Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0018157

Physical Location & Seq

Genomic Coordinates Reverse (-)

41161736 .. 41164202

Gene Structure 2467 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0331900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGAGCACAGCTAGATTCATCAAGTGTGTCACTGTTGGGGATGGAGCTGTTGGAAAAACTTGCATGCTAATCTCTTATACCAGCAACACCTTCCCCACTGATTATGTGCCTACAGTGTTTGACAACTTCAGTGCTAATGTGGTGGTGGATGGAAGCACAGTTAACCTTGGATTGTGGGACACTGCAGGACAAGAAGATTACAACCGGCTGAGGCCTCTTAGCTATAGAGGTGCAGATGTGTTCTTGTTGGCCTTCTCTCTCATCAGTAAAGCCAGCTATGAAAATATTGCCAAGAAGTGGATACCTGAATTGAGGCATTATGCCCCAACAGTCCCAATTGTGCTTGTGGGAACAAAACTAGATTTGCGAGACGACAAACAGTATTTGATTGATCATCCTGGTGCTACACCGATAGGAACTACACAGGGTGAGGAACTGAAGAAGACAATTGGTGCTGCAGTCTATATTGAGTGCAGCTCCAAGACTCAGCAGAATGTGAAAGCTGTGTTTGATGCTGCCATCAAAGTTGTTCTGCAGCCCCCTAAACCTAAGAGAAGGAAACGGAAGGCTAGGACGTGTGTATTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003824 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009553 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0030684 GO:0030687 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0040008 GO:0042254 GO:0042255 GO:0042273 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0048229 GO:0048638 GO:0048856 GO:0050789 GO:0050793 GO:0055044 GO:0065003 GO:0065007 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AAA_5

Protein Analysis

196

Amino Acids

21.66

Weight (kDa)

9.33

Isoelectric Point (pI)

36.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	8 - 178	2.9e-50	Ras family
Roc	PF08477	8 - 121	1.7e-23	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018157)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0129501 RchiOBHm_Chr2g0175331
rosa_laevigata	RLG00000010884
rosa_multiflora	Rmu_ssc0000434.1_g000019
rosa_roxburghii	Rroxscaffold_5G00332700
rosa_rugosa	Rorug02G0331900
rosa_samantha	Rh4AG116200 Rh5AG421800 Rh5BG437500 Rh5CG460200 Rh6BG278000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	297
AcuI	CTGAAG	2 cut(s)	112, 458
AdeI	CACNNNGTG	1 cut(s)	428
AfiI	CCNNNNNNNGG	1 cut(s)	297
AflIII	ACRYGT	1 cut(s)	575
AjiI	CACGTC	1 cut(s)	576
AjnI	CCWGG	1 cut(s)	397
AluBI	AGCT	6 cut(s)	11, 47, 222, 276, 477, 503
AluI	AGCT	6 cut(s)	11, 47, 222, 276, 477, 503
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	363
AoxI	GGCC	2 cut(s)	212, 249
ApeKI	GCWGC	4 cut(s)	455, 474, 515, 535
AsuHPI	GGTGA	1 cut(s)	440
BbsI	GAAGAC	1 cut(s)	449
Bbv12I	GWGCWC	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	209
BbvI	GCAGC	4 cut(s)	442, 486, 502, 547
BccI	CCATC	3 cut(s)	35, 143, 527
BciT130I	CCWGG	1 cut(s)	399
BciVI	GTATCC	1 cut(s)	294
BclI	TGATCA	1 cut(s)	391
BcoDI	GTCTC	1 cut(s)	363
BfaI	CTAG	3 cut(s)	12, 359, 570
BfmI	CTRYAG	5 cut(s)	111, 183, 223, 456, 533
BfuI	GTATCC	1 cut(s)	294
BisI	GCNGC	4 cut(s)	456, 475, 516, 536
BlsI	GCNGC	4 cut(s)	457, 476, 517, 537
Bme1390I	CCNGG	1 cut(s)	399
BmgBI	CACGTC	1 cut(s)	576
BmrFI	CCNGG	1 cut(s)	399
BmsI	GCATC	1 cut(s)	502
BpiI	GAAGAC	1 cut(s)	449
BplI	GAGNNNNNCTC	2 cut(s)	461, 493
Bpu10I	CCTNAGC	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
Bse118I	RCCGGY	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	3 cut(s)	46, 154, 394
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseMII	CTCAG	2 cut(s)	200, 500
BseXI	GCAGC	4 cut(s)	442, 486, 502, 547
BsgI	GTGCAG	2 cut(s)	252, 493
BshFI	GGCC	2 cut(s)	214, 251
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	205
BslFI	GGGAC	2 cut(s)	191, 317
BslI	CCNNNNNNNGG	1 cut(s)	297
BsmAI	GTCTC	1 cut(s)	363
BsmBI	CGTCTC	1 cut(s)	363
BsmFI	GGGAC	2 cut(s)	191, 317
BsnI	GGCC	2 cut(s)	214, 251
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	391
BspANI	GGCC	2 cut(s)	214, 251
BspCNI	CTCAG	2 cut(s)	201, 499
BspMAI	CTGCAG	3 cut(s)	187, 460, 537
BsrFI	RCCGGY	1 cut(s)	204
BssAI	RCCGGY	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	1 cut(s)	391
BssT1I	CCWWGG	1 cut(s)	166
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	5 cut(s)	34, 115, 160, 331, 381
BstC8I	GCNNGC	2 cut(s)	65, 274
BstDEI	CTNAG	4 cut(s)	209, 218, 486, 549
BstF5I	GGATG	3 cut(s)	46, 154, 394
BstKTI	GATC	1 cut(s)	394
BstMAI	GTCTC	1 cut(s)	363
BstMBI	GATC	1 cut(s)	391
BstNI	CCWGG	1 cut(s)	399
BstNSI	RCATGY	1 cut(s)	67
BstSCI	CCNGG	1 cut(s)	397
BstSFI	CTRYAG	5 cut(s)	111, 183, 223, 456, 533
BstV1I	GCAGC	4 cut(s)	442, 486, 502, 547
BstV2I	GAAGAC	1 cut(s)	449
BsuI	GTATCC	1 cut(s)	294
BsuRI	GGCC	2 cut(s)	214, 251
BtrI	CACGTC	1 cut(s)	576
BtsCI	GGATG	3 cut(s)	46, 154, 394
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	5 cut(s)	30, 96, 120, 136, 180
Cac8I	GCNNGC	2 cut(s)	65, 274
Cfr10I	RCCGGY	1 cut(s)	204
CviAII	CATG	1 cut(s)	64
DdeI	CTNAG	4 cut(s)	209, 218, 486, 549
DpnI	GATC	1 cut(s)	393
DpnII	GATC	1 cut(s)	391
DraIII	CACNNNGTG	1 cut(s)	428
Eco130I	CCWWGG	1 cut(s)	166
Eco147I	AGGCCT	1 cut(s)	214
Eco57I	CTGAAG	2 cut(s)	112, 458
EcoRII	CCWGG	1 cut(s)	397
EcoT14I	CCWWGG	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	166
Esp3I	CGTCTC	1 cut(s)	363
FaeI	CATG	1 cut(s)	67
FaiI	YATR	7 cut(s)	65, 78, 105, 225, 279, 321, 465
FaqI	GGGAC	2 cut(s)	191, 317
FatI	CATG	1 cut(s)	63
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	4 cut(s)	456, 475, 516, 536
FokI	GGATG	3 cut(s)	53, 161, 381
Fsp4HI	GCNGC	4 cut(s)	456, 475, 516, 536
FspBI	CTAG	3 cut(s)	12, 359, 570
GluI	GCNGC	4 cut(s)	456, 475, 516, 536
HaeIII	GGCC	2 cut(s)	214, 251
HapII	CCGG	1 cut(s)	205
Hin1II	CATG	1 cut(s)	67
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	2 cut(s)	15, 484
HpaI	GTTAAC	1 cut(s)	163
HpaII	CCGG	1 cut(s)	205
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	1 cut(s)	163
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	4 cut(s)	100, 262, 549, 559
HpyCH4III	ACNGT	5 cut(s)	34, 115, 160, 331, 381
HpyCH4IV	ACGT	1 cut(s)	575
HpyCH4V	TGCA	6 cut(s)	63, 185, 233, 458, 474, 535
HpyF3I	CTNAG	4 cut(s)	209, 218, 486, 549
HpySE526I	ACGT	1 cut(s)	575
Hsp92II	CATG	1 cut(s)	67
Ksp22I	TGATCA	1 cut(s)	391
KspAI	GTTAAC	1 cut(s)	163
Kzo9I	GATC	1 cut(s)	391
LmnI	GCTCC	2 cut(s)	44, 482
LpnPI	CCDG	8 cut(s)	94, 171, 218, 286, 318, 384, 410, 411
Lsp1109I	GCAGC	4 cut(s)	442, 486, 502, 547
LweI	GCATC	1 cut(s)	502
MaeI	CTAG	3 cut(s)	12, 359, 570
MaeII	ACGT	1 cut(s)	575
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	1 cut(s)	393
MboI	GATC	1 cut(s)	391
MboII	GAAGA	3 cut(s)	206, 451, 454
MfeI	CAATTG	2 cut(s)	336, 447
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	3 cut(s)	308, 336, 447
MlyI	GAGTC	1 cut(s)	478
MmeI	TCCRAC	1 cut(s)	31
MnlI	CCTC	5 cut(s)	204, 221, 225, 306, 424
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	399
MspI	CCGG	1 cut(s)	205
MspR9I	CCNGG	1 cut(s)	399
MunI	CAATTG	2 cut(s)	336, 447
MvaI	CCWGG	1 cut(s)	399
NdeII	GATC	1 cut(s)	391
NlaIII	CATG	1 cut(s)	67
NmuCI	GTSAC	1 cut(s)	28
NspI	RCATGY	1 cut(s)	67
PaeI	GCATGC	1 cut(s)	67
PceI	AGGCCT	1 cut(s)	214
PfeI	GAWTC	1 cut(s)	15
PflMI	CCANNNNNTGG	1 cut(s)	297
PkrI	GCNGC	4 cut(s)	457, 476, 517, 537
PleI	GAGTC	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	478
Psp6I	CCWGG	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	397
PstI	CTGCAG	3 cut(s)	187, 460, 537
RseI	CAYNNNNRTG	1 cut(s)	399
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	4 cut(s)	456, 475, 516, 536
Sau3AI	GATC	1 cut(s)	391
SchI	GAGTC	1 cut(s)	478
ScrFI	CCNGG	1 cut(s)	399
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	1 cut(s)	502
SfcI	CTRYAG	5 cut(s)	111, 183, 223, 456, 533
SmiMI	CAYNNNNRTG	1 cut(s)	399
SphI	GCATGC	1 cut(s)	67
Sse9I	AATT	3 cut(s)	308, 336, 447
SseBI	AGGCCT	1 cut(s)	214
SspI	AATATT	1 cut(s)	286
SspMI	CTAG	3 cut(s)	12, 359, 570
StuI	AGGCCT	1 cut(s)	214
StyD4I	CCNGG	1 cut(s)	397
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	5 cut(s)	34, 115, 160, 331, 381
TaiI	ACGT	1 cut(s)	578
TasI	AATT	3 cut(s)	308, 336, 447
TfiI	GAWTC	1 cut(s)	15
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	5 cut(s)	37, 103, 120, 136, 187
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	4 cut(s)	455, 474, 515, 535
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	2 cut(s)	7, 294
TspGWI	ACGGA	1 cut(s)	577
TspRI	CASTG	5 cut(s)	37, 103, 120, 136, 187
Van91I	CCANNNNNTGG	1 cut(s)	297
XceI	RCATGY	1 cut(s)	67
XspI	CTAG	3 cut(s)	12, 359, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.