Rroxscaffold_1G00030720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0023176
Physical Location & Seq
Reverse (-)
40996561 .. 41009812
13252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00030720.1

Sequence Viewer

Length: 816 bp
ATGGCCACTAAATCATTTCCAAAATGTCCTCGGAAATTCTACGATGATGGTGGATCCATTGATCTAAACTTCGGTTCCATTGGTTCCACTGGTGCCGATGGATCTATCGATCTAACTTTTGGGTCAAGAAAATTGGGGCGAAGGAAGAAGGAAGATCTGGAGTTGGTATTGTTTTTGACTTGGCTACTATTATCTATCAAAAAAACTATTCAGGCCACAAAAAGCTTGGATAAGGGAGTTTTGGATGTGTCTTTAAGCGAGCGGAAGCTTTACCGCTTCTCCATCTCCTCGTCGTCGCTTTGCCCGCACCGGACCCGGCGATTACTTTGGGCACCCACCCAAAGACCGACCCGTTCGGCTTCGTTCTCACATCGGTTCGGCTTCATCTTCGCAAAAGACAGATCGATCCCGTCCGTCTCCCCGGACCGCCTTCGTCGACATCGTTTCACCTCGAAACAAGACCACGAATTCATCCCCAAGACCCCGCCTTTCCTCGTCTGCGAGTCCTCCAAGAACGTCAAGTCTTCACCGACTACGCCCAAGAGATATGCCCGTTTCGGGTTTTCGTTTCGATTCGTGGGAAATGAAGTGGGTCTCTCTGGAATTCAAGAAAGCAAGAACGAAGGCATGGCTGCCGCCGAGAATCTCTTGGATTGGTTCGTAAAGAAGATGGAGGAGTGGGCACCGGAACAAGCTGATATTTATTGGTCTTCCCATAATGCCCACAAGATACTCTACTGGTTTCGGTCTTACGGATCGGGCAGACCAAAATGGGAGCAAGTACTTAATTTGCACACCATGGAATGTGTCCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

271

Amino Acids

31.1

Weight (kDa)

9.95

Isoelectric Point (pI)

46.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023176)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_1G00030720 Rroxscaffold_4G00297300 Rroxscaffold_5G00351260 Rroxscaffold_6G00389390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 92, 331, 682
AccBSI CCGCTC 1 cut(s) 262
AccI GTMKAC 1 cut(s) 436
AciI CCGC 6 cut(s) 262, 274, 305, 427, 485, 636
AclWI GGATC 5 cut(s) 48, 61, 109, 400, 763
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 35, 467, 603
AfaI GTAC 1 cut(s) 783
AfiI CCNNNNNNNGG 1 cut(s) 558
AgsI TTSAA 1 cut(s) 608
AluBI AGCT 3 cut(s) 225, 268, 695
AluI AGCT 3 cut(s) 225, 268, 695
Alw26I GTCTC 2 cut(s) 421, 599
AlwI GGATC 5 cut(s) 48, 61, 109, 400, 763
AoxI GGCC 2 cut(s) 3, 213
ApeKI GCWGC 1 cut(s) 632
ApoI RAATTY 3 cut(s) 35, 467, 603
AspS9I GGNCC 2 cut(s) 312, 424
AsuC2I CCSGG 2 cut(s) 316, 422
AsuHPI GGTGA 2 cut(s) 439, 519
AvaII GGWCC 2 cut(s) 312, 424
BaeGI GKGCMC 2 cut(s) 334, 685
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 53
BanI GGYRCC 3 cut(s) 92, 331, 682
BbsI GAAGAC 2 cut(s) 516, 702
BbvI GCAGC 1 cut(s) 619
BccI CCATC 4 cut(s) 41, 92, 290, 664
BcnI CCSGG 2 cut(s) 316, 422
BcoDI GTCTC 2 cut(s) 421, 599
BglII AGATCT 1 cut(s) 154
BisI GCNGC 2 cut(s) 633, 636
BlsI GCNGC 2 cut(s) 634, 637
BmcAI AGTACT 1 cut(s) 783
Bme1390I CCNGG 2 cut(s) 316, 422
Bme18I GGWCC 2 cut(s) 312, 424
BmgT120I GGNCC 2 cut(s) 312, 424
BmiI GGNNCC 7 cut(s) 55, 76, 85, 94, 314, 333, 684
BmrFI CCNGG 2 cut(s) 316, 422
BpiI GAAGAC 2 cut(s) 516, 702
BpmI CTGGAG 1 cut(s) 179
BpuMI CCSGG 2 cut(s) 316, 422
Bsa29I ATCGAT 2 cut(s) 108, 404
BsaI GGTCTC 1 cut(s) 599
BsaJI CCNNGG 3 cut(s) 29, 420, 798
BsaWI WCCGGW 2 cut(s) 309, 685
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bsc4I CCNNNNNNNGG 1 cut(s) 558
Bse1I ACTGG 2 cut(s) 94, 743
BseCI ATCGAT 2 cut(s) 108, 404
BseDI CCNNGG 3 cut(s) 29, 420, 798
BseGI GGATG 2 cut(s) 250, 471
BseLI CCNNNNNNNGG 1 cut(s) 558
BseNI ACTGG 2 cut(s) 94, 743
BseRI GAGGAG 2 cut(s) 277, 689
BseSI GKGCMC 2 cut(s) 334, 685
BseXI GCAGC 1 cut(s) 619
BshFI GGCC 2 cut(s) 5, 215
BshNI GGYRCC 3 cut(s) 92, 331, 682
BshVI ATCGAT 2 cut(s) 108, 404
BsiSI CCGG 4 cut(s) 310, 316, 422, 686
BslI CCNNNNNNNGG 1 cut(s) 558
BsmAI GTCTC 2 cut(s) 421, 599
BsmBI CGTCTC 1 cut(s) 421
BsnI GGCC 2 cut(s) 5, 215
Bso31I GGTCTC 1 cut(s) 599
Bsp1286I GDGCHC 2 cut(s) 334, 685
Bsp143I GATC 8 cut(s) 53, 61, 101, 109, 154, 401, 405, 755
Bsp19I CCATGG 1 cut(s) 798
BspACI CCGC 6 cut(s) 262, 274, 305, 427, 485, 636
BspANI GGCC 2 cut(s) 5, 215
BspDI ATCGAT 2 cut(s) 108, 404
BspLI GGNNCC 7 cut(s) 55, 76, 85, 94, 314, 333, 684
BspPI GGATC 5 cut(s) 48, 61, 109, 400, 763
BspT107I GGYRCC 3 cut(s) 92, 331, 682
BspTNI GGTCTC 1 cut(s) 599
BsrBI CCGCTC 1 cut(s) 262
BsrI ACTGG 2 cut(s) 94, 743
BssECI CCNNGG 3 cut(s) 29, 420, 798
BssMI GATC 8 cut(s) 53, 61, 101, 109, 154, 401, 405, 755
BssT1I CCWWGG 1 cut(s) 798
BstC8I GCNNGC 2 cut(s) 260, 305
BstDSI CCRYGG 1 cut(s) 798
BstF5I GGATG 2 cut(s) 250, 471
BstKTI GATC 8 cut(s) 56, 64, 104, 112, 157, 404, 408, 758
BstMAI GTCTC 2 cut(s) 421, 599
BstMBI GATC 8 cut(s) 53, 61, 101, 109, 154, 401, 405, 755
BstMWI GCNNNNNNNGC 1 cut(s) 304
BstSCI CCNGG 2 cut(s) 314, 420
BstSLI GKGCMC 2 cut(s) 334, 685
BstV1I GCAGC 1 cut(s) 619
BstV2I GAAGAC 2 cut(s) 516, 702
BstX2I RGATCY 3 cut(s) 53, 101, 154
BstYI RGATCY 3 cut(s) 53, 101, 154
Bsu15I ATCGAT 2 cut(s) 108, 404
BsuRI GGCC 2 cut(s) 5, 215
BsuTUI ATCGAT 2 cut(s) 108, 404
BtgI CCRYGG 1 cut(s) 798
BtsCI GGATG 2 cut(s) 250, 471
BtsIMutI CAGTG 1 cut(s) 87
Cac8I GCNNGC 2 cut(s) 260, 305
Cfr13I GGNCC 2 cut(s) 312, 424
ClaI ATCGAT 2 cut(s) 108, 404
CpoI CGGWCCG 1 cut(s) 424
Csp6I GTAC 1 cut(s) 782
CspI CGGWCCG 1 cut(s) 424
CviAII CATG 2 cut(s) 628, 799
CviJI RGCY 9 cut(s) 5, 184, 215, 225, 268, 359, 381, 632, 695
CviKI_1 RGCY 9 cut(s) 5, 184, 215, 225, 268, 359, 381, 632, 695
CviQI GTAC 1 cut(s) 782
DpnI GATC 8 cut(s) 55, 63, 103, 111, 156, 403, 407, 757
DpnII GATC 8 cut(s) 53, 61, 101, 109, 154, 401, 405, 755
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 798
Eco31I GGTCTC 1 cut(s) 599
Eco47I GGWCC 2 cut(s) 312, 424
EcoRI GAATTC 2 cut(s) 467, 603
EcoT14I CCWWGG 1 cut(s) 798
ErhI CCWWGG 1 cut(s) 798
Esp3I CGTCTC 1 cut(s) 421
FaeI CATG 2 cut(s) 631, 802
FaiI YATR 4 cut(s) 549, 629, 717, 800
FatI CATG 2 cut(s) 627, 798
FauI CCCGC 2 cut(s) 312, 492
FblI GTMKAC 1 cut(s) 436
Fnu4HI GCNGC 2 cut(s) 633, 636
FokI GGATG 2 cut(s) 257, 458
Fsp4HI GCNGC 2 cut(s) 633, 636
GluI GCNGC 2 cut(s) 633, 636
GsuI CTGGAG 1 cut(s) 179
HaeIII GGCC 2 cut(s) 5, 215
HapII CCGG 4 cut(s) 310, 316, 422, 686
Hin1II CATG 2 cut(s) 631, 802
HincII GTYRAC 1 cut(s) 437
HindII GTYRAC 1 cut(s) 437
HindIII AAGCTT 2 cut(s) 223, 266
HinfI GANTC 3 cut(s) 503, 573, 643
HpaII CCGG 4 cut(s) 310, 316, 422, 686
HphI GGTGA 2 cut(s) 439, 519
Hpy166II GTNNAC 1 cut(s) 437
Hpy188I TCNGA 2 cut(s) 33, 812
Hpy188III TCNNGA 4 cut(s) 126, 158, 600, 608
Hpy8I GTNNAC 1 cut(s) 437
Hpy99I CGWCG 3 cut(s) 295, 298, 438
HpyAV CCTTC 4 cut(s) 135, 142, 440, 617
HpyCH4IV ACGT 1 cut(s) 516
HpyCH4V TGCA 1 cut(s) 793
HpyF10VI GCNNNNNNNGC 1 cut(s) 304
HpySE526I ACGT 1 cut(s) 516
Hsp92II CATG 2 cut(s) 631, 802
Kzo9I GATC 8 cut(s) 53, 61, 101, 109, 154, 401, 405, 755
LmnI GCTCC 1 cut(s) 775
LpnPI CCDG 9 cut(s) 75, 143, 197, 323, 329, 435, 585, 699, 724
Lsp1109I GCAGC 1 cut(s) 619
MaeII ACGT 1 cut(s) 516
MalI GATC 8 cut(s) 55, 63, 103, 111, 156, 403, 407, 757
MbiI CCGCTC 1 cut(s) 262
MboI GATC 8 cut(s) 53, 61, 101, 109, 154, 401, 405, 755
MboII GAAGA 6 cut(s) 157, 164, 379, 516, 679, 702
MflI RGATCY 3 cut(s) 53, 101, 154
MhlI GDGCHC 2 cut(s) 334, 685
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 35, 131, 467, 603, 787
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 512
MnlI CCTC 6 cut(s) 39, 298, 460, 503, 517, 667
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 254, 786
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 4 cut(s) 310, 316, 422, 686
MspR9I CCNGG 2 cut(s) 316, 422
MwoI GCNNNNNNNGC 1 cut(s) 304
NciI CCSGG 2 cut(s) 316, 422
NcoI CCATGG 1 cut(s) 798
NdeII GATC 8 cut(s) 53, 61, 101, 109, 154, 401, 405, 755
NlaIII CATG 2 cut(s) 631, 802
NlaIV GGNNCC 7 cut(s) 55, 76, 85, 94, 314, 333, 684
NmeAIII GCCGAG 1 cut(s) 664
PcsI WCGNNNNNNNCGW 1 cut(s) 439
PfeI GAWTC 2 cut(s) 573, 643
PkrI GCNGC 2 cut(s) 634, 637
PleI GAGTC 1 cut(s) 511
PpsI GAGTC 1 cut(s) 511
PspN4I GGNNCC 7 cut(s) 55, 76, 85, 94, 314, 333, 684
PspPI GGNCC 2 cut(s) 312, 424
PsuI RGATCY 3 cut(s) 53, 101, 154
RsaI GTAC 1 cut(s) 783
RsaNI GTAC 1 cut(s) 782
Rsr2I CGGWCCG 1 cut(s) 424
RsrII CGGWCCG 1 cut(s) 424
SalI GTCGAC 1 cut(s) 435
SaqAI TTAA 2 cut(s) 254, 786
SatI GCNGC 2 cut(s) 633, 636
Sau3AI GATC 8 cut(s) 53, 61, 101, 109, 154, 401, 405, 755
Sau96I GGNCC 2 cut(s) 312, 424
ScaI AGTACT 1 cut(s) 783
SchI GAGTC 1 cut(s) 512
ScrFI CCNGG 2 cut(s) 316, 422
SduI GDGCHC 2 cut(s) 334, 685
SetI ASST 5 cut(s) 227, 270, 452, 519, 697
SinI GGWCC 2 cut(s) 312, 424
Sse9I AATT 5 cut(s) 35, 131, 467, 603, 787
SsiI CCGC 6 cut(s) 262, 274, 305, 427, 485, 636
StyD4I CCNGG 2 cut(s) 314, 420
StyI CCWWGG 1 cut(s) 798
TaiI ACGT 1 cut(s) 519
TaqI TCGA 5 cut(s) 108, 404, 436, 452, 571
TaqII GACCGA 2 cut(s) 361, 735
TasI AATT 5 cut(s) 35, 131, 467, 603, 787
TatI WGTACW 1 cut(s) 781
TauI GCSGC 1 cut(s) 638
TfiI GAWTC 2 cut(s) 573, 643
Tru1I TTAA 2 cut(s) 254, 786
Tru9I TTAA 2 cut(s) 254, 786
TscAI CASTG 1 cut(s) 94
TseI GCWGC 1 cut(s) 632
TspDTI ATGAA 3 cut(s) 373, 460, 600
TspGWI ACGGA 2 cut(s) 403, 768
TspRI CASTG 1 cut(s) 94
VpaK11BI GGWCC 2 cut(s) 312, 424
XapI RAATTY 3 cut(s) 35, 467, 603
XcmI CCANNNNNNNNNTGG 1 cut(s) 223
XmiI GTMKAC 1 cut(s) 436
ZrmI AGTACT 1 cut(s) 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.