FvH4_6g14820

Protein ALUMINUM SENSITIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013110
Physical Location & Seq
Reverse (-)
9194571 .. 9196219
1649 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g14820.t3

Sequence Viewer

Length: 921 bp
ATGGCATCATCTTCCTCGTCACTCTTCTCCTCCACCACGCAAAACCACACAGCATCATCACTACCCCTACAAGGCCTCTATGCTGATCAGGTTCTTCTTCTTCCGTTTTTTTATGTTCTTGGGAAAATGGACTTCTCATGGATGGTGGACTTTCTGAAGGGGATGGTGAAGCCTTTGGCTGCCACTGTGGTGGTGCTGCTGGCGGTGGTGCTTTCTTATGTACAGAAGCTTGGTTTGGGTGGCGAGATGGTTTACTCTATTGCCAGGGCGTTTGTGCAGCTTTCGATTATTGGGTTCGTTTTGCAGTTCATTTTCACTAGGGATAATGCTATTTGGATCGTCCTTGCTTACATGTTCATGGTCTCGGTTGCTGGCTACACAGCTGGTCAGAGGGCTAAACATGTTCCTAGAGGGAAGTATGTAGCAGGGGCATCAATATTGGTTGGAACTTCAATCACAATGTTCCTTCTTATTGTGCTCAATATCTTCCCCTTCACTCCAAGATATATTATCCCTGTTGCCGGAATGATGGTCGGAAATGCAATGACGGTAACCGGGGTTACAATGAAAAGACTGCGTGATGATATCCGAACACAAATGAACTTGGTGGAGACAGCATTAGCTCTAGGAGCAACACCACGCCAAGCAACACTTCAGCAGGTGAAGCGAGCTTTGGTCATATCGTTGTCTCCGGTTTTGGACAACGCCAAAACCGTCGGTCTGATCTCACTTCCAGGAGCAATGACCGGCCTCATCATGGGAGGAGCTTCTCCTCTGGAGGCCATTCAGCTTCAGATTGTTGTTATGAACTTTCTAATCGGTGCATCTACAATTAGCAGCATATTGTCAACATATCTGTGTTGGCCTGCCTTCTTTACCAAAGCTTATCAGTTAGAGACCAAGGTCTTCTCCACAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0014

Protein Analysis

307

Amino Acids

33.15

Weight (kDa)

9.71

Isoelectric Point (pI)

29.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0014 PF03649 59 - 202 3.5e-34 Uncharacterised protein family (UPF0014)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37330
fragaria_vesca FvH4_6g14820 FvH4_6g14820
malus_domestica MD04G1110300.v1.1 MD12G1131100.v1.1
prunus_persica Prupe.6G245600_v2.0.a1
pyrus_communis pycom04g10580 pycom12g12690
rosa_chinensis RchiOBHm_Chr3g0468051
rosa_laevigata RLG00000024456
rosa_multiflora Rmu_sc0012651.1_g000001
rosa_roxburghii Rroxscaffold_6G00413150
rosa_rugosa Rorug03G0091900
rosa_samantha Rh3AG140400 Rh3BG161700 Rh3CG161700 Rh3DG162200
rosa_wichuraiana Rw3G013260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 649
Acc36I ACCTGC 1 cut(s) 649
AciI CCGC 1 cut(s) 203
AclWI GGATC 1 cut(s) 344
AcuI CTGAAG 3 cut(s) 176, 638, 776
AfaI GTAC 1 cut(s) 222
AfiI CCNNNNNNNGG 3 cut(s) 71, 521, 757
AflIII ACRYGT 2 cut(s) 351, 400
AgsI TTSAA 1 cut(s) 453
AjnI CCWGG 2 cut(s) 263, 733
AjuI GAANNNNNNNTTGG 6 cut(s) 218, 250, 636, 656, 668, 688
AleI CACNNNNGTG 1 cut(s) 188
AluBI AGCT 8 cut(s) 229, 280, 383, 623, 671, 767, 790, 884
AluI AGCT 8 cut(s) 229, 280, 383, 623, 671, 767, 790, 884
Alw21I GWGCWC 1 cut(s) 480
Alw26I GTCTC 4 cut(s) 367, 605, 693, 890
AlwI GGATC 1 cut(s) 344
AoxI GGCC 4 cut(s) 73, 748, 780, 863
ApeKI GCWGC 4 cut(s) 179, 196, 277, 837
AsuC2I CCSGG 1 cut(s) 556
AsuHPI GGTGA 2 cut(s) 178, 673
BbsI GAAGAC 1 cut(s) 898
Bbv12I GWGCWC 1 cut(s) 480
BbvI GCAGC 4 cut(s) 166, 183, 289, 849
BccI CCATC 4 cut(s) 136, 157, 241, 523
BciT130I CCWGG 2 cut(s) 265, 735
BclI TGATCA 1 cut(s) 85
BcnI CCSGG 1 cut(s) 556
BcoDI GTCTC 4 cut(s) 367, 605, 693, 890
BfaI CTAG 3 cut(s) 318, 408, 626
BfuAI ACCTGC 1 cut(s) 649
BisI GCNGC 4 cut(s) 180, 197, 278, 838
BlsI GCNGC 4 cut(s) 181, 198, 279, 839
Bme1390I CCNGG 3 cut(s) 265, 556, 735
BmrFI CCNGG 3 cut(s) 265, 556, 735
BmsI GCATC 4 cut(s) 14, 62, 440, 833
BoxI GACNNNNGTC 1 cut(s) 902
BpiI GAAGAC 1 cut(s) 898
BpmI CTGGAG 1 cut(s) 797
BpuMI CCSGG 1 cut(s) 556
BsaI GGTCTC 2 cut(s) 367, 890
BsaJI CCNNGG 3 cut(s) 264, 555, 900
BsaWI WCCGGW 1 cut(s) 691
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 521, 757
Bse118I RCCGGY 1 cut(s) 746
Bse3DI GCAATG 2 cut(s) 549, 747
BseBI CCWGG 2 cut(s) 265, 735
BseDI CCNNGG 3 cut(s) 264, 555, 900
BseGI GGATG 2 cut(s) 147, 168
BseLI CCNNNNNNNGG 3 cut(s) 71, 521, 757
BseMI GCAATG 2 cut(s) 549, 747
BseRI GAGGAG 3 cut(s) 19, 762, 777
BseXI GCAGC 4 cut(s) 166, 183, 289, 849
BsgI GTGCAG 1 cut(s) 296
BshFI GGCC 4 cut(s) 75, 750, 782, 865
BsiHKAI GWGCWC 1 cut(s) 480
BsiSI CCGG 4 cut(s) 522, 555, 692, 747
BslI CCNNNNNNNGG 3 cut(s) 71, 521, 757
BsmAI GTCTC 4 cut(s) 367, 605, 693, 890
BsnI GGCC 4 cut(s) 75, 750, 782, 865
Bso31I GGTCTC 2 cut(s) 367, 890
Bsp1286I GDGCHC 1 cut(s) 480
Bsp1407I TGTACA 1 cut(s) 220
Bsp143I GATC 3 cut(s) 85, 336, 723
BspACI CCGC 1 cut(s) 203
BspANI GGCC 4 cut(s) 75, 750, 782, 865
BspMI ACCTGC 1 cut(s) 649
BspPI GGATC 1 cut(s) 344
BspTNI GGTCTC 2 cut(s) 367, 890
BsrDI GCAATG 2 cut(s) 549, 747
BsrFI RCCGGY 1 cut(s) 746
BsrGI TGTACA 1 cut(s) 220
BssAI RCCGGY 1 cut(s) 746
BssECI CCNNGG 3 cut(s) 264, 555, 900
BssMI GATC 3 cut(s) 85, 336, 723
BssT1I CCWWGG 1 cut(s) 900
Bst2UI CCWGG 2 cut(s) 265, 735
Bst4CI ACNGT 3 cut(s) 187, 550, 715
Bst6I CTCTTC 1 cut(s) 29
BstAUI TGTACA 1 cut(s) 220
BstC8I GCNNGC 4 cut(s) 201, 373, 669, 867
BstEII GGTNACC 1 cut(s) 550
BstF5I GGATG 2 cut(s) 147, 168
BstKTI GATC 3 cut(s) 88, 339, 726
BstMAI GTCTC 4 cut(s) 367, 605, 693, 890
BstMBI GATC 3 cut(s) 85, 336, 723
BstMWI GCNNNNNNNGC 2 cut(s) 629, 664
BstNI CCWGG 2 cut(s) 265, 735
BstNSI RCATGY 2 cut(s) 355, 404
BstPAI GACNNNNGTC 1 cut(s) 902
BstPI GGTNACC 1 cut(s) 550
BstSCI CCNGG 3 cut(s) 263, 554, 733
BstV1I GCAGC 4 cut(s) 166, 183, 289, 849
BstV2I GAAGAC 1 cut(s) 898
BstXI CCANNNNNNTGG 1 cut(s) 190
BsuRI GGCC 4 cut(s) 75, 750, 782, 865
BtsCI GGATG 2 cut(s) 147, 168
BtsIMutI CAGTG 1 cut(s) 183
BveI ACCTGC 1 cut(s) 649
Cac8I GCNNGC 4 cut(s) 201, 373, 669, 867
Cfr10I RCCGGY 1 cut(s) 746
Csp6I GTAC 1 cut(s) 221
CviAII CATG 5 cut(s) 138, 352, 358, 401, 757
CviQI GTAC 1 cut(s) 221
DpnI GATC 3 cut(s) 87, 338, 725
DpnII GATC 3 cut(s) 85, 336, 723
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
Eco130I CCWWGG 1 cut(s) 900
Eco147I AGGCCT 1 cut(s) 75
Eco31I GGTCTC 2 cut(s) 367, 890
Eco32I GATATC 1 cut(s) 586
Eco57I CTGAAG 3 cut(s) 176, 638, 776
Eco91I GGTNACC 1 cut(s) 550
EcoO65I GGTNACC 1 cut(s) 550
EcoRII CCWGG 2 cut(s) 263, 733
EcoRV GATATC 1 cut(s) 586
EcoT14I CCWWGG 1 cut(s) 900
ErhI CCWWGG 1 cut(s) 900
FaeI CATG 5 cut(s) 141, 355, 361, 404, 760
FalI AAGNNNNNCTT 2 cut(s) 636, 668
FatI CATG 5 cut(s) 137, 351, 357, 400, 756
FbaI TGATCA 1 cut(s) 85
Fnu4HI GCNGC 4 cut(s) 180, 197, 278, 838
FokI GGATG 2 cut(s) 154, 175
Fsp4HI GCNGC 4 cut(s) 180, 197, 278, 838
FspBI CTAG 3 cut(s) 318, 408, 626
GluI GCNGC 4 cut(s) 180, 197, 278, 838
GsuI CTGGAG 1 cut(s) 797
HaeIII GGCC 4 cut(s) 75, 750, 782, 865
HapII CCGG 4 cut(s) 522, 555, 692, 747
Hin1II CATG 5 cut(s) 141, 355, 361, 404, 760
HincII GTYRAC 1 cut(s) 849
HindII GTYRAC 1 cut(s) 849
HindIII AAGCTT 2 cut(s) 227, 882
HpaII CCGG 4 cut(s) 522, 555, 692, 747
HphI GGTGA 2 cut(s) 178, 673
Hpy166II GTNNAC 3 cut(s) 148, 253, 849
Hpy188I TCNGA 6 cut(s) 156, 390, 536, 590, 723, 795
Hpy188III TCNNGA 1 cut(s) 776
Hpy8I GTNNAC 3 cut(s) 148, 253, 849
Hpy99I CGWCG 1 cut(s) 719
HpyAV CCTTC 4 cut(s) 151, 476, 502, 880
HpyCH4III ACNGT 3 cut(s) 187, 550, 715
HpyCH4V TGCA 4 cut(s) 277, 304, 542, 824
HpyF10VI GCNNNNNNNGC 2 cut(s) 629, 664
Hsp92II CATG 5 cut(s) 141, 355, 361, 404, 760
Ksp22I TGATCA 1 cut(s) 85
Kzo9I GATC 3 cut(s) 85, 336, 723
LmnI GCTCC 3 cut(s) 629, 737, 764
Lsp1109I GCAGC 4 cut(s) 166, 183, 289, 849
LweI GCATC 4 cut(s) 14, 62, 440, 833
MaeI CTAG 3 cut(s) 318, 408, 626
MaeIII GTNAC 3 cut(s) 18, 550, 559
MalI GATC 3 cut(s) 87, 338, 725
MboI GATC 3 cut(s) 85, 336, 723
MboII GAAGA 7 cut(s) 3, 16, 86, 89, 92, 478, 898
MhlI GDGCHC 1 cut(s) 480
MluCI AATT 1 cut(s) 831
MmeI TCCRAC 2 cut(s) 424, 514
MnlI CCTC 9 cut(s) 25, 40, 86, 384, 404, 755, 761, 772, 783
MslI CAYNNNNRTG 3 cut(s) 188, 356, 856
MspA1I CMGCKG 1 cut(s) 383
MspI CCGG 4 cut(s) 522, 555, 692, 747
MspR9I CCNGG 3 cut(s) 265, 556, 735
MvaI CCWGG 2 cut(s) 265, 735
MwoI GCNNNNNNNGC 2 cut(s) 629, 664
NciI CCSGG 1 cut(s) 556
NdeII GATC 3 cut(s) 85, 336, 723
NlaIII CATG 5 cut(s) 141, 355, 361, 404, 760
NmuCI GTSAC 1 cut(s) 18
NspI RCATGY 2 cut(s) 355, 404
OliI CACNNNNGTG 1 cut(s) 188
PaqCI CACCTGC 1 cut(s) 649
PceI AGGCCT 1 cut(s) 75
PciI ACATGT 2 cut(s) 351, 400
PcsI WCGNNNNNNNCGW 1 cut(s) 711
PfoI TCCNGGA 1 cut(s) 733
PkrI GCNGC 4 cut(s) 181, 198, 279, 839
PscI ACATGT 2 cut(s) 351, 400
PshAI GACNNNNGTC 1 cut(s) 902
Psp6I CCWGG 2 cut(s) 263, 733
PspEI GGTNACC 1 cut(s) 550
PspGI CCWGG 2 cut(s) 263, 733
PvuII CAGCTG 1 cut(s) 383
RsaI GTAC 1 cut(s) 222
RsaNI GTAC 1 cut(s) 221
RseI CAYNNNNRTG 3 cut(s) 188, 356, 856
SatI GCNGC 4 cut(s) 180, 197, 278, 838
Sau3AI GATC 3 cut(s) 85, 336, 723
ScrFI CCNGG 3 cut(s) 265, 556, 735
SduI GDGCHC 1 cut(s) 480
SfaNI GCATC 4 cut(s) 14, 62, 440, 833
SmiMI CAYNNNNRTG 3 cut(s) 188, 356, 856
Sse9I AATT 1 cut(s) 831
SseBI AGGCCT 1 cut(s) 75
SsiI CCGC 1 cut(s) 203
SspI AATATT 1 cut(s) 438
SspMI CTAG 3 cut(s) 318, 408, 626
StuI AGGCCT 1 cut(s) 75
StyD4I CCNGG 3 cut(s) 263, 554, 733
StyI CCWWGG 1 cut(s) 900
TaaI ACNGT 3 cut(s) 187, 550, 715
TaqI TCGA 1 cut(s) 284
TaqII GACCGA 1 cut(s) 707
TasI AATT 1 cut(s) 831
TatI WGTACW 1 cut(s) 220
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 1 cut(s) 18
TseI GCWGC 4 cut(s) 179, 196, 277, 837
Tsp45I GTSAC 1 cut(s) 18
TspDTI ATGAA 5 cut(s) 298, 346, 581, 614, 821
TspGWI ACGGA 1 cut(s) 93
TspRI CASTG 1 cut(s) 190
XceI RCATGY 2 cut(s) 355, 404
XspI CTAG 3 cut(s) 318, 408, 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.