Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr7g0218941 |
| rosa_roxburghii | Rroxscaffold_1G00004690 Rroxscaffold_6G00416650 |
| rosa_samantha | Rh7AG323300 Rh7BG314400 Rh7CG340000 Rh7DG320500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 106 |
| AflII | CTTAAG | 1 cut(s) | 242 |
| AgsI | TTSAA | 1 cut(s) | 151 |
| AluBI | AGCT | 2 cut(s) | 60, 347 |
| AluI | AGCT | 2 cut(s) | 60, 347 |
| Alw21I | GWGCWC | 1 cut(s) | 295 |
| ApoI | RAATTY | 1 cut(s) | 106 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 98, 130 |
| AspS9I | GGNCC | 1 cut(s) | 266 |
| AvaII | GGWCC | 1 cut(s) | 266 |
| Bbv12I | GWGCWC | 1 cut(s) | 295 |
| BfrI | CTTAAG | 1 cut(s) | 242 |
| Bme18I | GGWCC | 1 cut(s) | 266 |
| BmgT120I | GGNCC | 1 cut(s) | 266 |
| BmsI | GCATC | 1 cut(s) | 196 |
| Bpu10I | CCTNAGC | 1 cut(s) | 294 |
| Bse1I | ACTGG | 1 cut(s) | 31 |
| BseGI | GGATG | 1 cut(s) | 211 |
| BseMII | CTCAG | 1 cut(s) | 308 |
| BseNI | ACTGG | 1 cut(s) | 31 |
| BsiHKAI | GWGCWC | 1 cut(s) | 295 |
| BslFI | GGGAC | 1 cut(s) | 100 |
| BsmFI | GGGAC | 1 cut(s) | 100 |
| Bsp1286I | GDGCHC | 1 cut(s) | 295 |
| Bsp143I | GATC | 1 cut(s) | 3 |
| BspCNI | CTCAG | 1 cut(s) | 307 |
| BspTI | CTTAAG | 1 cut(s) | 242 |
| BsrI | ACTGG | 1 cut(s) | 31 |
| BssMI | GATC | 1 cut(s) | 3 |
| Bst4CI | ACNGT | 1 cut(s) | 171 |
| BstAFI | CTTAAG | 1 cut(s) | 242 |
| BstDEI | CTNAG | 2 cut(s) | 294, 348 |
| BstF5I | GGATG | 1 cut(s) | 211 |
| BstKTI | GATC | 1 cut(s) | 6 |
| BstMBI | GATC | 1 cut(s) | 3 |
| BtsCI | GGATG | 1 cut(s) | 211 |
| Cfr13I | GGNCC | 1 cut(s) | 266 |
| CviAII | CATG | 2 cut(s) | 87, 133 |
| CviJI | RGCY | 6 cut(s) | 30, 60, 196, 247, 318, 347 |
| CviKI_1 | RGCY | 6 cut(s) | 30, 60, 196, 247, 318, 347 |
| DdeI | CTNAG | 2 cut(s) | 294, 348 |
| DpnI | GATC | 1 cut(s) | 5 |
| DpnII | GATC | 1 cut(s) | 3 |
| Eco47I | GGWCC | 1 cut(s) | 266 |
| FaeI | CATG | 2 cut(s) | 90, 136 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 206, 238 |
| FaqI | GGGAC | 1 cut(s) | 100 |
| FatI | CATG | 2 cut(s) | 86, 132 |
| FokI | GGATG | 1 cut(s) | 218 |
| Hin1II | CATG | 2 cut(s) | 90, 136 |
| HindIII | AAGCTT | 1 cut(s) | 345 |
| HinfI | GANTC | 3 cut(s) | 82, 113, 125 |
| Hpy188I | TCNGA | 2 cut(s) | 309, 340 |
| Hpy188III | TCNNGA | 1 cut(s) | 203 |
| HpyCH4III | ACNGT | 1 cut(s) | 171 |
| HpyCH4V | TGCA | 5 cut(s) | 18, 54, 104, 209, 281 |
| HpyF3I | CTNAG | 2 cut(s) | 294, 348 |
| Hsp92II | CATG | 2 cut(s) | 90, 136 |
| Kzo9I | GATC | 1 cut(s) | 3 |
| LpnPI | CCDG | 5 cut(s) | 12, 131, 178, 188, 281 |
| LweI | GCATC | 1 cut(s) | 196 |
| MalI | GATC | 1 cut(s) | 5 |
| MboI | GATC | 1 cut(s) | 3 |
| MhlI | GDGCHC | 1 cut(s) | 295 |
| MluCI | AATT | 4 cut(s) | 106, 231, 253, 282 |
| MlyI | GAGTC | 3 cut(s) | 91, 119, 122 |
| MnlI | CCTC | 1 cut(s) | 279 |
| MseI | TTAA | 1 cut(s) | 243 |
| MspCI | CTTAAG | 1 cut(s) | 242 |
| NdeII | GATC | 1 cut(s) | 3 |
| NlaIII | CATG | 2 cut(s) | 90, 136 |
| PflFI | GACNNNGTC | 1 cut(s) | 128 |
| PleI | GAGTC | 3 cut(s) | 90, 119, 121 |
| PpsI | GAGTC | 3 cut(s) | 90, 119, 121 |
| PspPI | GGNCC | 1 cut(s) | 266 |
| PsyI | GACNNNGTC | 1 cut(s) | 128 |
| SaqAI | TTAA | 1 cut(s) | 243 |
| Sau3AI | GATC | 1 cut(s) | 3 |
| Sau96I | GGNCC | 1 cut(s) | 266 |
| SchI | GAGTC | 3 cut(s) | 91, 119, 122 |
| SduI | GDGCHC | 1 cut(s) | 295 |
| SetI | ASST | 3 cut(s) | 62, 300, 349 |
| SfaNI | GCATC | 1 cut(s) | 196 |
| SinI | GGWCC | 1 cut(s) | 266 |
| SmlI | CTYRAG | 1 cut(s) | 242 |
| SmoI | CTYRAG | 1 cut(s) | 242 |
| Sse9I | AATT | 4 cut(s) | 106, 231, 253, 282 |
| TaaI | ACNGT | 1 cut(s) | 171 |
| TasI | AATT | 4 cut(s) | 106, 231, 253, 282 |
| Tru1I | TTAA | 1 cut(s) | 243 |
| Tru9I | TTAA | 1 cut(s) | 243 |
| TspGWI | ACGGA | 1 cut(s) | 24 |
| Tth111I | GACNNNGTC | 1 cut(s) | 128 |
| Vha464I | CTTAAG | 1 cut(s) | 242 |
| VpaK11BI | GGWCC | 1 cut(s) | 266 |
| XapI | RAATTY | 1 cut(s) | 106 |