Rroxscaffold_2G00118180

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0024177
Physical Location & Seq
Forward (+)
49354024 .. 49357506
3483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00118180.1

Sequence Viewer

Length: 624 bp
ATGGACTTCTCATGGATGGTGGGACTTTCTCAAGGGCATGGTGAAGCCTCTGGCCGCCACAGTGGTGGTGCTGCTGGCGGTGGCGCTGTCGCATGTACAGAAGCTGGGTTTGGGTGGCGAGATGGTTTACTCTATTTGCCAGGGCGTTTGTGCAGCTTTCGATTCTTGGGTTTGTTTTGCAGTTCATTTTCACTAAGGATAATGCTATTTGGATCATTCTTGCTTACCTTTTCATGGTCTCTGTTGCTGGCTACACACAGCAGGTCAAGGGCTAAACATGTTCCTAGAGGGAAGTATGCTGCAGGGGCATCAATATTGGTTGGAACTTCAATTACAATGTTCCTTCTTATTGTCCTCAATGTATTTCCCTTCACTCCAAGATATATTATCCCTGTTGCCGGTAAGGTATTCTCCAAGTTAGAATATTCGGATGAATTGTTACTTTCTTTCAAACAAGAGGGTATCTCTAATGAAAAGGCTTTGACATCCAAATGTTTTGTTTTCTTGGGAGCGGTGGCTTCACCTGAGCGTCTCTGCATTGTCACAGAGTTCCTCCCACGTGGAAGTTTGTATCAAATACTACAGAGGAACCCCATCAAAACTAGACTGGAGACGACATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS PAS_9 Pkinase_Tyr

Protein Analysis

207

Amino Acids

22.63

Weight (kDa)

9.53

Isoelectric Point (pI)

32.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024177)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g14820
rosa_roxburghii Rroxscaffold_2G00118180 Rroxscaffold_3G00275240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 252
AccBSI CCGCTC 1 cut(s) 512
AciI CCGC 3 cut(s) 55, 78, 512
AclWI GGATC 1 cut(s) 220
AcoI YGGCCR 1 cut(s) 52
AcvI CACGTG 1 cut(s) 560
AfaI GTAC 1 cut(s) 97
AfiI CCNNNNNNNGG 2 cut(s) 234, 398
AflIII ACRYGT 2 cut(s) 277, 617
AgsI TTSAA 2 cut(s) 330, 451
AjnI CCWGG 1 cut(s) 139
AjuI GAANNNNNNNTTGG 2 cut(s) 93, 125
AleI CACNNNNGTG 1 cut(s) 63
AluBI AGCT 2 cut(s) 104, 156
AluI AGCT 2 cut(s) 104, 156
Alw26I GTCTC 3 cut(s) 243, 536, 605
AlwI GGATC 1 cut(s) 220
AlwNI CAGNNNCTG 1 cut(s) 104
AoxI GGCC 1 cut(s) 52
ApeKI GCWGC 3 cut(s) 71, 153, 299
AspLEI GCGC 1 cut(s) 86
AsuHPI GGTGA 2 cut(s) 53, 513
BbrPI CACGTG 1 cut(s) 560
BbvI GCAGC 3 cut(s) 58, 165, 286
BccI CCATC 3 cut(s) 10, 116, 602
BciT130I CCWGG 1 cut(s) 141
BcoDI GTCTC 3 cut(s) 243, 536, 605
BfaI CTAG 2 cut(s) 285, 603
BfmI CTRYAG 2 cut(s) 300, 581
BfoI RGCGCY 1 cut(s) 87
BfuAI ACCTGC 1 cut(s) 252
BisI GCNGC 4 cut(s) 55, 72, 154, 300
BlsI GCNGC 4 cut(s) 56, 73, 155, 301
Bme1390I CCNGG 1 cut(s) 141
BmiI GGNNCC 1 cut(s) 590
BmrFI CCNGG 1 cut(s) 141
BmsI GCATC 1 cut(s) 317
BplI GAGNNNNNCTC 2 cut(s) 449, 481
Bpu10I CCTNAGC 1 cut(s) 525
BpuEI CTTGAG 1 cut(s) 15
BsaAI YACGTR 1 cut(s) 560
BsaI GGTCTC 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 140
Bsc4I CCNNNNNNNGG 2 cut(s) 234, 398
Bse118I RCCGGY 1 cut(s) 398
Bse1I ACTGG 1 cut(s) 612
BseBI CCWGG 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 140
BseGI GGATG 3 cut(s) 21, 436, 485
BseLI CCNNNNNNNGG 2 cut(s) 234, 398
BseMII CTCAG 1 cut(s) 516
BseNI ACTGG 1 cut(s) 612
BseXI GCAGC 3 cut(s) 58, 165, 286
BseYI CCCAGC 1 cut(s) 104
BsgI GTGCAG 1 cut(s) 172
BshFI GGCC 1 cut(s) 54
BsiSI CCGG 1 cut(s) 399
BslFI GGGAC 1 cut(s) 36
BslI CCNNNNNNNGG 2 cut(s) 234, 398
BsmAI GTCTC 3 cut(s) 243, 536, 605
BsmBI CGTCTC 2 cut(s) 536, 605
BsmFI GGGAC 1 cut(s) 36
BsnI GGCC 1 cut(s) 54
Bso31I GGTCTC 1 cut(s) 243
Bsp1407I TGTACA 1 cut(s) 95
Bsp143I GATC 1 cut(s) 212
BspACI CCGC 3 cut(s) 55, 78, 512
BspANI GGCC 1 cut(s) 54
BspCNI CTCAG 1 cut(s) 517
BspLI GGNNCC 1 cut(s) 590
BspMAI CTGCAG 1 cut(s) 304
BspMI ACCTGC 1 cut(s) 252
BspPI GGATC 1 cut(s) 220
BspTNI GGTCTC 1 cut(s) 243
BsrBI CCGCTC 1 cut(s) 512
BsrFI RCCGGY 1 cut(s) 398
BsrGI TGTACA 1 cut(s) 95
BsrI ACTGG 1 cut(s) 612
BssAI RCCGGY 1 cut(s) 398
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 1 cut(s) 212
Bst2UI CCWGG 1 cut(s) 141
Bst4CI ACNGT 1 cut(s) 62
BstAUI TGTACA 1 cut(s) 95
BstBAI YACGTR 1 cut(s) 560
BstC8I GCNNGC 2 cut(s) 76, 249
BstDEI CTNAG 2 cut(s) 194, 525
BstF5I GGATG 3 cut(s) 21, 436, 485
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 1 cut(s) 215
BstMAI GTCTC 3 cut(s) 243, 536, 605
BstMBI GATC 1 cut(s) 212
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNI CCWGG 1 cut(s) 141
BstNSI RCATGY 3 cut(s) 96, 281, 621
BstSCI CCNGG 1 cut(s) 139
BstSFI CTRYAG 2 cut(s) 300, 581
BstV1I GCAGC 3 cut(s) 58, 165, 286
BstXI CCANNNNNNTGG 1 cut(s) 65
BsuRI GGCC 1 cut(s) 54
BtsCI GGATG 3 cut(s) 21, 436, 485
BtsIMutI CAGTG 1 cut(s) 67
BveI ACCTGC 1 cut(s) 252
Cac8I GCNNGC 2 cut(s) 76, 249
CaiI CAGNNNCTG 1 cut(s) 104
CfoI GCGC 1 cut(s) 86
Cfr10I RCCGGY 1 cut(s) 398
CseI GACGC 1 cut(s) 518
Csp6I GTAC 1 cut(s) 96
CviAII CATG 6 cut(s) 12, 38, 93, 234, 278, 618
CviJI RGCY 8 cut(s) 47, 54, 104, 156, 251, 272, 479, 518
CviKI_1 RGCY 8 cut(s) 47, 54, 104, 156, 251, 272, 479, 518
CviQI GTAC 1 cut(s) 96
DdeI CTNAG 2 cut(s) 194, 525
DpnI GATC 1 cut(s) 214
DpnII GATC 1 cut(s) 212
EaeI YGGCCR 1 cut(s) 52
Eco31I GGTCTC 1 cut(s) 243
Eco72I CACGTG 1 cut(s) 560
EcoRII CCWGG 1 cut(s) 139
Esp3I CGTCTC 2 cut(s) 536, 605
FaeI CATG 6 cut(s) 15, 41, 96, 237, 281, 621
FaiI YATR 8 cut(s) 13, 39, 94, 235, 279, 297, 384, 619
FaqI GGGAC 1 cut(s) 36
FatI CATG 6 cut(s) 11, 37, 92, 233, 277, 617
Fnu4HI GCNGC 4 cut(s) 55, 72, 154, 300
FokI GGATG 3 cut(s) 28, 443, 472
Fsp4HI GCNGC 4 cut(s) 55, 72, 154, 300
FspBI CTAG 2 cut(s) 285, 603
GlaI GCGC 1 cut(s) 85
GluI GCNGC 4 cut(s) 55, 72, 154, 300
GsaI CCCAGC 1 cut(s) 108
HaeII RGCGCY 1 cut(s) 87
HaeIII GGCC 1 cut(s) 54
HapII CCGG 1 cut(s) 399
HgaI GACGC 1 cut(s) 518
HhaI GCGC 1 cut(s) 86
Hin1II CATG 6 cut(s) 15, 41, 96, 237, 281, 621
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HinfI GANTC 1 cut(s) 162
HpaII CCGG 1 cut(s) 399
HphI GGTGA 2 cut(s) 53, 513
Hpy166II GTNNAC 1 cut(s) 128
Hpy188I TCNGA 1 cut(s) 430
Hpy8I GTNNAC 1 cut(s) 128
HpyAV CCTTC 2 cut(s) 353, 379
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4IV ACGT 1 cut(s) 559
HpyCH4V TGCA 4 cut(s) 153, 180, 302, 537
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 2 cut(s) 194, 525
HpySE526I ACGT 1 cut(s) 559
Hsp92II CATG 6 cut(s) 15, 41, 96, 237, 281, 621
HspAI GCGC 1 cut(s) 84
Kzo9I GATC 1 cut(s) 212
LmnI GCTCC 1 cut(s) 509
Lsp1109I GCAGC 3 cut(s) 58, 165, 286
LweI GCATC 1 cut(s) 317
MaeI CTAG 2 cut(s) 285, 603
MaeII ACGT 1 cut(s) 559
MaeIII GTNAC 2 cut(s) 438, 541
MalI GATC 1 cut(s) 214
MbiI CCGCTC 1 cut(s) 512
MboI GATC 1 cut(s) 212
MluCI AATT 2 cut(s) 330, 434
MmeI TCCRAC 1 cut(s) 301
MnlI CCTC 6 cut(s) 58, 281, 365, 451, 563, 579
MseI TTAA 1 cut(s) 622
MslI CAYNNNNRTG 2 cut(s) 63, 490
MspI CCGG 1 cut(s) 399
MspR9I CCNGG 1 cut(s) 141
MvaI CCWGG 1 cut(s) 141
MwoI GCNNNNNNNGC 1 cut(s) 305
NdeII GATC 1 cut(s) 212
NlaIII CATG 6 cut(s) 15, 41, 96, 237, 281, 621
NlaIV GGNNCC 1 cut(s) 590
NmuCI GTSAC 1 cut(s) 541
NspI RCATGY 3 cut(s) 96, 281, 621
OliI CACNNNNGTG 1 cut(s) 63
PciI ACATGT 2 cut(s) 277, 617
PfeI GAWTC 1 cut(s) 162
PkrI GCNGC 4 cut(s) 56, 73, 155, 301
PmaCI CACGTG 1 cut(s) 560
PmlI CACGTG 1 cut(s) 560
Ppu21I YACGTR 1 cut(s) 560
PscI ACATGT 2 cut(s) 277, 617
Psp6I CCWGG 1 cut(s) 139
PspCI CACGTG 1 cut(s) 560
PspFI CCCAGC 1 cut(s) 104
PspGI CCWGG 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 590
PsrI GAACNNNNNNTAC 2 cut(s) 316, 348
PstI CTGCAG 1 cut(s) 304
PstNI CAGNNNCTG 1 cut(s) 104
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
RseI CAYNNNNRTG 2 cut(s) 63, 490
SaqAI TTAA 1 cut(s) 622
SatI GCNGC 4 cut(s) 55, 72, 154, 300
Sau3AI GATC 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 141
SetI ASST 7 cut(s) 106, 158, 230, 266, 408, 526, 562
SfaNI GCATC 1 cut(s) 317
SfcI CTRYAG 2 cut(s) 300, 581
SmiMI CAYNNNNRTG 2 cut(s) 63, 490
SmlI CTYRAG 1 cut(s) 30
SmoI CTYRAG 1 cut(s) 30
Sse9I AATT 2 cut(s) 330, 434
SsiI CCGC 3 cut(s) 55, 78, 512
SspI AATATT 2 cut(s) 315, 425
SspMI CTAG 2 cut(s) 285, 603
StyD4I CCNGG 1 cut(s) 139
TaaI ACNGT 1 cut(s) 62
TaiI ACGT 1 cut(s) 562
TaqI TCGA 1 cut(s) 160
TasI AATT 2 cut(s) 330, 434
TatI WGTACW 1 cut(s) 95
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 1 cut(s) 162
Tru1I TTAA 1 cut(s) 622
Tru9I TTAA 1 cut(s) 622
TscAI CASTG 1 cut(s) 67
TseFI GTSAC 1 cut(s) 541
TseI GCWGC 3 cut(s) 71, 153, 299
Tsp45I GTSAC 1 cut(s) 541
TspDTI ATGAA 4 cut(s) 174, 222, 447, 486
TspRI CASTG 1 cut(s) 67
XceI RCATGY 3 cut(s) 96, 281, 621
XspI CTAG 2 cut(s) 285, 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.