Prupe.6G245600_v2.0.a1

Protein ALUMINUM SENSITIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013110
Physical Location & Seq
Forward (+)
24275569 .. 24277871
2303 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G245600.1

Sequence Viewer

Length: 909 bp
ATGGCGTCACTTCTCTCCACCACCACGCAAACCCCTGCAAACCACACAAATATTGCACAAGGCCTGTATGCTGACCAGGTTCTTCTTCTTTCCTTCTCCGAGCTCCTGGCCAACATGGACTTAACGTGGATGGCGGATTTTCTCAAGGGCATGGTGAAGCCGCTAGCCGCGACGGTGGTGGTGCTGTTGGCGGTGGCCTTGTCCTTCATGCAGAAGCTGGGTTTGGGTGGAGAGATGATTTACTCCATTGCTAGGGCCTTTGTCCAGCTCTCCATTATTGGGTTCGTTCTGCAGTTCATTTTCACTCGGGACAATGCTGCTTGGATCATTCTGGCTTACCTTTTCATGGTAACTGTGGCTGGTTACACAGCAGGCCAAAGGGCTAAGCATGTCCCTAGAGGGAAGTATGTTGCTGGGGCTTCCATATTGGCTGGAACCTCAGTCACAATGCTCCTGCTTGTTTTGCTCAGAGTCTTCCCATTCACTCCAAGATACATCATCCCTGTTGCAGGAATGATGGTAGGAAATTCAATGACAGTAACCGGGGTTACAATGAAAAGACTTCGCGACGATATTCGAACTCAAATGAATCTGGTAGAGACAGCATTGGCTCTCGGGGCCACCCCGCGCCAAGCAACACTTCAGCAGGTGAAGAGAGCTTTGGTGATTTCCCTGTCTCCGGTTCTGGACAATGCGAAAACCGTGGGTCTCATCTCGCTTCCCGGTGCCATGACGGGGCTTATAATGGGAGGAGCTTCTCCTCTGGAGGCCATTCAGCTACAGATAGTTGTGATGAACTTTCTCATTGGTGCATCTACAGTTAGCAGCATCTTGTCAACATATCTGTGTTGGCCTGCCTTCTTTACTAAAGCTTATCAGTTAGAGACCAAGGTCTTCTCCTCAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0014

Protein Analysis

303

Amino Acids

32.55

Weight (kDa)

9.71

Isoelectric Point (pI)

22.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37330
fragaria_vesca FvH4_6g14820 FvH4_6g14820
malus_domestica MD04G1110300.v1.1 MD12G1131100.v1.1
prunus_persica Prupe.6G245600_v2.0.a1
pyrus_communis pycom04g10580 pycom12g12690
rosa_chinensis RchiOBHm_Chr3g0468051
rosa_laevigata RLG00000024456
rosa_multiflora Rmu_sc0012651.1_g000001
rosa_roxburghii Rroxscaffold_6G00413150
rosa_rugosa Rorug03G0091900
rosa_samantha Rh3AG140400 Rh3BG161700 Rh3CG161700 Rh3DG162200
rosa_wichuraiana Rw3G013260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 743
AarI CACCTGC 1 cut(s) 637
Acc36I ACCTGC 1 cut(s) 637
AccB1I GGYRCC 1 cut(s) 725
AccII CGCG 3 cut(s) 170, 567, 628
AciI CCGC 5 cut(s) 134, 161, 168, 191, 626
AclWI GGATC 1 cut(s) 332
AcoI YGGCCR 1 cut(s) 108
AcsI RAATTY 1 cut(s) 526
AcuI CTGAAG 1 cut(s) 626
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 6 cut(s) 252, 279, 346, 509, 679, 735
AgsI TTSAA 1 cut(s) 531
AjnI CCWGG 2 cut(s) 75, 105
AjuI GAANNNNNNNTTGG 6 cut(s) 206, 238, 624, 644, 656, 676
AluBI AGCT 7 cut(s) 103, 217, 268, 659, 755, 778, 872
AluI AGCT 7 cut(s) 103, 217, 268, 659, 755, 778, 872
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 4 cut(s) 593, 681, 713, 878
AlwI GGATC 1 cut(s) 332
AlwNI CAGNNNCTG 1 cut(s) 217
Ama87I CYCGRG 2 cut(s) 306, 614
AoxI GGCC 8 cut(s) 61, 108, 195, 255, 373, 618, 768, 851
ApeKI GCWGC 2 cut(s) 317, 825
ApoI RAATTY 1 cut(s) 526
AspLEI GCGC 1 cut(s) 630
AspS9I GGNCC 2 cut(s) 255, 618
AsuC2I CCSGG 2 cut(s) 544, 723
AsuHPI GGTGA 3 cut(s) 166, 661, 676
AsuII TTCGAA 1 cut(s) 577
AsuNHI GCTAGC 1 cut(s) 163
AvaI CYCGRG 2 cut(s) 306, 614
BalI TGGCCA 1 cut(s) 110
BanI GGYRCC 1 cut(s) 725
BanII GRGCYC 1 cut(s) 105
BbsI GAAGAC 2 cut(s) 466, 886
Bbv12I GWGCWC 1 cut(s) 105
BbvI GCAGC 2 cut(s) 304, 837
BccI CCATC 2 cut(s) 124, 511
BciT130I CCWGG 2 cut(s) 77, 107
BcnI CCSGG 2 cut(s) 544, 723
BcoDI GTCTC 4 cut(s) 593, 681, 713, 878
BfaI CTAG 3 cut(s) 164, 252, 396
BfmI CTRYAG 3 cut(s) 290, 779, 816
BfuAI ACCTGC 1 cut(s) 637
BisI GCNGC 4 cut(s) 161, 168, 318, 826
BlpI GCTNAGC 1 cut(s) 384
BlsI GCNGC 4 cut(s) 162, 169, 319, 827
Bme1390I CCNGG 4 cut(s) 77, 107, 544, 723
BmeT110I CYCGRG 2 cut(s) 306, 614
BmgT120I GGNCC 2 cut(s) 255, 618
BmiI GGNNCC 3 cut(s) 436, 619, 727
BmrFI CCNGG 4 cut(s) 77, 107, 544, 723
BmsI GCATC 2 cut(s) 821, 837
BmtI GCTAGC 1 cut(s) 167
BoxI GACNNNNGTC 1 cut(s) 890
BpiI GAAGAC 2 cut(s) 466, 886
BpmI CTGGAG 1 cut(s) 785
Bpu1102I GCTNAGC 1 cut(s) 384
Bpu14I TTCGAA 1 cut(s) 577
BpuEI CTTGAG 1 cut(s) 128
BpuMI CCSGG 2 cut(s) 544, 723
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 2 cut(s) 713, 878
BsaJI CCNNGG 3 cut(s) 543, 702, 888
BsaWI WCCGGW 1 cut(s) 679
Bsc4I CCNNNNNNNGG 6 cut(s) 252, 279, 346, 509, 679, 735
Bse3DI GCAATG 1 cut(s) 246
BseBI CCWGG 2 cut(s) 77, 107
BseDI CCNNGG 3 cut(s) 543, 702, 888
BseGI GGATG 2 cut(s) 135, 498
BseLI CCNNNNNNNGG 6 cut(s) 252, 279, 346, 509, 679, 735
BseMI GCAATG 1 cut(s) 246
BseMII CTCAG 2 cut(s) 453, 481
BseRI GAGGAG 3 cut(s) 750, 765, 889
BseXI GCAGC 2 cut(s) 304, 837
BseYI CCCAGC 2 cut(s) 217, 413
Bsh1236I CGCG 3 cut(s) 170, 567, 628
BshFI GGCC 8 cut(s) 63, 110, 197, 257, 375, 620, 770, 853
BshNI GGYRCC 1 cut(s) 725
BsiHKAI GWGCWC 1 cut(s) 105
BsiHKCI CYCGRG 2 cut(s) 306, 614
BsiSI CCGG 3 cut(s) 543, 680, 723
BslFI GGGAC 2 cut(s) 323, 377
BslI CCNNNNNNNGG 6 cut(s) 252, 279, 346, 509, 679, 735
BsmAI GTCTC 4 cut(s) 593, 681, 713, 878
BsmFI GGGAC 2 cut(s) 323, 377
BsnI GGCC 8 cut(s) 63, 110, 197, 257, 375, 620, 770, 853
Bso31I GGTCTC 2 cut(s) 713, 878
BsoBI CYCGRG 2 cut(s) 306, 614
Bsp119I TTCGAA 1 cut(s) 577
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 1 cut(s) 324
Bsp1720I GCTNAGC 1 cut(s) 384
Bsp68I TCGCGA 1 cut(s) 567
BspACI CCGC 5 cut(s) 134, 161, 168, 191, 626
BspANI GGCC 8 cut(s) 63, 110, 197, 257, 375, 620, 770, 853
BspCNI CTCAG 2 cut(s) 452, 480
BspFNI CGCG 3 cut(s) 170, 567, 628
BspLI GGNNCC 3 cut(s) 436, 619, 727
BspMAI CTGCAG 1 cut(s) 294
BspMI ACCTGC 1 cut(s) 637
BspOI GCTAGC 1 cut(s) 167
BspPI GGATC 1 cut(s) 332
BspT104I TTCGAA 1 cut(s) 577
BspT107I GGYRCC 1 cut(s) 725
BspTNI GGTCTC 2 cut(s) 713, 878
BsrDI GCAATG 1 cut(s) 246
BssECI CCNNGG 3 cut(s) 543, 702, 888
BssMI GATC 1 cut(s) 324
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 888
Bst2UI CCWGG 2 cut(s) 77, 107
Bst4CI ACNGT 5 cut(s) 175, 355, 538, 703, 820
Bst6I CTCTTC 1 cut(s) 647
BstACI GRCGYC 1 cut(s) 5
BstBI TTCGAA 1 cut(s) 577
BstC8I GCNNGC 3 cut(s) 165, 373, 855
BstDEI CTNAG 4 cut(s) 384, 439, 467, 901
BstDSI CCRYGG 1 cut(s) 702
BstENI CCTNNNNNAGG 1 cut(s) 507
BstF5I GGATG 2 cut(s) 135, 498
BstFNI CGCG 3 cut(s) 170, 567, 628
BstHHI GCGC 1 cut(s) 630
BstKTI GATC 1 cut(s) 327
BstMAI GTCTC 4 cut(s) 593, 681, 713, 878
BstMBI GATC 1 cut(s) 324
BstMWI GCNNNNNNNGC 2 cut(s) 463, 617
BstNI CCWGG 2 cut(s) 77, 107
BstNSI RCATGY 1 cut(s) 392
BstPAI GACNNNNGTC 1 cut(s) 890
BstSCI CCNGG 4 cut(s) 75, 105, 542, 721
BstSFI CTRYAG 3 cut(s) 290, 779, 816
BstUI CGCG 3 cut(s) 170, 567, 628
BstV1I GCAGC 2 cut(s) 304, 837
BstV2I GAAGAC 2 cut(s) 466, 886
BsuRI GGCC 8 cut(s) 63, 110, 197, 257, 375, 620, 770, 853
BtgI CCRYGG 1 cut(s) 702
BtsCI GGATG 2 cut(s) 135, 498
BtuMI TCGCGA 1 cut(s) 567
BveI ACCTGC 1 cut(s) 637
Cac8I GCNNGC 3 cut(s) 165, 373, 855
CaiI CAGNNNCTG 1 cut(s) 217
CfoI GCGC 1 cut(s) 630
Cfr13I GGNCC 2 cut(s) 255, 618
CsiI ACCWGGT 1 cut(s) 75
CviAII CATG 6 cut(s) 115, 151, 208, 346, 389, 730
DdeI CTNAG 4 cut(s) 384, 439, 467, 901
DpnI GATC 1 cut(s) 326
DpnII GATC 1 cut(s) 324
EaeI YGGCCR 1 cut(s) 108
Eam1104I CTCTTC 1 cut(s) 647
EarI CTCTTC 1 cut(s) 647
EciI GGCGGA 1 cut(s) 149
Ecl136II GAGCTC 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 888
Eco147I AGGCCT 1 cut(s) 63
Eco24I GRGCYC 1 cut(s) 105
Eco31I GGTCTC 2 cut(s) 713, 878
Eco53kI GAGCTC 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 626
Eco88I CYCGRG 2 cut(s) 306, 614
EcoICRI GAGCTC 1 cut(s) 103
EcoNI CCTNNNNNAGG 1 cut(s) 507
EcoO109I RGGNCCY 1 cut(s) 255
EcoRII CCWGG 2 cut(s) 75, 105
EcoT14I CCWWGG 1 cut(s) 888
EcoT38I GRGCYC 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 888
FaeI CATG 6 cut(s) 118, 154, 211, 349, 392, 733
FalI AAGNNNNNCTT 2 cut(s) 624, 656
FaqI GGGAC 2 cut(s) 323, 377
FatI CATG 6 cut(s) 114, 150, 207, 345, 388, 729
FauI CCCGC 1 cut(s) 633
Fnu4HI GCNGC 4 cut(s) 161, 168, 318, 826
FokI GGATG 2 cut(s) 142, 485
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 4 cut(s) 161, 168, 318, 826
FspBI CTAG 3 cut(s) 164, 252, 396
GlaI GCGC 1 cut(s) 629
GluI GCNGC 4 cut(s) 161, 168, 318, 826
GsaI CCCAGC 2 cut(s) 221, 417
GsuI CTGGAG 1 cut(s) 785
HaeIII GGCC 8 cut(s) 63, 110, 197, 257, 375, 620, 770, 853
HapII CCGG 3 cut(s) 543, 680, 723
HhaI GCGC 1 cut(s) 630
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 6 cut(s) 118, 154, 211, 349, 392, 733
Hin6I GCGC 1 cut(s) 628
HinP1I GCGC 1 cut(s) 628
HincII GTYRAC 1 cut(s) 837
HindII GTYRAC 1 cut(s) 837
HindIII AAGCTT 1 cut(s) 870
HinfI GANTC 2 cut(s) 471, 589
HpaII CCGG 3 cut(s) 543, 680, 723
HphI GGTGA 3 cut(s) 166, 661, 676
Hpy166II GTNNAC 1 cut(s) 837
Hpy188I TCNGA 3 cut(s) 100, 470, 904
Hpy188III TCNNGA 4 cut(s) 308, 566, 686, 764
Hpy8I GTNNAC 1 cut(s) 837
Hpy99I CGWCG 2 cut(s) 175, 572
HpyAV CCTTC 3 cut(s) 103, 214, 868
HpyCH4III ACNGT 5 cut(s) 175, 355, 538, 703, 820
HpyCH4IV ACGT 1 cut(s) 125
HpyCH4V TGCA 6 cut(s) 38, 56, 211, 292, 509, 812
HpyF10VI GCNNNNNNNGC 2 cut(s) 463, 617
HpyF3I CTNAG 4 cut(s) 384, 439, 467, 901
HpySE526I ACGT 1 cut(s) 125
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 6 cut(s) 118, 154, 211, 349, 392, 733
HspAI GCGC 1 cut(s) 628
Kzo9I GATC 1 cut(s) 324
LmnI GCTCC 3 cut(s) 108, 456, 752
Lsp1109I GCAGC 2 cut(s) 304, 837
LweI GCATC 2 cut(s) 821, 837
MabI ACCWGGT 1 cut(s) 75
MaeI CTAG 3 cut(s) 164, 252, 396
MaeII ACGT 1 cut(s) 125
MaeIII GTNAC 6 cut(s) 6, 349, 362, 442, 538, 547
MalI GATC 1 cut(s) 326
MboI GATC 1 cut(s) 324
MboII GAAGA 5 cut(s) 74, 77, 466, 664, 886
MhlI GDGCHC 1 cut(s) 105
MlsI TGGCCA 1 cut(s) 110
MluCI AATT 1 cut(s) 526
MluNI TGGCCA 1 cut(s) 110
MlyI GAGTC 1 cut(s) 480
MnlI CCTC 5 cut(s) 392, 448, 743, 760, 771
Mox20I TGGCCA 1 cut(s) 110
MscI TGGCCA 1 cut(s) 110
MseI TTAA 1 cut(s) 122
MslI CAYNNNNRTG 1 cut(s) 844
Msp20I TGGCCA 1 cut(s) 110
MspI CCGG 3 cut(s) 543, 680, 723
MspR9I CCNGG 4 cut(s) 77, 107, 544, 723
MvaI CCWGG 2 cut(s) 77, 107
MvnI CGCG 3 cut(s) 170, 567, 628
MwoI GCNNNNNNNGC 2 cut(s) 463, 617
NciI CCSGG 2 cut(s) 544, 723
NdeII GATC 1 cut(s) 324
NheI GCTAGC 1 cut(s) 163
NlaIII CATG 6 cut(s) 118, 154, 211, 349, 392, 733
NlaIV GGNNCC 3 cut(s) 436, 619, 727
NmuCI GTSAC 2 cut(s) 6, 442
NruI TCGCGA 1 cut(s) 567
NspI RCATGY 1 cut(s) 392
NspV TTCGAA 1 cut(s) 577
PaqCI CACCTGC 1 cut(s) 637
PceI AGGCCT 1 cut(s) 63
PfeI GAWTC 1 cut(s) 589
PkrI GCNGC 4 cut(s) 162, 169, 319, 827
PleI GAGTC 1 cut(s) 479
PpsI GAGTC 1 cut(s) 479
PshAI GACNNNNGTC 1 cut(s) 890
PsiI TTATAA 1 cut(s) 743
Psp124BI GAGCTC 1 cut(s) 105
Psp6I CCWGG 2 cut(s) 75, 105
PspFI CCCAGC 2 cut(s) 217, 413
PspGI CCWGG 2 cut(s) 75, 105
PspN4I GGNNCC 3 cut(s) 436, 619, 727
PspPI GGNCC 2 cut(s) 255, 618
PstI CTGCAG 1 cut(s) 294
PstNI CAGNNNCTG 1 cut(s) 217
RruI TCGCGA 1 cut(s) 567
RseI CAYNNNNRTG 1 cut(s) 844
SacI GAGCTC 1 cut(s) 105
SaqAI TTAA 1 cut(s) 122
SatI GCNGC 4 cut(s) 161, 168, 318, 826
Sau3AI GATC 1 cut(s) 324
Sau96I GGNCC 2 cut(s) 255, 618
SchI GAGTC 1 cut(s) 480
ScrFI CCNGG 4 cut(s) 77, 107, 544, 723
SduI GDGCHC 1 cut(s) 105
SexAI ACCWGGT 1 cut(s) 75
SfaNI GCATC 2 cut(s) 821, 837
SfcI CTRYAG 3 cut(s) 290, 779, 816
SfuI TTCGAA 1 cut(s) 577
SmiMI CAYNNNNRTG 1 cut(s) 844
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 1 cut(s) 526
SseBI AGGCCT 1 cut(s) 63
SsiI CCGC 5 cut(s) 134, 161, 168, 191, 626
SspI AATATT 1 cut(s) 52
SspMI CTAG 3 cut(s) 164, 252, 396
SstI GAGCTC 1 cut(s) 105
StuI AGGCCT 1 cut(s) 63
StyD4I CCNGG 4 cut(s) 75, 105, 542, 721
StyI CCWWGG 1 cut(s) 888
TaaI ACNGT 5 cut(s) 175, 355, 538, 703, 820
TaiI ACGT 1 cut(s) 128
TaqI TCGA 1 cut(s) 577
TasI AATT 1 cut(s) 526
TauI GCSGC 2 cut(s) 163, 170
TfiI GAWTC 1 cut(s) 589
Tru1I TTAA 1 cut(s) 122
Tru9I TTAA 1 cut(s) 122
TseFI GTSAC 2 cut(s) 6, 442
TseI GCWGC 2 cut(s) 317, 825
Tsp45I GTSAC 2 cut(s) 6, 442
TspDTI ATGAA 6 cut(s) 196, 286, 334, 569, 602, 809
XagI CCTNNNNNAGG 1 cut(s) 507
XapI RAATTY 1 cut(s) 526
XceI RCATGY 1 cut(s) 392
XspI CTAG 3 cut(s) 164, 252, 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.