Rroxscaffold_6G00395160

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
16160698 .. 16165929
5232 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_6G00395160.1

Sequence Viewer

Length: 189 bp
ATGGGCCGTGGAAGCCCTTCCAATGTATGGCGCCGAGATGGTGGTGCTGGCCCCGGTGGTCATGGAAACAAGGTGCAAAGGGCACCTAAGAACCCTTCGGTCAAACAGGTAGAGTTGGCAATGAACCATGCTATAGGTGTGGAGTCATGGGGCATTGGTACAAGAACTGTCAAGCAAGCAACAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

62

Amino Acids

6.52

Weight (kDa)

10.95

Isoelectric Point (pI)

42.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021625)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 30, 82
AccB7I CCANNNNNTGG 1 cut(s) 27
AcyI GRCGYC 1 cut(s) 31
AfaI GTAC 1 cut(s) 160
AfiI CCNNNNNNNGG 1 cut(s) 27
AoxI GGCC 2 cut(s) 4, 49
Asp700I GAANNNNTTC 1 cut(s) 16
AspLEI GCGC 1 cut(s) 33
AspS9I GGNCC 2 cut(s) 4, 50
AsuC2I CCSGG 1 cut(s) 54
BaeGI GKGCMC 1 cut(s) 85
BanI GGYRCC 2 cut(s) 30, 82
BccI CCATC 1 cut(s) 32
BcnI CCSGG 1 cut(s) 54
BfmI CTRYAG 1 cut(s) 132
BfoI RGCGCY 1 cut(s) 34
Bme1390I CCNGG 1 cut(s) 54
BmgT120I GGNCC 2 cut(s) 4, 50
BmiI GGNNCC 3 cut(s) 32, 52, 84
BmrFI CCNGG 1 cut(s) 54
BpuMI CCSGG 1 cut(s) 54
BsaHI GRCGYC 1 cut(s) 31
BsaJI CCNNGG 2 cut(s) 7, 52
Bsc4I CCNNNNNNNGG 1 cut(s) 27
Bse3DI GCAATG 1 cut(s) 126
BseDI CCNNGG 2 cut(s) 7, 52
BseLI CCNNNNNNNGG 1 cut(s) 27
BseMI GCAATG 1 cut(s) 126
BseSI GKGCMC 1 cut(s) 85
BshFI GGCC 2 cut(s) 6, 51
BshNI GGYRCC 2 cut(s) 30, 82
BsiSI CCGG 1 cut(s) 54
BslI CCNNNNNNNGG 1 cut(s) 27
BsnI GGCC 2 cut(s) 6, 51
Bsp1286I GDGCHC 1 cut(s) 85
BspANI GGCC 2 cut(s) 6, 51
BspLI GGNNCC 3 cut(s) 32, 52, 84
BspT107I GGYRCC 2 cut(s) 30, 82
BsrDI GCAATG 1 cut(s) 126
BssECI CCNNGG 2 cut(s) 7, 52
BssNI GRCGYC 1 cut(s) 31
Bst4CI ACNGT 1 cut(s) 169
BstACI GRCGYC 1 cut(s) 31
BstC8I GCNNGC 2 cut(s) 49, 177
BstDEI CTNAG 1 cut(s) 87
BstDSI CCRYGG 1 cut(s) 7
BstH2I RGCGCY 1 cut(s) 34
BstHHI GCGC 1 cut(s) 33
BstMWI GCNNNNNNNGC 1 cut(s) 12
BstSCI CCNGG 1 cut(s) 52
BstSFI CTRYAG 1 cut(s) 132
BstSLI GKGCMC 1 cut(s) 85
BsuRI GGCC 2 cut(s) 6, 51
BtgI CCRYGG 1 cut(s) 7
Cac8I GCNNGC 2 cut(s) 49, 177
CfoI GCGC 1 cut(s) 33
Cfr13I GGNCC 2 cut(s) 4, 50
Csp6I GTAC 1 cut(s) 159
CviAII CATG 3 cut(s) 62, 128, 147
CviJI RGCY 3 cut(s) 6, 15, 51
CviKI_1 RGCY 3 cut(s) 6, 15, 51
CviQI GTAC 1 cut(s) 159
DdeI CTNAG 1 cut(s) 87
DinI GGCGCC 1 cut(s) 32
EgeI GGCGCC 1 cut(s) 32
EheI GGCGCC 1 cut(s) 32
FaeI CATG 3 cut(s) 65, 131, 150
FaiI YATR 5 cut(s) 28, 63, 129, 134, 148
FatI CATG 3 cut(s) 61, 127, 146
GlaI GCGC 1 cut(s) 32
HaeII RGCGCY 1 cut(s) 34
HaeIII GGCC 2 cut(s) 6, 51
HapII CCGG 1 cut(s) 54
HhaI GCGC 1 cut(s) 33
Hin1I GRCGYC 1 cut(s) 31
Hin1II CATG 3 cut(s) 65, 131, 150
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
HinfI GANTC 1 cut(s) 143
HpaII CCGG 1 cut(s) 54
HpyAV CCTTC 2 cut(s) 27, 105
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4V TGCA 1 cut(s) 76
HpyF10VI GCNNNNNNNGC 1 cut(s) 12
HpyF3I CTNAG 1 cut(s) 87
Hsp92I GRCGYC 1 cut(s) 31
Hsp92II CATG 3 cut(s) 65, 131, 150
HspAI GCGC 1 cut(s) 31
KasI GGCGCC 1 cut(s) 30
LpnPI CCDG 3 cut(s) 33, 67, 92
MhlI GDGCHC 1 cut(s) 85
Mly113I GGCGCC 1 cut(s) 31
MlyI GAGTC 1 cut(s) 152
MroXI GAANNNNTTC 1 cut(s) 16
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 1 cut(s) 54
MwoI GCNNNNNNNGC 1 cut(s) 12
NarI GGCGCC 1 cut(s) 31
NciI CCSGG 1 cut(s) 54
NlaIII CATG 3 cut(s) 65, 131, 150
NlaIV GGNNCC 3 cut(s) 32, 52, 84
NmeAIII GCCGAG 1 cut(s) 59
PdmI GAANNNNTTC 1 cut(s) 16
PflMI CCANNNNNTGG 1 cut(s) 27
PleI GAGTC 1 cut(s) 151
PluTI GGCGCC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 151
PspN4I GGNNCC 3 cut(s) 32, 52, 84
PspPI GGNCC 2 cut(s) 4, 50
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
Sau96I GGNCC 2 cut(s) 4, 50
SchI GAGTC 1 cut(s) 152
ScrFI CCNGG 1 cut(s) 54
SduI GDGCHC 1 cut(s) 85
SetI ASST 4 cut(s) 75, 88, 111, 139
SfcI CTRYAG 1 cut(s) 132
SfoI GGCGCC 1 cut(s) 32
SspDI GGCGCC 1 cut(s) 30
StyD4I CCNGG 1 cut(s) 52
TaaI ACNGT 1 cut(s) 169
TaqII GACCGA 1 cut(s) 88
TspDTI ATGAA 1 cut(s) 137
Van91I CCANNNNNTGG 1 cut(s) 27
XmnI GAANNNNTTC 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.