Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0020546

Physical Location & Seq

Genomic Coordinates Reverse (-)

24416274 .. 24416606

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00020000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGCAGCAAAAAGAATTAACTCATTAATCTTTCTCTTCTTGTTTCTATTGTCGTTCATAGCTGTAATTGTCAGAGCTGAACCTGGTCCGGTAGAAGATGCCTACTGGAAAAAACGTGAAGCCGATGCTCAGAATGTAGCCCAGCAATCTGTTGAACCACATCCGGAGCAAGTGACCGAGGAATTGAATACTAATGTTGGCCAGCTTGTATCAGAGCAAGATAAGCATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0009664 GO:0009987 GO:0016043 GO:0016829 GO:0016835 GO:0016837 GO:0030570 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00040 ko02024 map00040 map02024

Pfam Domains

Protein Families

Pec_lyase_C Pec_lyase_N

Protein Analysis

77

Amino Acids

8.74

Weight (kDa)

5.2

Isoelectric Point (pI)

45.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pec_lyase_N	PF04431	33 - 72	1.4e-09	Pectate lyase, N terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020546)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0060721
rosa_laevigata	RLG00000035393
rosa_roxburghii	Rroxscaffold_1G00020000
rosa_rugosa	Rorug05G0333200
rosa_samantha	Rh5CG432900 Rh5DG423200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	163
AcoI	YGGCCR	1 cut(s)	199
AgsI	TTSAA	2 cut(s)	155, 187
AjnI	CCWGG	1 cut(s)	82
AluBI	AGCT	3 cut(s)	62, 77, 205
AluI	AGCT	3 cut(s)	62, 77, 205
Aor13HI	TCCGGA	1 cut(s)	163
AoxI	GGCC	1 cut(s)	199
ApeKI	GCWGC	1 cut(s)	5
AseI	ATTAAT	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	86
BalI	TGGCCA	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	17
BciT130I	CCWGG	1 cut(s)	84
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	84
Bme18I	GGWCC	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	86
BmrFI	CCNGG	1 cut(s)	84
BmsI	GCATC	2 cut(s)	88, 115
BsaBI	GATNNNNATC	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	177
BsaWI	WCCGGW	2 cut(s)	88, 163
Bse1I	ACTGG	1 cut(s)	110
Bse8I	GATNNNNATC	1 cut(s)	225
BseAI	TCCGGA	1 cut(s)	163
BseBI	CCWGG	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	1 cut(s)	160
BseJI	GATNNNNATC	1 cut(s)	225
BseMII	CTCAG	1 cut(s)	143
BseNI	ACTGG	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	17
BseYI	CCCAGC	1 cut(s)	141
BshFI	GGCC	1 cut(s)	201
BsiSI	CCGG	2 cut(s)	89, 164
BsnI	GGCC	1 cut(s)	201
Bsp13I	TCCGGA	1 cut(s)	163
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	1 cut(s)	142
BspEI	TCCGGA	1 cut(s)	163
BsrI	ACTGG	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	84
Bst6I	CTCTTC	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	203
BstDEI	CTNAG	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	160
BstMWI	GCNNNNNNNGC	1 cut(s)	223
BstNI	CCWGG	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	160
Cac8I	GCNNGC	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	86
CsiI	ACCWGGT	1 cut(s)	82
CviJI	RGCY	6 cut(s)	62, 77, 122, 140, 201, 205
CviKI_1	RGCY	6 cut(s)	62, 77, 122, 140, 201, 205
DdeI	CTNAG	1 cut(s)	129
EaeI	YGGCCR	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	82
FaiI	YATR	1 cut(s)	59
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
GsaI	CCCAGC	1 cut(s)	145
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	2 cut(s)	89, 164
HpaII	CCGG	2 cut(s)	89, 164
Hpy188I	TCNGA	3 cut(s)	74, 132, 214
Hpy188III	TCNNGA	1 cut(s)	164
HpyCH4IV	ACGT	1 cut(s)	115
HpyF10VI	GCNNNNNNNGC	1 cut(s)	223
HpyF3I	CTNAG	1 cut(s)	129
HpySE526I	ACGT	1 cut(s)	115
Kpn2I	TCCGGA	1 cut(s)	163
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	7 cut(s)	69, 91, 96, 102, 155, 177, 215
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	2 cut(s)	88, 115
MabI	ACCWGGT	1 cut(s)	82
MaeII	ACGT	1 cut(s)	115
MaeIII	GTNAC	1 cut(s)	172
MboII	GAAGA	2 cut(s)	28, 107
MlsI	TGGCCA	1 cut(s)	201
MluCI	AATT	3 cut(s)	15, 66, 182
MluNI	TGGCCA	1 cut(s)	201
MnlI	CCTC	1 cut(s)	172
Mox20I	TGGCCA	1 cut(s)	201
MroI	TCCGGA	1 cut(s)	163
MscI	TGGCCA	1 cut(s)	201
MseI	TTAA	2 cut(s)	18, 26
Msp20I	TGGCCA	1 cut(s)	201
MspI	CCGG	2 cut(s)	89, 164
MspR9I	CCNGG	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	223
NmuCI	GTSAC	1 cut(s)	172
PkrI	GCNGC	1 cut(s)	7
PshBI	ATTAAT	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	82
PspFI	CCCAGC	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	82
PspPI	GGNCC	1 cut(s)	86
SaqAI	TTAA	2 cut(s)	18, 26
SatI	GCNGC	1 cut(s)	6
Sau96I	GGNCC	1 cut(s)	86
ScrFI	CCNGG	1 cut(s)	84
SetI	ASST	5 cut(s)	64, 79, 85, 118, 207
SexAI	ACCWGGT	1 cut(s)	82
SfaNI	GCATC	2 cut(s)	88, 115
SinI	GGWCC	1 cut(s)	86
Sse9I	AATT	3 cut(s)	15, 66, 182
StyD4I	CCNGG	1 cut(s)	82
TaiI	ACGT	1 cut(s)	118
TaqII	GACCGA	1 cut(s)	191
TasI	AATT	3 cut(s)	15, 66, 182
Tru1I	TTAA	2 cut(s)	18, 26
Tru9I	TTAA	2 cut(s)	18, 26
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	86
VspI	ATTAAT	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.