Cinnamoyl-CoA reductase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_roxburghii | Rroxscaffold_1G00030720 Rroxscaffold_4G00297300 Rroxscaffold_5G00351260 Rroxscaffold_6G00389390 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 656 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 270 |
| AciI | CCGC | 9 cut(s) | 290, 299, 311, 314, 571, 759, 774, 777, 930 |
| AclWI | GGATC | 1 cut(s) | 45 |
| AcoI | YGGCCR | 2 cut(s) | 275, 513 |
| AfaI | GTAC | 3 cut(s) | 65, 804, 840 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 270, 958 |
| AgsI | TTSAA | 5 cut(s) | 110, 499, 845, 943, 1132 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 869, 901 |
| AluBI | AGCT | 5 cut(s) | 186, 407, 455, 636, 851 |
| AluI | AGCT | 5 cut(s) | 186, 407, 455, 636, 851 |
| Alw26I | GTCTC | 3 cut(s) | 244, 526, 572 |
| AlwI | GGATC | 1 cut(s) | 45 |
| Ama87I | CYCGRG | 1 cut(s) | 204 |
| AoxI | GGCC | 4 cut(s) | 275, 513, 953, 980 |
| ApeKI | GCWGC | 1 cut(s) | 617 |
| AseI | ATTAAT | 1 cut(s) | 1080 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 199, 503 |
| AspLEI | GCGC | 1 cut(s) | 530 |
| AspS9I | GGNCC | 3 cut(s) | 954, 981, 1031 |
| AsuHPI | GGTGA | 1 cut(s) | 910 |
| AvaI | CYCGRG | 1 cut(s) | 204 |
| AvaII | GGWCC | 1 cut(s) | 1031 |
| BalI | TGGCCA | 1 cut(s) | 277 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 822, 854 |
| BauI | CACGAG | 1 cut(s) | 594 |
| BbsI | GAAGAC | 1 cut(s) | 335 |
| BbvI | GCAGC | 1 cut(s) | 604 |
| BccI | CCATC | 3 cut(s) | 116, 185, 1022 |
| BceAI | ACGGC | 2 cut(s) | 500, 1034 |
| BcoDI | GTCTC | 3 cut(s) | 244, 526, 572 |
| BfaI | CTAG | 3 cut(s) | 452, 525, 795 |
| BfoI | RGCGCY | 1 cut(s) | 531 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 579 |
| BisI | GCNGC | 5 cut(s) | 299, 312, 618, 775, 930 |
| BlsI | GCNGC | 5 cut(s) | 300, 313, 619, 776, 931 |
| BmcAI | AGTACT | 2 cut(s) | 65, 840 |
| Bme18I | GGWCC | 1 cut(s) | 1031 |
| BmeT110I | CYCGRG | 1 cut(s) | 204 |
| BmgT120I | GGNCC | 3 cut(s) | 954, 981, 1031 |
| BmiI | GGNNCC | 4 cut(s) | 202, 297, 541, 667 |
| BmsI | GCATC | 3 cut(s) | 387, 712, 761 |
| BpiI | GAAGAC | 1 cut(s) | 335 |
| BpmI | CTGGAG | 1 cut(s) | 627 |
| BpuEI | CTTGAG | 1 cut(s) | 715 |
| BsaI | GGTCTC | 2 cut(s) | 526, 572 |
| BsaJI | CCNNGG | 6 cut(s) | 80, 101, 305, 516, 661, 957 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 270, 958 |
| Bse118I | RCCGGY | 3 cut(s) | 578, 599, 951 |
| BseDI | CCNNGG | 6 cut(s) | 80, 101, 305, 516, 661, 957 |
| BseGI | GGATG | 6 cut(s) | 127, 196, 776, 979, 1033, 1149 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 270, 958 |
| BseXI | GCAGC | 1 cut(s) | 604 |
| BshFI | GGCC | 4 cut(s) | 277, 515, 955, 982 |
| BsiHKCI | CYCGRG | 1 cut(s) | 204 |
| BsiSI | CCGG | 5 cut(s) | 543, 579, 600, 737, 952 |
| BslFI | GGGAC | 1 cut(s) | 783 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 270, 958 |
| BsmAI | GTCTC | 3 cut(s) | 244, 526, 572 |
| BsmBI | CGTCTC | 1 cut(s) | 244 |
| BsmFI | GGGAC | 1 cut(s) | 783 |
| BsnI | GGCC | 4 cut(s) | 277, 515, 955, 982 |
| Bso31I | GGTCTC | 2 cut(s) | 526, 572 |
| BsoBI | CYCGRG | 1 cut(s) | 204 |
| Bsp143I | GATC | 2 cut(s) | 37, 721 |
| Bsp19I | CCATGG | 2 cut(s) | 80, 661 |
| BspACI | CCGC | 9 cut(s) | 290, 299, 311, 314, 571, 759, 774, 777, 930 |
| BspANI | GGCC | 4 cut(s) | 277, 515, 955, 982 |
| BspLI | GGNNCC | 4 cut(s) | 202, 297, 541, 667 |
| BspPI | GGATC | 1 cut(s) | 45 |
| BspQI | GCTCTTC | 1 cut(s) | 126 |
| BspTNI | GGTCTC | 2 cut(s) | 526, 572 |
| BsrFI | RCCGGY | 3 cut(s) | 578, 599, 951 |
| BssAI | RCCGGY | 3 cut(s) | 578, 599, 951 |
| BssECI | CCNNGG | 6 cut(s) | 80, 101, 305, 516, 661, 957 |
| BssMI | GATC | 2 cut(s) | 37, 721 |
| BssSI | CACGAG | 1 cut(s) | 594 |
| BssT1I | CCWWGG | 3 cut(s) | 80, 661, 957 |
| Bst2BI | CACGAG | 1 cut(s) | 594 |
| Bst4CI | ACNGT | 2 cut(s) | 306, 670 |
| Bst6I | CTCTTC | 3 cut(s) | 126, 213, 896 |
| BstC8I | GCNNGC | 2 cut(s) | 580, 1107 |
| BstDSI | CCRYGG | 4 cut(s) | 80, 305, 516, 661 |
| BstF5I | GGATG | 6 cut(s) | 127, 196, 776, 979, 1033, 1149 |
| BstH2I | RGCGCY | 1 cut(s) | 531 |
| BstHHI | GCGC | 1 cut(s) | 530 |
| BstKTI | GATC | 2 cut(s) | 40, 724 |
| BstMAI | GTCTC | 3 cut(s) | 244, 526, 572 |
| BstMBI | GATC | 2 cut(s) | 37, 721 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 317, 579, 871 |
| BstNSI | RCATGY | 1 cut(s) | 1105 |
| BstV1I | GCAGC | 1 cut(s) | 604 |
| BstV2I | GAAGAC | 1 cut(s) | 335 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 285 |
| BsuRI | GGCC | 4 cut(s) | 277, 515, 955, 982 |
| BtgI | CCRYGG | 4 cut(s) | 80, 305, 516, 661 |
| BtsCI | GGATG | 6 cut(s) | 127, 196, 776, 979, 1033, 1149 |
| Cac8I | GCNNGC | 2 cut(s) | 580, 1107 |
| CfoI | GCGC | 1 cut(s) | 530 |
| Cfr10I | RCCGGY | 3 cut(s) | 578, 599, 951 |
| Cfr13I | GGNCC | 3 cut(s) | 954, 981, 1031 |
| CseI | GACGC | 1 cut(s) | 264 |
| Csp6I | GTAC | 3 cut(s) | 64, 803, 839 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 98, 133 |
| CviAII | CATG | 5 cut(s) | 81, 372, 662, 788, 1102 |
| CviQI | GTAC | 3 cut(s) | 64, 803, 839 |
| DpnI | GATC | 2 cut(s) | 39, 723 |
| DpnII | GATC | 2 cut(s) | 37, 721 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 656 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 656 |
| EaeI | YGGCCR | 2 cut(s) | 275, 513 |
| Eam1104I | CTCTTC | 3 cut(s) | 126, 213, 896 |
| EarI | CTCTTC | 3 cut(s) | 126, 213, 896 |
| EciI | GGCGGA | 1 cut(s) | 560 |
| Eco130I | CCWWGG | 3 cut(s) | 80, 661, 957 |
| Eco31I | GGTCTC | 2 cut(s) | 526, 572 |
| Eco47I | GGWCC | 1 cut(s) | 1031 |
| Eco88I | CYCGRG | 1 cut(s) | 204 |
| EcoT14I | CCWWGG | 3 cut(s) | 80, 661, 957 |
| ErhI | CCWWGG | 3 cut(s) | 80, 661, 957 |
| Esp3I | CGTCTC | 1 cut(s) | 244 |
| FaeI | CATG | 5 cut(s) | 84, 375, 665, 791, 1105 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 330, 362 |
| FaqI | GGGAC | 1 cut(s) | 783 |
| FatI | CATG | 5 cut(s) | 80, 371, 661, 787, 1101 |
| Fnu4HI | GCNGC | 5 cut(s) | 299, 312, 618, 775, 930 |
| FokI | GGATG | 6 cut(s) | 134, 203, 783, 986, 1040, 1156 |
| Fsp4HI | GCNGC | 5 cut(s) | 299, 312, 618, 775, 930 |
| FspBI | CTAG | 3 cut(s) | 452, 525, 795 |
| GlaI | GCGC | 1 cut(s) | 529 |
| GluI | GCNGC | 5 cut(s) | 299, 312, 618, 775, 930 |
| GsuI | CTGGAG | 1 cut(s) | 627 |
| HaeII | RGCGCY | 1 cut(s) | 531 |
| HaeIII | GGCC | 4 cut(s) | 277, 515, 955, 982 |
| HapII | CCGG | 5 cut(s) | 543, 579, 600, 737, 952 |
| HgaI | GACGC | 1 cut(s) | 264 |
| HhaI | GCGC | 1 cut(s) | 530 |
| Hin1II | CATG | 5 cut(s) | 84, 375, 665, 791, 1105 |
| Hin6I | GCGC | 1 cut(s) | 528 |
| HinP1I | GCGC | 1 cut(s) | 528 |
| HindIII | AAGCTT | 1 cut(s) | 634 |
| HinfI | GANTC | 3 cut(s) | 322, 368, 746 |
| HpaII | CCGG | 5 cut(s) | 543, 579, 600, 737, 952 |
| HphI | GGTGA | 1 cut(s) | 910 |
| Hpy166II | GTNNAC | 1 cut(s) | 398 |
| Hpy188I | TCNGA | 2 cut(s) | 94, 674 |
| Hpy188III | TCNNGA | 6 cut(s) | 204, 556, 606, 647, 707, 768 |
| Hpy8I | GTNNAC | 1 cut(s) | 398 |
| Hpy99I | CGWCG | 2 cut(s) | 258, 674 |
| HpyAV | CCTTC | 4 cut(s) | 396, 541, 556, 850 |
| HpyCH4III | ACNGT | 2 cut(s) | 306, 670 |
| HpyCH4V | TGCA | 1 cut(s) | 378 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 317, 579, 871 |
| Hsp92II | CATG | 5 cut(s) | 84, 375, 665, 791, 1105 |
| HspAI | GCGC | 1 cut(s) | 528 |
| KroI | GCCGGC | 1 cut(s) | 578 |
| KroNI | GCCGGC | 1 cut(s) | 580 |
| Kzo9I | GATC | 2 cut(s) | 37, 721 |
| LguI | GCTCTTC | 1 cut(s) | 126 |
| LmnI | GCTCC | 3 cut(s) | 57, 295, 545 |
| LpnPI | CCDG | 9 cut(s) | 6, 417, 556, 591, 592, 613, 750, 861, 965 |
| Lsp1109I | GCAGC | 1 cut(s) | 604 |
| LweI | GCATC | 3 cut(s) | 387, 712, 761 |
| MaeI | CTAG | 3 cut(s) | 452, 525, 795 |
| MaeIII | GTNAC | 2 cut(s) | 817, 1052 |
| MalI | GATC | 2 cut(s) | 39, 723 |
| MboI | GATC | 2 cut(s) | 37, 721 |
| MboII | GAAGA | 9 cut(s) | 143, 227, 230, 335, 450, 453, 571, 631, 913 |
| MlsI | TGGCCA | 1 cut(s) | 277 |
| MluCI | AATT | 8 cut(s) | 69, 111, 195, 267, 493, 762, 1077, 1174 |
| MluNI | TGGCCA | 1 cut(s) | 277 |
| MmeI | TCCRAC | 4 cut(s) | 150, 156, 190, 652 |
| MnlI | CCTC | 3 cut(s) | 96, 602, 1044 |
| Mox20I | TGGCCA | 1 cut(s) | 277 |
| MroNI | GCCGGC | 1 cut(s) | 578 |
| MroXI | GAANNNNTTC | 2 cut(s) | 199, 503 |
| MscI | TGGCCA | 1 cut(s) | 277 |
| MseI | TTAA | 7 cut(s) | 68, 354, 867, 1080, 1122, 1158, 1173 |
| MslI | CAYNNNNRTG | 1 cut(s) | 283 |
| Msp20I | TGGCCA | 1 cut(s) | 277 |
| MspA1I | CMGCKG | 2 cut(s) | 851, 932 |
| MspI | CCGG | 5 cut(s) | 543, 579, 600, 737, 952 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 317, 579, 871 |
| NaeI | GCCGGC | 1 cut(s) | 580 |
| NcoI | CCATGG | 2 cut(s) | 80, 661 |
| NdeII | GATC | 2 cut(s) | 37, 721 |
| NgoMIV | GCCGGC | 1 cut(s) | 578 |
| NlaIII | CATG | 5 cut(s) | 84, 375, 665, 791, 1105 |
| NlaIV | GGNNCC | 4 cut(s) | 202, 297, 541, 667 |
| NmeAIII | GCCGAG | 2 cut(s) | 126, 599 |
| NmuCI | GTSAC | 1 cut(s) | 1052 |
| NspI | RCATGY | 1 cut(s) | 1105 |
| PciSI | GCTCTTC | 1 cut(s) | 126 |
| PdiI | GCCGGC | 1 cut(s) | 580 |
| PdmI | GAANNNNTTC | 2 cut(s) | 199, 503 |
| PfeI | GAWTC | 3 cut(s) | 322, 368, 746 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 270 |
| PkrI | GCNGC | 5 cut(s) | 300, 313, 619, 776, 931 |
| PshBI | ATTAAT | 1 cut(s) | 1080 |
| PspN4I | GGNNCC | 4 cut(s) | 202, 297, 541, 667 |
| PspPI | GGNCC | 3 cut(s) | 954, 981, 1031 |
| PvuII | CAGCTG | 1 cut(s) | 851 |
| RsaI | GTAC | 3 cut(s) | 65, 804, 840 |
| RsaNI | GTAC | 3 cut(s) | 64, 803, 839 |
| RseI | CAYNNNNRTG | 1 cut(s) | 283 |
| SapI | GCTCTTC | 1 cut(s) | 126 |
| SaqAI | TTAA | 7 cut(s) | 68, 354, 867, 1080, 1122, 1158, 1173 |
| SatI | GCNGC | 5 cut(s) | 299, 312, 618, 775, 930 |
| Sau3AI | GATC | 2 cut(s) | 37, 721 |
| Sau96I | GGNCC | 3 cut(s) | 954, 981, 1031 |
| ScaI | AGTACT | 2 cut(s) | 65, 840 |
| SfaNI | GCATC | 3 cut(s) | 387, 712, 761 |
| SinI | GGWCC | 1 cut(s) | 1031 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 283 |
| SmlI | CTYRAG | 1 cut(s) | 694 |
| SmoI | CTYRAG | 1 cut(s) | 694 |
| Sse9I | AATT | 8 cut(s) | 69, 111, 195, 267, 493, 762, 1077, 1174 |
| SsiI | CCGC | 9 cut(s) | 290, 299, 311, 314, 571, 759, 774, 777, 930 |
| SspI | AATATT | 1 cut(s) | 1139 |
| SspMI | CTAG | 3 cut(s) | 452, 525, 795 |
| StyI | CCWWGG | 3 cut(s) | 80, 661, 957 |
| TaaI | ACNGT | 2 cut(s) | 306, 670 |
| TaqI | TCGA | 3 cut(s) | 488, 648, 706 |
| TaqII | GACCGA | 1 cut(s) | 17 |
| TasI | AATT | 8 cut(s) | 69, 111, 195, 267, 493, 762, 1077, 1174 |
| TatI | WGTACW | 2 cut(s) | 63, 838 |
| TauI | GCSGC | 4 cut(s) | 301, 314, 777, 932 |
| TfiI | GAWTC | 3 cut(s) | 322, 368, 746 |
| Tru1I | TTAA | 7 cut(s) | 68, 354, 867, 1080, 1122, 1158, 1173 |
| Tru9I | TTAA | 7 cut(s) | 68, 354, 867, 1080, 1122, 1158, 1173 |
| TseFI | GTSAC | 1 cut(s) | 1052 |
| TseI | GCWGC | 1 cut(s) | 617 |
| Tsp45I | GTSAC | 1 cut(s) | 1052 |
| TspDTI | ATGAA | 4 cut(s) | 144, 523, 538, 990 |
| TspGWI | ACGGA | 2 cut(s) | 50, 1040 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 270 |
| VpaK11BI | GGWCC | 1 cut(s) | 1031 |
| VspI | ATTAAT | 1 cut(s) | 1080 |
| XceI | RCATGY | 1 cut(s) | 1105 |
| XmnI | GAANNNNTTC | 2 cut(s) | 199, 503 |
| XspI | CTAG | 3 cut(s) | 452, 525, 795 |
| ZrmI | AGTACT | 2 cut(s) | 65, 840 |