Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0019973

Physical Location & Seq

Genomic Coordinates Forward (+)

6481366 .. 6493132

Gene Structure 11767 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00004690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGTTTTTTATGAGTTGAACCATAGAGAAATCATACCGTCAAATACTTGGATATCAGGCTATGCTCATAACAGGCTATATCAGGATGCAATAAAGACATTCTTGTTAGGAATTATGGAACTTAAGCCAAACAATAATGCATTTGGTCTTCTTGTAAGTGCATTTGTTTGTGCTCAGGTTACATTCCGACCGCATCGTGGTATCGAGCAGGTCTTCCTGTTTCTCCTATTTACCTTAGTAGCAATGGGTGAAGTTACAAAAGCAAATCTTGATGCTCTTACGCTTCTCTTACCGCGAGTTTACCGCTGCCCTCAACACCGAGAAGATTATAAGCACAAGAAGGAGTACAAGAAGGAGTACAAGAAGGAGTTCTTAATTCAAGGTGCTTCAAGGTGGAGGAAACACACACAAGGAGAGATCAAGGAGAGGAACTTTGTGCATAAGAGTAGAAGCATTGCTGGGTGGTCAAGTACAGGAGTATTGCTGGGAAGCCAGGTACAAGCAATGTTGCTGGGAAGTCGTGGCAGCGACGATTACAGCCTCCCTTGGTTGAAGATAGGACAACACCTATCCCTCCTAGCTGAAGACTCTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000960 GO:0000962 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010604 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903313 GO:1905637 GO:1905639

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

198

Amino Acids

22.84

Weight (kDa)

9.58

Isoelectric Point (pI)

30.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019973)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0218941
rosa_roxburghii	Rroxscaffold_1G00004690 Rroxscaffold_6G00416650
rosa_samantha	Rh7AG323300 Rh7BG314400 Rh7CG340000 Rh7DG320500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	330
Acc36I	ACCTGC	1 cut(s)	199
AccII	CGCG	1 cut(s)	295
AciI	CCGC	3 cut(s)	191, 293, 304
AfaI	GTAC	4 cut(s)	347, 359, 472, 498
AfiI	CCNNNNNNNGG	1 cut(s)	197
AflII	CTTAAG	1 cut(s)	122
AgsI	TTSAA	4 cut(s)	19, 380, 390, 553
AjnI	CCWGG	1 cut(s)	492
AluBI	AGCT	1 cut(s)	581
AluI	AGCT	1 cut(s)	581
Alw21I	GWGCWC	1 cut(s)	175
ApeKI	GCWGC	2 cut(s)	306, 525
Asp700I	GAANNNNTTC	1 cut(s)	368
AsuHPI	GGTGA	1 cut(s)	260
BbsI	GAAGAC	3 cut(s)	140, 205, 591
Bbv12I	GWGCWC	1 cut(s)	175
BbvI	GCAGC	2 cut(s)	293, 537
BciT130I	CCWGG	1 cut(s)	494
BfaI	CTAG	1 cut(s)	578
BfrI	CTTAAG	1 cut(s)	122
BfuAI	ACCTGC	1 cut(s)	199
BisI	GCNGC	2 cut(s)	307, 526
BlsI	GCNGC	2 cut(s)	308, 527
Bme1390I	CCNGG	1 cut(s)	494
BmrFI	CCNGG	1 cut(s)	494
BmsI	GCATC	3 cut(s)	76, 202, 262
BpiI	GAAGAC	3 cut(s)	140, 205, 591
Bpu10I	CCTNAGC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	545
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
Bse3DI	GCAATG	3 cut(s)	249, 453, 510
BseBI	CCWGG	1 cut(s)	494
BseDI	CCNNGG	1 cut(s)	545
BseGI	GGATG	1 cut(s)	91
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMI	GCAATG	3 cut(s)	249, 453, 510
BseMII	CTCAG	1 cut(s)	188
BseXI	GCAGC	2 cut(s)	293, 537
BseYI	CCCAGC	3 cut(s)	458, 484, 511
Bsh1236I	CGCG	1 cut(s)	295
Bsh1285I	CGRYCG	1 cut(s)	191
BsiEI	CGRYCG	1 cut(s)	191
BsiHKAI	GWGCWC	1 cut(s)	175
BslI	CCNNNNNNNGG	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp143I	GATC	1 cut(s)	417
BspACI	CCGC	3 cut(s)	191, 293, 304
BspCNI	CTCAG	1 cut(s)	187
BspFNI	CGCG	1 cut(s)	295
BspMI	ACCTGC	1 cut(s)	199
BspTI	CTTAAG	1 cut(s)	122
BsrDI	GCAATG	3 cut(s)	249, 453, 510
BssECI	CCNNGG	1 cut(s)	545
BssMI	GATC	1 cut(s)	417
BssT1I	CCWWGG	1 cut(s)	545
Bst2UI	CCWGG	1 cut(s)	494
Bst4CI	ACNGT	1 cut(s)	39
BstAFI	CTTAAG	1 cut(s)	122
BstDEI	CTNAG	2 cut(s)	174, 235
BstF5I	GGATG	1 cut(s)	91
BstFNI	CGCG	1 cut(s)	295
BstKTI	GATC	1 cut(s)	420
BstMBI	GATC	1 cut(s)	417
BstMCI	CGRYCG	1 cut(s)	191
BstNI	CCWGG	1 cut(s)	494
BstSCI	CCNGG	1 cut(s)	492
BstUI	CGCG	1 cut(s)	295
BstV1I	GCAGC	2 cut(s)	293, 537
BstV2I	GAAGAC	3 cut(s)	140, 205, 591
BtsCI	GGATG	1 cut(s)	91
BveI	ACCTGC	1 cut(s)	199
Csp6I	GTAC	4 cut(s)	346, 358, 471, 497
CviJI	RGCY	6 cut(s)	60, 76, 127, 492, 540, 581
CviKI_1	RGCY	6 cut(s)	60, 76, 127, 492, 540, 581
CviQI	GTAC	4 cut(s)	346, 358, 471, 497
DdeI	CTNAG	2 cut(s)	174, 235
DpnI	GATC	1 cut(s)	419
DpnII	GATC	1 cut(s)	417
Eco130I	CCWWGG	1 cut(s)	545
Eco32I	GATATC	1 cut(s)	54
EcoRII	CCWGG	1 cut(s)	492
EcoRV	GATATC	1 cut(s)	54
EcoT14I	CCWWGG	1 cut(s)	545
EcoT22I	ATGCAT	1 cut(s)	142
ErhI	CCWWGG	1 cut(s)	545
FaiI	YATR	9 cut(s)	12, 24, 35, 63, 69, 79, 116, 330, 441
FalI	AAGNNNNNCTT	6 cut(s)	86, 118, 252, 284, 356, 388
Fnu4HI	GCNGC	2 cut(s)	307, 526
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	2 cut(s)	307, 526
FspBI	CTAG	1 cut(s)	578
GluI	GCNGC	2 cut(s)	307, 526
GsaI	CCCAGC	3 cut(s)	462, 488, 515
HinfI	GANTC	1 cut(s)	587
HphI	GGTGA	1 cut(s)	260
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	1 cut(s)	188
Hpy188III	TCNNGA	2 cut(s)	83, 269
Hpy8I	GTNNAC	1 cut(s)	301
Hpy99I	CGWCG	1 cut(s)	533
HpyAV	CCTTC	3 cut(s)	334, 346, 358
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4V	TGCA	4 cut(s)	89, 140, 161, 439
HpyF3I	CTNAG	2 cut(s)	174, 235
Kzo9I	GATC	1 cut(s)	417
Lsp1109I	GCAGC	2 cut(s)	293, 537
LweI	GCATC	3 cut(s)	76, 202, 262
MaeI	CTAG	1 cut(s)	578
MaeIII	GTNAC	2 cut(s)	178, 253
MalI	GATC	1 cut(s)	419
MboI	GATC	1 cut(s)	417
MboII	GAAGA	5 cut(s)	140, 205, 335, 565, 596
MhlI	GDGCHC	1 cut(s)	175
MluCI	AATT	2 cut(s)	111, 375
MlyI	GAGTC	1 cut(s)	581
MmeI	TCCRAC	1 cut(s)	211
MnlI	CCTC	5 cut(s)	321, 390, 420, 551, 584
Mph1103I	ATGCAT	1 cut(s)	142
MroXI	GAANNNNTTC	1 cut(s)	368
MseI	TTAA	2 cut(s)	123, 374
MspA1I	CMGCKG	1 cut(s)	306
MspCI	CTTAAG	1 cut(s)	122
MspR9I	CCNGG	1 cut(s)	494
MvaI	CCWGG	1 cut(s)	494
MvnI	CGCG	1 cut(s)	295
NdeII	GATC	1 cut(s)	417
NsiI	ATGCAT	1 cut(s)	142
PdmI	GAANNNNTTC	1 cut(s)	368
PkrI	GCNGC	2 cut(s)	308, 527
PleI	GAGTC	1 cut(s)	581
PpsI	GAGTC	1 cut(s)	581
PsiI	TTATAA	1 cut(s)	330
Psp6I	CCWGG	1 cut(s)	492
PspFI	CCCAGC	3 cut(s)	458, 484, 511
PspGI	CCWGG	1 cut(s)	492
RsaI	GTAC	4 cut(s)	347, 359, 472, 498
RsaNI	GTAC	4 cut(s)	346, 358, 471, 497
SaqAI	TTAA	2 cut(s)	123, 374
SatI	GCNGC	2 cut(s)	307, 526
Sau3AI	GATC	1 cut(s)	417
SchI	GAGTC	1 cut(s)	581
ScrFI	CCNGG	1 cut(s)	494
SduI	GDGCHC	1 cut(s)	175
SetI	ASST	8 cut(s)	180, 213, 236, 385, 395, 498, 570, 583
SfaNI	GCATC	3 cut(s)	76, 202, 262
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	2 cut(s)	111, 375
SsiI	CCGC	3 cut(s)	191, 293, 304
SspMI	CTAG	1 cut(s)	578
StyD4I	CCNGG	1 cut(s)	492
StyI	CCWWGG	1 cut(s)	545
TaaI	ACNGT	1 cut(s)	39
TaqI	TCGA	1 cut(s)	204
TasI	AATT	2 cut(s)	111, 375
TatI	WGTACW	3 cut(s)	345, 357, 470
Tru1I	TTAA	2 cut(s)	123, 374
Tru9I	TTAA	2 cut(s)	123, 374
TseI	GCWGC	2 cut(s)	306, 525
Vha464I	CTTAAG	1 cut(s)	122
XmnI	GAANNNNTTC	1 cut(s)	368
XspI	CTAG	1 cut(s)	578
Zsp2I	ATGCAT	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.