Rroxscaffold_1G00035300

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0022779
Physical Location & Seq
Reverse (-)
51401775 .. 51403973
2199 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00035300.1

Sequence Viewer

Length: 261 bp
ATGAAGCTGTCATCAGTTAATGCATTACTTGAGGATGCAGAGGAGAAGCAACTTAAAAGATCGAGAGTGTGGGAATGGCTTGACGAGCTTAAAGATGCTCTCTATCATGCTGCGAACCTGCTGGATGACAACAATACTGAAGCTCTACGCCACAAGCTGGAAGAAGATTCTGGAACCAGCAGAACAAGTCAGATGTTCAAGAAATTCTCCAAAACAAAAAGATCTTTTCTCGTTGTTTTCATGCGTTTGAGAAAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

86

Amino Acids

10.2

Weight (kDa)

9.34

Isoelectric Point (pI)

60.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 2 - 61 3.5e-13 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022779)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0045911
rosa_roxburghii Rroxscaffold_1G00035300 Rroxscaffold_1G00036380
rosa_samantha Rh5DG326000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 126
AccB7I CCANNNNNTGG 1 cut(s) 157
AcsI RAATTY 1 cut(s) 203
AcuI CTGAAG 1 cut(s) 159
AfiI CCNNNNNNNGG 1 cut(s) 157
AgsI TTSAA 1 cut(s) 199
AluBI AGCT 4 cut(s) 7, 88, 143, 157
AluI AGCT 4 cut(s) 7, 88, 143, 157
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 1 cut(s) 203
BbvI GCAGC 1 cut(s) 97
BfuAI ACCTGC 1 cut(s) 126
BglII AGATCT 1 cut(s) 221
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 175
BmsI GCATC 2 cut(s) 25, 85
BpuEI CTTGAG 1 cut(s) 50
Bsc4I CCNNNNNNNGG 1 cut(s) 157
BseGI GGATG 2 cut(s) 40, 130
BseLI CCNNNNNNNGG 1 cut(s) 157
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 1 cut(s) 97
BslI CCNNNNNNNGG 1 cut(s) 157
Bsp143I GATC 2 cut(s) 59, 221
BspLI GGNNCC 1 cut(s) 175
BspMI ACCTGC 1 cut(s) 126
BssMI GATC 2 cut(s) 59, 221
BstF5I GGATG 2 cut(s) 40, 130
BstKTI GATC 2 cut(s) 62, 224
BstMBI GATC 2 cut(s) 59, 221
BstMWI GCNNNNNNNGC 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 97
BstX2I RGATCY 1 cut(s) 221
BstYI RGATCY 1 cut(s) 221
BtsCI GGATG 2 cut(s) 40, 130
BveI ACCTGC 1 cut(s) 126
CviAII CATG 2 cut(s) 107, 241
CviJI RGCY 5 cut(s) 7, 79, 88, 143, 157
CviKI_1 RGCY 5 cut(s) 7, 79, 88, 143, 157
DpnI GATC 2 cut(s) 61, 223
DpnII GATC 2 cut(s) 59, 221
Eco57I CTGAAG 1 cut(s) 159
EcoT22I ATGCAT 1 cut(s) 25
FaeI CATG 2 cut(s) 110, 244
FaiI YATR 2 cut(s) 108, 242
FatI CATG 2 cut(s) 106, 240
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 2 cut(s) 47, 137
Fsp4HI GCNGC 1 cut(s) 111
GluI GCNGC 1 cut(s) 111
Hin1II CATG 2 cut(s) 110, 244
HinfI GANTC 1 cut(s) 167
Hpy188I TCNGA 1 cut(s) 192
Hpy188III TCNNGA 3 cut(s) 63, 171, 199
HpyCH4V TGCA 2 cut(s) 23, 38
HpyF10VI GCNNNNNNNGC 1 cut(s) 85
Hsp92II CATG 2 cut(s) 110, 244
Kzo9I GATC 2 cut(s) 59, 221
LpnPI CCDG 5 cut(s) 107, 131, 143, 156, 190
Lsp1109I GCAGC 1 cut(s) 97
LweI GCATC 2 cut(s) 25, 85
MalI GATC 2 cut(s) 61, 223
MboI GATC 2 cut(s) 59, 221
MboII GAAGA 2 cut(s) 173, 176
MflI RGATCY 1 cut(s) 221
MluCI AATT 1 cut(s) 203
MnlI CCTC 2 cut(s) 25, 34
Mph1103I ATGCAT 1 cut(s) 25
MseI TTAA 3 cut(s) 18, 54, 90
MwoI GCNNNNNNNGC 1 cut(s) 85
NdeII GATC 2 cut(s) 59, 221
NlaIII CATG 2 cut(s) 110, 244
NlaIV GGNNCC 1 cut(s) 175
NsiI ATGCAT 1 cut(s) 25
PfeI GAWTC 1 cut(s) 167
PflMI CCANNNNNTGG 1 cut(s) 157
PkrI GCNGC 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 175
PsuI RGATCY 1 cut(s) 221
SaqAI TTAA 3 cut(s) 18, 54, 90
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 2 cut(s) 59, 221
SetI ASST 5 cut(s) 9, 90, 120, 145, 159
SfaNI GCATC 2 cut(s) 25, 85
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 1 cut(s) 203
TaqI TCGA 1 cut(s) 62
TasI AATT 1 cut(s) 203
TfiI GAWTC 1 cut(s) 167
Tru1I TTAA 3 cut(s) 18, 54, 90
Tru9I TTAA 3 cut(s) 18, 54, 90
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 2 cut(s) 17, 229
Van91I CCANNNNNTGG 1 cut(s) 157
XapI RAATTY 1 cut(s) 203
Zsp2I ATGCAT 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.