Rroxscaffold_3G00275240

Protein ALUMINUM SENSITIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0024177
Physical Location & Seq
Reverse (-)
66742468 .. 66746054
3587 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00275240.1

Sequence Viewer

Length: 591 bp
ATGGCATCATCATCGTCATCACTTTTCTCCTCCACCACGCAAAACCACACCGCATTACCCCTGTATGCTGACCAGGTTCTTCTTCTTTCGCTTTTTGATACTCTGGGGAAAATGGACTTCTCATGGATGGTGGACTTTCTCAAGGGCATGGTGAAGCCTCTGGCCTCCACAGTGGTGGTGCTGCTGGCGGTGGCGCTGTCGCATGTACAGAAGCTGGGTTTGGGTGGCGAGATGGTTTACTCTATTGCCAGGGCGTTTGTGCAGCTTTCGATTTTTGGGTTTGTTTTGCAGTTCATTTTCACTAAGGATAATGCTATTTGGATCATTCTTGCTTACCTTTTCATGGTCTCTGTTGCTGGCTACACAGCAGGTCAAAGGGCTAAACATGTTCCTAGAGGGAAGTATGTTGCAGGGGCATCAATATTGGTTGTAACTTCAATTACAATGTTCCTTCTTATTGTCCTCAATGTATTTCCCTTCACTCCAAGATATATTATCCCTGTTGCCGGTAAGGTATTCTCCAAGTTAGAATATTCGGATGAATTGTTACTTTCTTTCAAACAAGAGGTATCTATAATGAAAAGGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0014

Protein Analysis

196

Amino Acids

21.65

Weight (kDa)

9.58

Isoelectric Point (pI)

19.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0014 PF03649 55 - 174 6.3e-25 Uncharacterised protein family (UPF0014)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024177)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g14820
rosa_roxburghii Rroxscaffold_2G00118180 Rroxscaffold_3G00275240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 359
AciI CCGC 2 cut(s) 51, 188
AclWI GGATC 1 cut(s) 329
AfaI GTAC 1 cut(s) 207
AfiI CCNNNNNNNGG 2 cut(s) 343, 506
AflIII ACRYGT 1 cut(s) 385
AgsI TTSAA 2 cut(s) 438, 559
AjnI CCWGG 2 cut(s) 72, 248
AjuI GAANNNNNNNTTGG 2 cut(s) 203, 235
AleI CACNNNNGTG 1 cut(s) 173
AluBI AGCT 2 cut(s) 214, 265
AluI AGCT 2 cut(s) 214, 265
Alw26I GTCTC 1 cut(s) 352
AlwI GGATC 1 cut(s) 329
AlwNI CAGNNNCTG 1 cut(s) 214
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 2 cut(s) 181, 262
AspLEI GCGC 1 cut(s) 196
AsuHPI GGTGA 1 cut(s) 163
BbvI GCAGC 2 cut(s) 168, 274
BccI CCATC 2 cut(s) 121, 226
BcgI CGANNNNNNTGC 1 cut(s) 28
BciT130I CCWGG 2 cut(s) 74, 250
BcoDI GTCTC 1 cut(s) 352
BfaI CTAG 1 cut(s) 393
BfoI RGCGCY 1 cut(s) 197
BfuAI ACCTGC 1 cut(s) 359
BisI GCNGC 2 cut(s) 182, 263
BlsI GCNGC 2 cut(s) 183, 264
Bme1390I CCNGG 2 cut(s) 74, 250
BmrFI CCNGG 2 cut(s) 74, 250
BmsI GCATC 2 cut(s) 14, 425
BpuEI CTTGAG 1 cut(s) 125
BsaI GGTCTC 1 cut(s) 352
BsaJI CCNNGG 1 cut(s) 249
Bsc4I CCNNNNNNNGG 2 cut(s) 343, 506
Bse118I RCCGGY 1 cut(s) 506
BseBI CCWGG 2 cut(s) 74, 250
BseDI CCNNGG 1 cut(s) 249
BseGI GGATG 2 cut(s) 132, 544
BseLI CCNNNNNNNGG 2 cut(s) 343, 506
BseRI GAGGAG 1 cut(s) 19
BseXI GCAGC 2 cut(s) 168, 274
BseYI CCCAGC 1 cut(s) 214
BsgI GTGCAG 1 cut(s) 281
BshFI GGCC 1 cut(s) 164
BsiSI CCGG 1 cut(s) 507
BslI CCNNNNNNNGG 2 cut(s) 343, 506
BsmAI GTCTC 1 cut(s) 352
BsnI GGCC 1 cut(s) 164
Bso31I GGTCTC 1 cut(s) 352
Bsp1407I TGTACA 1 cut(s) 205
Bsp143I GATC 1 cut(s) 321
BspACI CCGC 2 cut(s) 51, 188
BspANI GGCC 1 cut(s) 164
BspMI ACCTGC 1 cut(s) 359
BspPI GGATC 1 cut(s) 329
BspTNI GGTCTC 1 cut(s) 352
BsrFI RCCGGY 1 cut(s) 506
BsrGI TGTACA 1 cut(s) 205
BssAI RCCGGY 1 cut(s) 506
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 1 cut(s) 321
Bst2UI CCWGG 2 cut(s) 74, 250
Bst4CI ACNGT 1 cut(s) 172
BstAUI TGTACA 1 cut(s) 205
BstC8I GCNNGC 2 cut(s) 186, 358
BstDEI CTNAG 1 cut(s) 303
BstF5I GGATG 2 cut(s) 132, 544
BstH2I RGCGCY 1 cut(s) 197
BstHHI GCGC 1 cut(s) 196
BstKTI GATC 1 cut(s) 324
BstMAI GTCTC 1 cut(s) 352
BstMBI GATC 1 cut(s) 321
BstNI CCWGG 2 cut(s) 74, 250
BstNSI RCATGY 2 cut(s) 206, 389
BstSCI CCNGG 2 cut(s) 72, 248
BstV1I GCAGC 2 cut(s) 168, 274
BstXI CCANNNNNNTGG 1 cut(s) 175
BsuRI GGCC 1 cut(s) 164
BtsCI GGATG 2 cut(s) 132, 544
BtsIMutI CAGTG 1 cut(s) 177
BveI ACCTGC 1 cut(s) 359
Cac8I GCNNGC 2 cut(s) 186, 358
CaiI CAGNNNCTG 1 cut(s) 214
CfoI GCGC 1 cut(s) 196
Cfr10I RCCGGY 1 cut(s) 506
CsiI ACCWGGT 1 cut(s) 72
Csp6I GTAC 1 cut(s) 206
CviAII CATG 5 cut(s) 123, 148, 203, 343, 386
CviJI RGCY 7 cut(s) 157, 164, 214, 265, 360, 380, 586
CviKI_1 RGCY 7 cut(s) 157, 164, 214, 265, 360, 380, 586
CviQI GTAC 1 cut(s) 206
DdeI CTNAG 1 cut(s) 303
DpnI GATC 1 cut(s) 323
DpnII GATC 1 cut(s) 321
Eco31I GGTCTC 1 cut(s) 352
EcoRII CCWGG 2 cut(s) 72, 248
FaeI CATG 5 cut(s) 126, 151, 206, 346, 389
FaiI YATR 9 cut(s) 66, 124, 149, 204, 344, 387, 405, 492, 575
FatI CATG 5 cut(s) 122, 147, 202, 342, 385
Fnu4HI GCNGC 2 cut(s) 182, 263
FokI GGATG 2 cut(s) 139, 551
Fsp4HI GCNGC 2 cut(s) 182, 263
FspBI CTAG 1 cut(s) 393
GlaI GCGC 1 cut(s) 195
GluI GCNGC 2 cut(s) 182, 263
GsaI CCCAGC 1 cut(s) 218
HaeII RGCGCY 1 cut(s) 197
HaeIII GGCC 1 cut(s) 164
HapII CCGG 1 cut(s) 507
HhaI GCGC 1 cut(s) 196
Hin1II CATG 5 cut(s) 126, 151, 206, 346, 389
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HpaII CCGG 1 cut(s) 507
HphI GGTGA 1 cut(s) 163
Hpy166II GTNNAC 2 cut(s) 133, 238
Hpy188I TCNGA 1 cut(s) 538
Hpy8I GTNNAC 2 cut(s) 133, 238
HpyAV CCTTC 2 cut(s) 461, 487
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4V TGCA 3 cut(s) 262, 289, 410
HpyF3I CTNAG 1 cut(s) 303
Hsp92II CATG 5 cut(s) 126, 151, 206, 346, 389
HspAI GCGC 1 cut(s) 194
Kzo9I GATC 1 cut(s) 321
Lsp1109I GCAGC 2 cut(s) 168, 274
LweI GCATC 2 cut(s) 14, 425
MabI ACCWGGT 1 cut(s) 72
MaeI CTAG 1 cut(s) 393
MaeIII GTNAC 2 cut(s) 430, 546
MalI GATC 1 cut(s) 323
MboI GATC 1 cut(s) 321
MboII GAAGA 2 cut(s) 71, 74
MluCI AATT 2 cut(s) 438, 542
MnlI CCTC 6 cut(s) 40, 168, 175, 389, 473, 559
MslI CAYNNNNRTG 1 cut(s) 173
MspI CCGG 1 cut(s) 507
MspR9I CCNGG 2 cut(s) 74, 250
MvaI CCWGG 2 cut(s) 74, 250
NdeII GATC 1 cut(s) 321
NlaIII CATG 5 cut(s) 126, 151, 206, 346, 389
NspI RCATGY 2 cut(s) 206, 389
OliI CACNNNNGTG 1 cut(s) 173
PciI ACATGT 1 cut(s) 385
PkrI GCNGC 2 cut(s) 183, 264
PscI ACATGT 1 cut(s) 385
Psp6I CCWGG 2 cut(s) 72, 248
PspFI CCCAGC 1 cut(s) 214
PspGI CCWGG 2 cut(s) 72, 248
PstNI CAGNNNCTG 1 cut(s) 214
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
RseI CAYNNNNRTG 1 cut(s) 173
SatI GCNGC 2 cut(s) 182, 263
Sau3AI GATC 1 cut(s) 321
ScrFI CCNGG 2 cut(s) 74, 250
SetI ASST 7 cut(s) 78, 216, 267, 339, 373, 516, 570
SexAI ACCWGGT 1 cut(s) 72
SfaNI GCATC 2 cut(s) 14, 425
SmiMI CAYNNNNRTG 1 cut(s) 173
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 2 cut(s) 438, 542
SsiI CCGC 2 cut(s) 51, 188
SspI AATATT 2 cut(s) 423, 533
SspMI CTAG 1 cut(s) 393
StyD4I CCNGG 2 cut(s) 72, 248
TaaI ACNGT 1 cut(s) 172
TaqI TCGA 1 cut(s) 269
TasI AATT 2 cut(s) 438, 542
TatI WGTACW 1 cut(s) 205
TscAI CASTG 1 cut(s) 177
TseI GCWGC 2 cut(s) 181, 262
TspDTI ATGAA 3 cut(s) 283, 331, 555
TspRI CASTG 1 cut(s) 177
XceI RCATGY 2 cut(s) 206, 389
XspI CTAG 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.