s) 83, 242, 303, 304
SduI GDGCHC 1 cut(s) 229
SfaNI GCATC 1 cut(s) 147
Sfr274I CTCGAG 1 cut(s) 98
SlaI CTCGAG 1 cut(s) 98
SmaI CCCGGG 1 cut(s) 304
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 1 cut(s) 513
SsiI CCGC 4 cut(s) 95, 323, 341, 570
SspMI CTAG 3 cut(s) 207, 372, 474
SstI GAGCTC 1 cut(s) 229
StyD4I CCNGG 4 cut(s) 81, 240, 301, 302
TaaI ACNGT 2 cut(s) 355, 482
TaiI ACGT 1 cut(s) 336
TaqI TCGA 3 cut(s) 99, 496, 558
TasI AATT 1 cut(s) 513
TauI GCSGC 1 cut(s) 325
Tru1I TTAA 1 cut(s) 446
Tru9I TTAA 1 cut(s) 446
TspDTI ATGAA 2 cut(s) 94, 284
TspGWI ACGGA 1 cut(s) 237
TspMI CCCGGG 1 cut(s) 302
Tth111I GACNNNGTC 1 cut(s) 380
XceI RCATGY 2 cut(s) 197, 322
XhoI CTCGAG 1 cut(s) 98
XmaI CCCGGG 1 cut(s) 302
XmiI GTMKAC 1 cut(s) 558
XspI CTAG 3 cut(s) 207, 372, 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.