Rroxscaffold_1G00017350

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0024389
Physical Location & Seq
Forward (+)
21463825 .. 21469013
5189 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00017350.1

Sequence Viewer

Length: 378 bp
ATGGCTTTGACATCAGGCCTCTTCACCTCTGCCTTAGGTACAGTCACACTGAGGACTCCATTCTCCATAGCAGCCTTAACCTCATCAAGCTTCGCATTCTCAGGAAGCCTGAATCTCCTGGAGAACTTGCCGCTGCTTCTCTCGACCCGGTGCCACTTGTCGTTCTTGTCCTCCTTCTCTATCTTCCTCTCTCCGCTGATCTGCAGCACCCTGTCATCTTCAATCTCAACCTTGACCTCTTCTTTCTTCAGCCCCGGAAGGTCGGCCTTGAACAGATGGGCTTCTGGGGTCTCCTTCCAGTCGATCCTGGTGTTGATGAAAGCCGAATTTTCTAGAGGGCATTCAGGGAATGTGGAGAGCCATGGGGAAGGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.17

Weight (kDa)

8.94

Isoelectric Point (pI)

44.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0024389)

Species Orthologous Gene IDs
malus_domestica MD08G1068400.v1.1
pyrus_communis pycom07g19450
rosa_roxburghii Rroxscaffold_1G00017350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 150
AciI CCGC 2 cut(s) 131, 194
AclWI GGATC 1 cut(s) 298
AcsI RAATTY 1 cut(s) 326
AcuI CTGAAG 1 cut(s) 232
AfaI GTAC 1 cut(s) 40
AgsI TTSAA 2 cut(s) 222, 271
AjnI CCWGG 2 cut(s) 117, 306
AluBI AGCT 1 cut(s) 90
AluI AGCT 1 cut(s) 90
Alw26I GTCTC 1 cut(s) 295
AlwI GGATC 1 cut(s) 298
AoxI GGCC 2 cut(s) 16, 264
ApeKI GCWGC 3 cut(s) 71, 133, 204
ApoI RAATTY 1 cut(s) 326
AsuC2I CCSGG 2 cut(s) 148, 255
AsuHPI GGTGA 1 cut(s) 16
AxyI CCTNAGG 1 cut(s) 34
BanI GGYRCC 1 cut(s) 150
BbvI GCAGC 3 cut(s) 83, 120, 216
BccI CCATC 1 cut(s) 270
BciT130I CCWGG 2 cut(s) 119, 308
BcnI CCSGG 2 cut(s) 148, 255
BcoDI GTCTC 1 cut(s) 295
BfaI CTAG 1 cut(s) 333
BfmI CTRYAG 1 cut(s) 202
BisI GCNGC 4 cut(s) 72, 131, 134, 205
BlsI GCNGC 4 cut(s) 73, 132, 135, 206
Bme1390I CCNGG 4 cut(s) 119, 148, 255, 308
BmiI GGNNCC 1 cut(s) 152
BmrFI CCNGG 4 cut(s) 119, 148, 255, 308
BpmI CTGGAG 1 cut(s) 140
BpuMI CCSGG 2 cut(s) 148, 255
BsaI GGTCTC 1 cut(s) 295
BsaJI CCNNGG 2 cut(s) 253, 361
Bse1I ACTGG 1 cut(s) 298
Bse21I CCTNAGG 1 cut(s) 34
BseBI CCWGG 2 cut(s) 119, 308
BseDI CCNNGG 2 cut(s) 253, 361
BseMII CTCAG 2 cut(s) 41, 114
BseNI ACTGG 1 cut(s) 298
BseXI GCAGC 3 cut(s) 83, 120, 216
BshFI GGCC 2 cut(s) 18, 266
BshNI GGYRCC 1 cut(s) 150
BsiSI CCGG 2 cut(s) 148, 255
BsmAI GTCTC 1 cut(s) 295
BsmI GAATGC 2 cut(s) 95, 340
BsnI GGCC 2 cut(s) 18, 266
Bso31I GGTCTC 1 cut(s) 295
Bsp143I GATC 2 cut(s) 198, 303
Bsp19I CCATGG 1 cut(s) 361
BspACI CCGC 2 cut(s) 131, 194
BspANI GGCC 2 cut(s) 18, 266
BspCNI CTCAG 2 cut(s) 42, 113
BspLI GGNNCC 1 cut(s) 152
BspMAI CTGCAG 1 cut(s) 206
BspPI GGATC 1 cut(s) 298
BspT107I GGYRCC 1 cut(s) 150
BspTNI GGTCTC 1 cut(s) 295
BsrI ACTGG 1 cut(s) 298
BssECI CCNNGG 2 cut(s) 253, 361
BssMI GATC 2 cut(s) 198, 303
BssT1I CCWWGG 1 cut(s) 361
Bst2UI CCWGG 2 cut(s) 119, 308
Bst4CI ACNGT 1 cut(s) 43
Bst6I CTCTTC 2 cut(s) 26, 244
BstDEI CTNAG 3 cut(s) 34, 50, 100
BstDSI CCRYGG 1 cut(s) 361
BstKTI GATC 2 cut(s) 201, 306
BstMAI GTCTC 1 cut(s) 295
BstMBI GATC 2 cut(s) 198, 303
BstNI CCWGG 2 cut(s) 119, 308
BstSCI CCNGG 4 cut(s) 117, 146, 253, 306
BstSFI CTRYAG 1 cut(s) 202
BstV1I GCAGC 3 cut(s) 83, 120, 216
Bsu36I CCTNAGG 1 cut(s) 34
BsuRI GGCC 2 cut(s) 18, 266
BtgI CCRYGG 1 cut(s) 361
BtsIMutI CAGTG 1 cut(s) 47
Csp6I GTAC 1 cut(s) 39
CviAII CATG 1 cut(s) 362
CviQI GTAC 1 cut(s) 39
DdeI CTNAG 3 cut(s) 34, 50, 100
DpnI GATC 2 cut(s) 200, 305
DpnII GATC 2 cut(s) 198, 303
Eam1104I CTCTTC 2 cut(s) 26, 244
EarI CTCTTC 2 cut(s) 26, 244
Eco130I CCWWGG 1 cut(s) 361
Eco147I AGGCCT 1 cut(s) 18
Eco31I GGTCTC 1 cut(s) 295
Eco57I CTGAAG 1 cut(s) 232
Eco81I CCTNAGG 1 cut(s) 34
EcoRII CCWGG 2 cut(s) 117, 306
EcoT14I CCWWGG 1 cut(s) 361
ErhI CCWWGG 1 cut(s) 361
FaeI CATG 1 cut(s) 365
FaiI YATR 2 cut(s) 68, 363
FatI CATG 1 cut(s) 361
Fnu4HI GCNGC 4 cut(s) 72, 131, 134, 205
Fsp4HI GCNGC 4 cut(s) 72, 131, 134, 205
FspBI CTAG 1 cut(s) 333
GluI GCNGC 4 cut(s) 72, 131, 134, 205
GsuI CTGGAG 1 cut(s) 140
HaeIII GGCC 2 cut(s) 18, 266
HapII CCGG 2 cut(s) 148, 255
Hin1II CATG 1 cut(s) 365
HindIII AAGCTT 1 cut(s) 88
HinfI GANTC 2 cut(s) 55, 112
HpaII CCGG 2 cut(s) 148, 255
HphI GGTGA 1 cut(s) 16
Hpy188III TCNNGA 3 cut(s) 102, 142, 333
HpyAV CCTTC 4 cut(s) 184, 252, 304, 362
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4V TGCA 1 cut(s) 204
HpyF3I CTNAG 3 cut(s) 34, 50, 100
Hsp92II CATG 1 cut(s) 365
Kzo9I GATC 2 cut(s) 198, 303
Lsp1109I GCAGC 3 cut(s) 83, 120, 216
MaeI CTAG 1 cut(s) 333
MaeIII GTNAC 1 cut(s) 43
MalI GATC 2 cut(s) 200, 305
MboI GATC 2 cut(s) 198, 303
MboII GAAGA 5 cut(s) 13, 175, 210, 231, 238
MluCI AATT 2 cut(s) 326, 373
MlyI GAGTC 1 cut(s) 49
MnlI CCTC 8 cut(s) 29, 37, 45, 91, 181, 197, 247, 329
MseI TTAA 1 cut(s) 77
MspA1I CMGCKG 2 cut(s) 133, 196
MspI CCGG 2 cut(s) 148, 255
MspR9I CCNGG 4 cut(s) 119, 148, 255, 308
Mva1269I GAATGC 2 cut(s) 95, 340
MvaI CCWGG 2 cut(s) 119, 308
NciI CCSGG 2 cut(s) 148, 255
NcoI CCATGG 1 cut(s) 361
NdeII GATC 2 cut(s) 198, 303
NlaIII CATG 1 cut(s) 365
NlaIV GGNNCC 1 cut(s) 152
NmuCI GTSAC 1 cut(s) 43
PceI AGGCCT 1 cut(s) 18
PctI GAATGC 2 cut(s) 95, 340
PfeI GAWTC 1 cut(s) 112
PfoI TCCNGGA 1 cut(s) 117
PkrI GCNGC 4 cut(s) 73, 132, 135, 206
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
Psp6I CCWGG 2 cut(s) 117, 306
PspGI CCWGG 2 cut(s) 117, 306
PspN4I GGNNCC 1 cut(s) 152
PstI CTGCAG 1 cut(s) 206
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
SaqAI TTAA 1 cut(s) 77
SatI GCNGC 4 cut(s) 72, 131, 134, 205
Sau3AI GATC 2 cut(s) 198, 303
SchI GAGTC 1 cut(s) 49
ScrFI CCNGG 4 cut(s) 119, 148, 255, 308
SetI ASST 7 cut(s) 29, 40, 83, 92, 233, 239, 263
SfcI CTRYAG 1 cut(s) 202
Sse9I AATT 2 cut(s) 326, 373
SseBI AGGCCT 1 cut(s) 18
SsiI CCGC 2 cut(s) 131, 194
SspMI CTAG 1 cut(s) 333
StuI AGGCCT 1 cut(s) 18
StyD4I CCNGG 4 cut(s) 117, 146, 253, 306
StyI CCWWGG 1 cut(s) 361
TaaI ACNGT 1 cut(s) 43
TaqI TCGA 2 cut(s) 143, 302
TasI AATT 2 cut(s) 326, 373
TauI GCSGC 1 cut(s) 133
TfiI GAWTC 1 cut(s) 112
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TscAI CASTG 1 cut(s) 54
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 3 cut(s) 71, 133, 204
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 1 cut(s) 332
TspRI CASTG 1 cut(s) 54
XapI RAATTY 1 cut(s) 326
XbaI TCTAGA 1 cut(s) 332
XspI CTAG 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.