Rw3G013260

Protein ALUMINUM SENSITIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0013110
Physical Location & Seq
Reverse (-)
13149270 .. 13150876
1607 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G013260.1

Sequence Viewer

Length: 900 bp
ATGGCATCATCATCGTCATCACTTTTCTCCTCCACCACGCAAAACCACATACCCCTGTATGCTGACCAGGTTCTTTTTCTTTCGTTTTTTGATGCTCTGGGGAAAATGGACTTCTCATGGATGGTGGACTTTCTCAAGGGCATGGTGAAGCCTCTGGCCGCCACCGTGGTGGTGCTGCTGGCGGTGGCGCTGTCGCACTTACAGAAGCTGGGTTTGGGTGGCGAGATGGTTTACTCTATTGCCAGGGCGTTTGTGCAGCTTTCGATTATTGGGTTTGTTTTGCAGTTCATTTTCACTAGGGATAATGCTATTTGGATCATTCTTGCTTACCTTTTCATGGTCTCTGTTGCTGGCTACACAGCAGGTCAAAGGGCTAAACATGTTCCTAGAGGGAAGTATGTTGCAGGGGCATCAATATTGGTTGGAACTTCAATTACAATGTTCCTTCTTATTGTGCTCAATGTATTCCCCTTCACTCCAAGATATATTATCCCTGTTGCCGGAATGATGGTTGGAAATGCAATGACAGTAACCGGGGTTACAATGAAAAGACTTCGAGATGATATCCGAACTCAAATGAACTTGGTGGAGACGGCATTAGCTCTAGGAGCAACACCACGCCAAGCAACACTTCAACAGGTGAAGAGAGCTTTGGTGATTTCTCTGTCTCCGGTTCTAGACAACGCAAAAACCGTCGGTCTCATCTCACTTCCTGGAGCAATGACTGGACTCATAATGGGAGGAGCTTCTCCCCTAGAGGCCATTCAGCTACAGATTGTTGTCATGAACTTTCTAATTGGTGCATCTACAATTAGCAGCATCTTGTCAACATATCTGTGTTGGCCTGCCTTCTTTACCAAAGCTTATCAGTTAGAGACCAAGGTCTTCTCCACAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0014

Protein Analysis

299

Amino Acids

32.39

Weight (kDa)

9.68

Isoelectric Point (pI)

26.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0014 PF03649 52 - 285 3.4e-67 Uncharacterised protein family (UPF0014)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37330
fragaria_vesca FvH4_6g14820 FvH4_6g14820
malus_domestica MD04G1110300.v1.1 MD12G1131100.v1.1
prunus_persica Prupe.6G245600_v2.0.a1
pyrus_communis pycom04g10580 pycom12g12690
rosa_chinensis RchiOBHm_Chr3g0468051
rosa_laevigata RLG00000024456
rosa_multiflora Rmu_sc0012651.1_g000001
rosa_roxburghii Rroxscaffold_6G00413150
rosa_rugosa Rorug03G0091900
rosa_samantha Rh3AG140400 Rh3BG161700 Rh3CG161700 Rh3DG162200
rosa_wichuraiana Rw3G013260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 353
AciI CCGC 2 cut(s) 159, 182
AclWI GGATC 1 cut(s) 323
AcoI YGGCCR 1 cut(s) 156
AfiI CCNNNNNNNGG 2 cut(s) 337, 500
AflIII ACRYGT 1 cut(s) 379
AgsI TTSAA 2 cut(s) 432, 635
AjnI CCWGG 3 cut(s) 66, 242, 712
AjuI GAANNNNNNNTTGG 6 cut(s) 197, 229, 615, 635, 647, 667
AleI CACNNNNGTG 1 cut(s) 167
AluBI AGCT 7 cut(s) 208, 259, 602, 650, 746, 769, 863
AluI AGCT 7 cut(s) 208, 259, 602, 650, 746, 769, 863
Alw21I GWGCWC 1 cut(s) 459
Alw26I GTCTC 5 cut(s) 346, 584, 672, 704, 869
AlwI GGATC 1 cut(s) 323
AlwNI CAGNNNCTG 1 cut(s) 208
AoxI GGCC 3 cut(s) 156, 759, 842
ApeKI GCWGC 3 cut(s) 175, 256, 816
AspLEI GCGC 1 cut(s) 190
AsuC2I CCSGG 1 cut(s) 535
AsuHPI GGTGA 3 cut(s) 157, 652, 667
BbsI GAAGAC 1 cut(s) 877
Bbv12I GWGCWC 1 cut(s) 459
BbvI GCAGC 3 cut(s) 162, 268, 828
BccI CCATC 3 cut(s) 115, 220, 502
BceAI ACGGC 1 cut(s) 609
BcgI CGANNNNNNTGC 1 cut(s) 28
BciT130I CCWGG 3 cut(s) 68, 244, 714
BcnI CCSGG 1 cut(s) 535
BcoDI GTCTC 5 cut(s) 346, 584, 672, 704, 869
BfaI CTAG 5 cut(s) 297, 387, 605, 677, 755
BfmI CTRYAG 1 cut(s) 770
BfoI RGCGCY 1 cut(s) 191
BfuAI ACCTGC 1 cut(s) 353
BisI GCNGC 4 cut(s) 159, 176, 257, 817
BlsI GCNGC 4 cut(s) 160, 177, 258, 818
Bme1390I CCNGG 4 cut(s) 68, 244, 535, 714
BmrFI CCNGG 4 cut(s) 68, 244, 535, 714
BmsI GCATC 5 cut(s) 14, 82, 419, 812, 828
BoxI GACNNNNGTC 1 cut(s) 881
BpiI GAAGAC 1 cut(s) 877
BpmI CTGGAG 1 cut(s) 735
BpuEI CTTGAG 1 cut(s) 119
BpuMI CCSGG 1 cut(s) 535
BsaI GGTCTC 3 cut(s) 346, 704, 869
BsaJI CCNNGG 4 cut(s) 165, 243, 534, 879
BsaWI WCCGGW 1 cut(s) 670
Bsc4I CCNNNNNNNGG 2 cut(s) 337, 500
Bse1I ACTGG 1 cut(s) 730
Bse3DI GCAATG 2 cut(s) 528, 726
BseBI CCWGG 3 cut(s) 68, 244, 714
BseDI CCNNGG 4 cut(s) 165, 243, 534, 879
BseGI GGATG 1 cut(s) 126
BseLI CCNNNNNNNGG 2 cut(s) 337, 500
BseMI GCAATG 2 cut(s) 528, 726
BseNI ACTGG 1 cut(s) 730
BseRI GAGGAG 2 cut(s) 19, 756
BseXI GCAGC 3 cut(s) 162, 268, 828
BseYI CCCAGC 1 cut(s) 208
BsgI GTGCAG 1 cut(s) 275
BshFI GGCC 3 cut(s) 158, 761, 844
BsiHKAI GWGCWC 1 cut(s) 459
BsiSI CCGG 3 cut(s) 501, 534, 671
BslI CCNNNNNNNGG 2 cut(s) 337, 500
BsmAI GTCTC 5 cut(s) 346, 584, 672, 704, 869
BsmBI CGTCTC 1 cut(s) 584
BsnI GGCC 3 cut(s) 158, 761, 844
Bso31I GGTCTC 3 cut(s) 346, 704, 869
Bsp1286I GDGCHC 1 cut(s) 459
Bsp143I GATC 1 cut(s) 315
BspACI CCGC 2 cut(s) 159, 182
BspANI GGCC 3 cut(s) 158, 761, 844
BspHI TCATGA 1 cut(s) 783
BspMI ACCTGC 1 cut(s) 353
BspPI GGATC 1 cut(s) 323
BspTNI GGTCTC 3 cut(s) 346, 704, 869
BsrDI GCAATG 2 cut(s) 528, 726
BsrI ACTGG 1 cut(s) 730
BssECI CCNNGG 4 cut(s) 165, 243, 534, 879
BssMI GATC 1 cut(s) 315
BssT1I CCWWGG 1 cut(s) 879
Bst2UI CCWGG 3 cut(s) 68, 244, 714
Bst4CI ACNGT 3 cut(s) 166, 529, 694
Bst6I CTCTTC 1 cut(s) 638
BstC8I GCNNGC 3 cut(s) 180, 352, 846
BstDSI CCRYGG 1 cut(s) 165
BstF5I GGATG 1 cut(s) 126
BstH2I RGCGCY 1 cut(s) 191
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 1 cut(s) 318
BstMAI GTCTC 5 cut(s) 346, 584, 672, 704, 869
BstMBI GATC 1 cut(s) 315
BstMWI GCNNNNNNNGC 1 cut(s) 608
BstNI CCWGG 3 cut(s) 68, 244, 714
BstNSI RCATGY 1 cut(s) 383
BstPAI GACNNNNGTC 1 cut(s) 881
BstSCI CCNGG 4 cut(s) 66, 242, 533, 712
BstSFI CTRYAG 1 cut(s) 770
BstV1I GCAGC 3 cut(s) 162, 268, 828
BstV2I GAAGAC 1 cut(s) 877
BstXI CCANNNNNNTGG 1 cut(s) 169
BsuRI GGCC 3 cut(s) 158, 761, 844
BtgI CCRYGG 1 cut(s) 165
BtsCI GGATG 1 cut(s) 126
BveI ACCTGC 1 cut(s) 353
Cac8I GCNNGC 3 cut(s) 180, 352, 846
CaiI CAGNNNCTG 1 cut(s) 208
CciI TCATGA 1 cut(s) 783
CfoI GCGC 1 cut(s) 190
CsiI ACCWGGT 1 cut(s) 66
CviAII CATG 5 cut(s) 117, 142, 337, 380, 784
DpnI GATC 1 cut(s) 317
DpnII GATC 1 cut(s) 315
EaeI YGGCCR 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 638
EarI CTCTTC 1 cut(s) 638
Eco130I CCWWGG 1 cut(s) 879
Eco31I GGTCTC 3 cut(s) 346, 704, 869
Eco32I GATATC 1 cut(s) 565
EcoRII CCWGG 3 cut(s) 66, 242, 712
EcoRV GATATC 1 cut(s) 565
EcoT14I CCWWGG 1 cut(s) 879
ErhI CCWWGG 1 cut(s) 879
Esp3I CGTCTC 1 cut(s) 584
FaeI CATG 5 cut(s) 120, 145, 340, 383, 787
FalI AAGNNNNNCTT 2 cut(s) 615, 647
FatI CATG 5 cut(s) 116, 141, 336, 379, 783
Fnu4HI GCNGC 4 cut(s) 159, 176, 257, 817
FokI GGATG 1 cut(s) 133
Fsp4HI GCNGC 4 cut(s) 159, 176, 257, 817
FspBI CTAG 5 cut(s) 297, 387, 605, 677, 755
GlaI GCGC 1 cut(s) 189
GluI GCNGC 4 cut(s) 159, 176, 257, 817
GsaI CCCAGC 1 cut(s) 212
GsuI CTGGAG 1 cut(s) 735
HaeII RGCGCY 1 cut(s) 191
HaeIII GGCC 3 cut(s) 158, 761, 844
HapII CCGG 3 cut(s) 501, 534, 671
HhaI GCGC 1 cut(s) 190
Hin1II CATG 5 cut(s) 120, 145, 340, 383, 787
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HincII GTYRAC 1 cut(s) 828
HindII GTYRAC 1 cut(s) 828
HindIII AAGCTT 1 cut(s) 861
HinfI GANTC 1 cut(s) 729
HpaII CCGG 3 cut(s) 501, 534, 671
HphI GGTGA 3 cut(s) 157, 652, 667
Hpy166II GTNNAC 3 cut(s) 127, 232, 828
Hpy188I TCNGA 1 cut(s) 569
Hpy188III TCNNGA 3 cut(s) 557, 677, 784
Hpy8I GTNNAC 3 cut(s) 127, 232, 828
Hpy99I CGWCG 1 cut(s) 698
HpyAV CCTTC 3 cut(s) 455, 481, 859
HpyCH4III ACNGT 3 cut(s) 166, 529, 694
HpyCH4V TGCA 5 cut(s) 256, 283, 404, 521, 803
HpyF10VI GCNNNNNNNGC 1 cut(s) 608
Hsp92II CATG 5 cut(s) 120, 145, 340, 383, 787
HspAI GCGC 1 cut(s) 188
Kzo9I GATC 1 cut(s) 315
LmnI GCTCC 3 cut(s) 608, 716, 743
Lsp1109I GCAGC 3 cut(s) 162, 268, 828
LweI GCATC 5 cut(s) 14, 82, 419, 812, 828
MabI ACCWGGT 1 cut(s) 66
MaeI CTAG 5 cut(s) 297, 387, 605, 677, 755
MaeIII GTNAC 2 cut(s) 529, 538
MalI GATC 1 cut(s) 317
MboI GATC 1 cut(s) 315
MboII GAAGA 2 cut(s) 655, 877
MhlI GDGCHC 1 cut(s) 459
MluCI AATT 3 cut(s) 432, 795, 810
MlyI GAGTC 1 cut(s) 723
MmeI TCCRAC 2 cut(s) 403, 493
MnlI CCTC 5 cut(s) 40, 162, 383, 734, 751
MslI CAYNNNNRTG 2 cut(s) 167, 835
MspI CCGG 3 cut(s) 501, 534, 671
MspR9I CCNGG 4 cut(s) 68, 244, 535, 714
MvaI CCWGG 3 cut(s) 68, 244, 714
MwoI GCNNNNNNNGC 1 cut(s) 608
NciI CCSGG 1 cut(s) 535
NdeII GATC 1 cut(s) 315
NlaIII CATG 5 cut(s) 120, 145, 340, 383, 787
NspI RCATGY 1 cut(s) 383
OliI CACNNNNGTG 1 cut(s) 167
PagI TCATGA 1 cut(s) 783
PciI ACATGT 1 cut(s) 379
PcsI WCGNNNNNNNCGW 1 cut(s) 690
PfoI TCCNGGA 1 cut(s) 712
PkrI GCNGC 4 cut(s) 160, 177, 258, 818
PleI GAGTC 1 cut(s) 723
PpsI GAGTC 1 cut(s) 723
PscI ACATGT 1 cut(s) 379
PshAI GACNNNNGTC 1 cut(s) 881
Psp6I CCWGG 3 cut(s) 66, 242, 712
PspFI CCCAGC 1 cut(s) 208
PspGI CCWGG 3 cut(s) 66, 242, 712
PsrI GAACNNNNNNTAC 2 cut(s) 418, 450
PstNI CAGNNNCTG 1 cut(s) 208
RseI CAYNNNNRTG 2 cut(s) 167, 835
SatI GCNGC 4 cut(s) 159, 176, 257, 817
Sau3AI GATC 1 cut(s) 315
SchI GAGTC 1 cut(s) 723
ScrFI CCNGG 4 cut(s) 68, 244, 535, 714
SduI GDGCHC 1 cut(s) 459
SexAI ACCWGGT 1 cut(s) 66
SfaNI GCATC 5 cut(s) 14, 82, 419, 812, 828
SfcI CTRYAG 1 cut(s) 770
SmiMI CAYNNNNRTG 2 cut(s) 167, 835
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 3 cut(s) 432, 795, 810
SsiI CCGC 2 cut(s) 159, 182
SspI AATATT 1 cut(s) 417
SspMI CTAG 5 cut(s) 297, 387, 605, 677, 755
StyD4I CCNGG 4 cut(s) 66, 242, 533, 712
StyI CCWWGG 1 cut(s) 879
TaaI ACNGT 3 cut(s) 166, 529, 694
TaqI TCGA 2 cut(s) 263, 556
TaqII GACCGA 1 cut(s) 686
TasI AATT 3 cut(s) 432, 795, 810
TauI GCSGC 1 cut(s) 161
TseI GCWGC 3 cut(s) 175, 256, 816
TspDTI ATGAA 5 cut(s) 277, 325, 560, 593, 800
XbaI TCTAGA 1 cut(s) 676
XceI RCATGY 1 cut(s) 383
XspI CTAG 5 cut(s) 297, 387, 605, 677, 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.