Rroxscaffold_1G00011930

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
14899619 .. 14900601
983 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00011930.1

Sequence Viewer

Length: 189 bp
ATGGGCCGTGAAGGCCCTCGCAATGTATGGAAAAGAGATGGTGGTGCTGGCCCTAGTGGTCATGGAAACAAGGTAAAAAGGGCACCCAAGAACCCTTCAGTCAAACAGATAGAGTTGGCAATGAACCATGCTATAGGTGTGGAATCATTGAGCATTGGTAGAAGAACTGCCAAGCAAGCAACATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

62

Amino Acids

6.69

Weight (kDa)

11.41

Isoelectric Point (pI)

53.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021625)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 82
AcuI CTGAAG 1 cut(s) 81
AoxI GGCC 3 cut(s) 4, 13, 49
AspS9I GGNCC 3 cut(s) 4, 14, 50
BaeGI GKGCMC 1 cut(s) 85
BanI GGYRCC 1 cut(s) 82
BccI CCATC 1 cut(s) 32
BfaI CTAG 1 cut(s) 54
BfmI CTRYAG 1 cut(s) 132
BglI GCCNNNNNGGC 1 cut(s) 12
BmgT120I GGNCC 3 cut(s) 4, 14, 50
BmiI GGNNCC 1 cut(s) 84
Bse3DI GCAATG 2 cut(s) 28, 126
BseMI GCAATG 2 cut(s) 28, 126
BseSI GKGCMC 1 cut(s) 85
BshFI GGCC 3 cut(s) 6, 15, 51
BshNI GGYRCC 1 cut(s) 82
BsnI GGCC 3 cut(s) 6, 15, 51
Bsp1286I GDGCHC 1 cut(s) 85
BspANI GGCC 3 cut(s) 6, 15, 51
BspLI GGNNCC 1 cut(s) 84
BspT107I GGYRCC 1 cut(s) 82
BsrDI GCAATG 2 cut(s) 28, 126
BstC8I GCNNGC 2 cut(s) 49, 177
BstMWI GCNNNNNNNGC 2 cut(s) 12, 176
BstSFI CTRYAG 1 cut(s) 132
BstSLI GKGCMC 1 cut(s) 85
BsuRI GGCC 3 cut(s) 6, 15, 51
Cac8I GCNNGC 2 cut(s) 49, 177
Cfr13I GGNCC 3 cut(s) 4, 14, 50
CviAII CATG 3 cut(s) 62, 128, 183
CviJI RGCY 3 cut(s) 6, 15, 51
CviKI_1 RGCY 3 cut(s) 6, 15, 51
Eco57I CTGAAG 1 cut(s) 81
EcoO109I RGGNCCY 1 cut(s) 14
FaeI CATG 3 cut(s) 65, 131, 186
FaiI YATR 5 cut(s) 28, 63, 129, 134, 184
FatI CATG 3 cut(s) 61, 127, 182
FspBI CTAG 1 cut(s) 54
HaeIII GGCC 3 cut(s) 6, 15, 51
Hin1II CATG 3 cut(s) 65, 131, 186
HinfI GANTC 1 cut(s) 143
HpyAV CCTTC 2 cut(s) 5, 105
HpyF10VI GCNNNNNNNGC 2 cut(s) 12, 176
Hsp92II CATG 3 cut(s) 65, 131, 186
LpnPI CCDG 1 cut(s) 33
MaeI CTAG 1 cut(s) 54
MboII GAAGA 1 cut(s) 174
MhlI GDGCHC 1 cut(s) 85
MnlI CCTC 1 cut(s) 27
MwoI GCNNNNNNNGC 2 cut(s) 12, 176
NlaIII CATG 3 cut(s) 65, 131, 186
NlaIV GGNNCC 1 cut(s) 84
PfeI GAWTC 1 cut(s) 143
PspN4I GGNNCC 1 cut(s) 84
PspPI GGNCC 3 cut(s) 4, 14, 50
Sau96I GGNCC 3 cut(s) 4, 14, 50
SduI GDGCHC 1 cut(s) 85
SetI ASST 2 cut(s) 75, 139
SfcI CTRYAG 1 cut(s) 132
SfiI GGCCNNNNNGGCC 1 cut(s) 12
SgeI CNNG 9 cut(s) 20, 30, 60, 66, 74, 82, 100, 140, 184
SspMI CTAG 1 cut(s) 54
TfiI GAWTC 1 cut(s) 143
TspDTI ATGAA 1 cut(s) 137
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.