RchiOBHm_Chr3g0468051

Protein ALUMINUM SENSITIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0013110
Physical Location & Seq
Reverse (-)
14157064 .. 14158993
1930 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43397

Sequence Viewer

Length: 906 bp
ATGGCATCATCATCGTCATCACTTTTCTCCTCCACCACGCAAAACCACGCAGCATTACCCCTGTATGCTGACCAGGTTCTTTTTCTTTCGTTTTTTGATGCTCTGGGGAAAATGGACTTCTCATGGATGGTGGACTTTCTCAAGGGCATGGTGAAGCCTCTGGCCGCCACCGTGGTGGTGCTGCTGGCGGTGGCGCTGTCGCATGTACAGAAGCTGGGTTTGGGTGGCGAGATGGTTTACTCTATTGCCAGGGCGTTTGTGCAGCTTTCGATTATTGGGTTTGTTTTGCAGTTCATTTTCACTAGGGATAATGCTATTTGGATCATTCTTGCTTACCTTTTCATGGTCTCTGTTGCTGGCTACACAGCAGGTCAAAGGGCTAAACATGTTCCTAGAGGGAAGTATGTTGCAGGGGCATCAATATTGGTTGGAACTTCAATTACAATGTTCCTTCTTATTGTGCTCAATGTATTCCCCTTCACTCCAAGATATATTATCCCTGTTGCCGGAATGATGGTCGGAAATGCAATGACAGTAACCGGGGTTACAATGAAAAGACTTCGAGATGATATCCGAACTCAAATGAACTTGGTGGAGACGGCATTAGCTCTAGGAGCAACACCACGCCAAGCAACACTTCAACAGGTGAAGAGAGCTTTGGTGATTTCTCTGTCTCCGGTTCTAGACAACGCAAAAACCGTCGGTCTCATCTCACTTCCTGGAGCAATGACTGGACTCATAATGGGAGGAGCTTCTCCCCTAGAGGCCATTCAGCTACAGATTGTTGTCATGAACTTTCTAATTGGTGCATCTACAATTAGCAGCATCTTGTCAACATATCTGTGTTGGCCTGCCTTCTTTACCAAAGCTTATCAGTTAGAGACCAAGGTCTTCTCCACAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0014

Protein Analysis

301

Amino Acids

32.52

Weight (kDa)

9.68

Isoelectric Point (pI)

24.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0014 PF03649 54 - 287 2.2e-67 Uncharacterised protein family (UPF0014)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37330
fragaria_vesca FvH4_6g14820 FvH4_6g14820
malus_domestica MD04G1110300.v1.1 MD12G1131100.v1.1
prunus_persica Prupe.6G245600_v2.0.a1
pyrus_communis pycom04g10580 pycom12g12690
rosa_chinensis RchiOBHm_Chr3g0468051
rosa_laevigata RLG00000024456
rosa_multiflora Rmu_sc0012651.1_g000001
rosa_roxburghii Rroxscaffold_6G00413150
rosa_rugosa Rorug03G0091900
rosa_samantha Rh3AG140400 Rh3BG161700 Rh3CG161700 Rh3DG162200
rosa_wichuraiana Rw3G013260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 359
AciI CCGC 2 cut(s) 165, 188
AclWI GGATC 1 cut(s) 329
AcoI YGGCCR 1 cut(s) 162
AfaI GTAC 1 cut(s) 207
AfiI CCNNNNNNNGG 2 cut(s) 343, 506
AflIII ACRYGT 1 cut(s) 385
AgsI TTSAA 2 cut(s) 438, 641
AjnI CCWGG 3 cut(s) 72, 248, 718
AjuI GAANNNNNNNTTGG 6 cut(s) 203, 235, 621, 641, 653, 673
AleI CACNNNNGTG 1 cut(s) 173
AluBI AGCT 7 cut(s) 214, 265, 608, 656, 752, 775, 869
AluI AGCT 7 cut(s) 214, 265, 608, 656, 752, 775, 869
Alw21I GWGCWC 1 cut(s) 465
Alw26I GTCTC 5 cut(s) 352, 590, 678, 710, 875
AlwI GGATC 1 cut(s) 329
AlwNI CAGNNNCTG 1 cut(s) 214
AoxI GGCC 3 cut(s) 162, 765, 848
ApeKI GCWGC 4 cut(s) 50, 181, 262, 822
AspLEI GCGC 1 cut(s) 196
AsuC2I CCSGG 1 cut(s) 541
AsuHPI GGTGA 3 cut(s) 163, 658, 673
BbsI GAAGAC 1 cut(s) 883
Bbv12I GWGCWC 1 cut(s) 465
BbvI GCAGC 4 cut(s) 62, 168, 274, 834
BccI CCATC 3 cut(s) 121, 226, 508
BceAI ACGGC 1 cut(s) 615
BcgI CGANNNNNNTGC 1 cut(s) 28
BciT130I CCWGG 3 cut(s) 74, 250, 720
BcnI CCSGG 1 cut(s) 541
BcoDI GTCTC 5 cut(s) 352, 590, 678, 710, 875
BfaI CTAG 5 cut(s) 303, 393, 611, 683, 761
BfmI CTRYAG 1 cut(s) 776
BfoI RGCGCY 1 cut(s) 197
BfuAI ACCTGC 1 cut(s) 359
BisI GCNGC 5 cut(s) 51, 165, 182, 263, 823
BlsI GCNGC 5 cut(s) 52, 166, 183, 264, 824
Bme1390I CCNGG 4 cut(s) 74, 250, 541, 720
BmrFI CCNGG 4 cut(s) 74, 250, 541, 720
BmsI GCATC 5 cut(s) 14, 88, 425, 818, 834
BoxI GACNNNNGTC 1 cut(s) 887
BpiI GAAGAC 1 cut(s) 883
BpmI CTGGAG 1 cut(s) 741
BpuEI CTTGAG 1 cut(s) 125
BpuMI CCSGG 1 cut(s) 541
BsaI GGTCTC 3 cut(s) 352, 710, 875
BsaJI CCNNGG 4 cut(s) 171, 249, 540, 885
BsaWI WCCGGW 1 cut(s) 676
Bsc4I CCNNNNNNNGG 2 cut(s) 343, 506
Bse1I ACTGG 1 cut(s) 736
Bse3DI GCAATG 2 cut(s) 534, 732
BseBI CCWGG 3 cut(s) 74, 250, 720
BseDI CCNNGG 4 cut(s) 171, 249, 540, 885
BseGI GGATG 1 cut(s) 132
BseLI CCNNNNNNNGG 2 cut(s) 343, 506
BseMI GCAATG 2 cut(s) 534, 732
BseNI ACTGG 1 cut(s) 736
BseRI GAGGAG 2 cut(s) 19, 762
BseXI GCAGC 4 cut(s) 62, 168, 274, 834
BseYI CCCAGC 1 cut(s) 214
BsgI GTGCAG 1 cut(s) 281
BshFI GGCC 3 cut(s) 164, 767, 850
BsiHKAI GWGCWC 1 cut(s) 465
BsiSI CCGG 3 cut(s) 507, 540, 677
BslI CCNNNNNNNGG 2 cut(s) 343, 506
BsmAI GTCTC 5 cut(s) 352, 590, 678, 710, 875
BsmBI CGTCTC 1 cut(s) 590
BsnI GGCC 3 cut(s) 164, 767, 850
Bso31I GGTCTC 3 cut(s) 352, 710, 875
Bsp1286I GDGCHC 1 cut(s) 465
Bsp1407I TGTACA 1 cut(s) 205
Bsp143I GATC 1 cut(s) 321
BspACI CCGC 2 cut(s) 165, 188
BspANI GGCC 3 cut(s) 164, 767, 850
BspHI TCATGA 1 cut(s) 789
BspMI ACCTGC 1 cut(s) 359
BspPI GGATC 1 cut(s) 329
BspTNI GGTCTC 3 cut(s) 352, 710, 875
BsrDI GCAATG 2 cut(s) 534, 732
BsrGI TGTACA 1 cut(s) 205
BsrI ACTGG 1 cut(s) 736
BssECI CCNNGG 4 cut(s) 171, 249, 540, 885
BssMI GATC 1 cut(s) 321
BssT1I CCWWGG 1 cut(s) 885
Bst2UI CCWGG 3 cut(s) 74, 250, 720
Bst4CI ACNGT 3 cut(s) 172, 535, 700
Bst6I CTCTTC 1 cut(s) 644
BstAUI TGTACA 1 cut(s) 205
BstC8I GCNNGC 3 cut(s) 186, 358, 852
BstDSI CCRYGG 1 cut(s) 171
BstF5I GGATG 1 cut(s) 132
BstH2I RGCGCY 1 cut(s) 197
BstHHI GCGC 1 cut(s) 196
BstKTI GATC 1 cut(s) 324
BstMAI GTCTC 5 cut(s) 352, 590, 678, 710, 875
BstMBI GATC 1 cut(s) 321
BstMWI GCNNNNNNNGC 1 cut(s) 614
BstNI CCWGG 3 cut(s) 74, 250, 720
BstNSI RCATGY 2 cut(s) 206, 389
BstPAI GACNNNNGTC 1 cut(s) 887
BstSCI CCNGG 4 cut(s) 72, 248, 539, 718
BstSFI CTRYAG 1 cut(s) 776
BstV1I GCAGC 4 cut(s) 62, 168, 274, 834
BstV2I GAAGAC 1 cut(s) 883
BstXI CCANNNNNNTGG 1 cut(s) 175
BsuRI GGCC 3 cut(s) 164, 767, 850
BtgI CCRYGG 1 cut(s) 171
BtsCI GGATG 1 cut(s) 132
BveI ACCTGC 1 cut(s) 359
Cac8I GCNNGC 3 cut(s) 186, 358, 852
CaiI CAGNNNCTG 1 cut(s) 214
CciI TCATGA 1 cut(s) 789
CfoI GCGC 1 cut(s) 196
CsiI ACCWGGT 1 cut(s) 72
Csp6I GTAC 1 cut(s) 206
CviAII CATG 6 cut(s) 123, 148, 203, 343, 386, 790
CviQI GTAC 1 cut(s) 206
DpnI GATC 1 cut(s) 323
DpnII GATC 1 cut(s) 321
EaeI YGGCCR 1 cut(s) 162
Eam1104I CTCTTC 1 cut(s) 644
EarI CTCTTC 1 cut(s) 644
Eco130I CCWWGG 1 cut(s) 885
Eco31I GGTCTC 3 cut(s) 352, 710, 875
Eco32I GATATC 1 cut(s) 571
EcoRII CCWGG 3 cut(s) 72, 248, 718
EcoRV GATATC 1 cut(s) 571
EcoT14I CCWWGG 1 cut(s) 885
ErhI CCWWGG 1 cut(s) 885
Esp3I CGTCTC 1 cut(s) 590
FaeI CATG 6 cut(s) 126, 151, 206, 346, 389, 793
FalI AAGNNNNNCTT 2 cut(s) 621, 653
FatI CATG 6 cut(s) 122, 147, 202, 342, 385, 789
Fnu4HI GCNGC 5 cut(s) 51, 165, 182, 263, 823
FokI GGATG 1 cut(s) 139
Fsp4HI GCNGC 5 cut(s) 51, 165, 182, 263, 823
FspBI CTAG 5 cut(s) 303, 393, 611, 683, 761
GlaI GCGC 1 cut(s) 195
GluI GCNGC 5 cut(s) 51, 165, 182, 263, 823
GsaI CCCAGC 1 cut(s) 218
GsuI CTGGAG 1 cut(s) 741
HaeII RGCGCY 1 cut(s) 197
HaeIII GGCC 3 cut(s) 164, 767, 850
HapII CCGG 3 cut(s) 507, 540, 677
HhaI GCGC 1 cut(s) 196
Hin1II CATG 6 cut(s) 126, 151, 206, 346, 389, 793
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HincII GTYRAC 1 cut(s) 834
HindII GTYRAC 1 cut(s) 834
HindIII AAGCTT 1 cut(s) 867
HinfI GANTC 1 cut(s) 735
HpaII CCGG 3 cut(s) 507, 540, 677
HphI GGTGA 3 cut(s) 163, 658, 673
Hpy166II GTNNAC 3 cut(s) 133, 238, 834
Hpy188I TCNGA 2 cut(s) 521, 575
Hpy188III TCNNGA 3 cut(s) 563, 683, 790
Hpy8I GTNNAC 3 cut(s) 133, 238, 834
Hpy99I CGWCG 1 cut(s) 704
HpyAV CCTTC 3 cut(s) 461, 487, 865
HpyCH4III ACNGT 3 cut(s) 172, 535, 700
HpyCH4V TGCA 5 cut(s) 262, 289, 410, 527, 809
HpyF10VI GCNNNNNNNGC 1 cut(s) 614
Hsp92II CATG 6 cut(s) 126, 151, 206, 346, 389, 793
HspAI GCGC 1 cut(s) 194
Kzo9I GATC 1 cut(s) 321
LmnI GCTCC 3 cut(s) 614, 722, 749
Lsp1109I GCAGC 4 cut(s) 62, 168, 274, 834
LweI GCATC 5 cut(s) 14, 88, 425, 818, 834
MabI ACCWGGT 1 cut(s) 72
MaeI CTAG 5 cut(s) 303, 393, 611, 683, 761
MaeIII GTNAC 2 cut(s) 535, 544
MalI GATC 1 cut(s) 323
MboI GATC 1 cut(s) 321
MboII GAAGA 2 cut(s) 661, 883
MhlI GDGCHC 1 cut(s) 465
MluCI AATT 3 cut(s) 438, 801, 816
MlyI GAGTC 1 cut(s) 729
MmeI TCCRAC 2 cut(s) 409, 499
MnlI CCTC 5 cut(s) 40, 168, 389, 740, 757
MslI CAYNNNNRTG 2 cut(s) 173, 841
MspI CCGG 3 cut(s) 507, 540, 677
MspR9I CCNGG 4 cut(s) 74, 250, 541, 720
MvaI CCWGG 3 cut(s) 74, 250, 720
MwoI GCNNNNNNNGC 1 cut(s) 614
NciI CCSGG 1 cut(s) 541
NdeII GATC 1 cut(s) 321
NlaIII CATG 6 cut(s) 126, 151, 206, 346, 389, 793
NspI RCATGY 2 cut(s) 206, 389
OliI CACNNNNGTG 1 cut(s) 173
PagI TCATGA 1 cut(s) 789
PciI ACATGT 1 cut(s) 385
PcsI WCGNNNNNNNCGW 1 cut(s) 696
PfoI TCCNGGA 1 cut(s) 718
PkrI GCNGC 5 cut(s) 52, 166, 183, 264, 824
PleI GAGTC 1 cut(s) 729
PpsI GAGTC 1 cut(s) 729
PscI ACATGT 1 cut(s) 385
PshAI GACNNNNGTC 1 cut(s) 887
Psp6I CCWGG 3 cut(s) 72, 248, 718
PspFI CCCAGC 1 cut(s) 214
PspGI CCWGG 3 cut(s) 72, 248, 718
PsrI GAACNNNNNNTAC 2 cut(s) 424, 456
PstNI CAGNNNCTG 1 cut(s) 214
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
RseI CAYNNNNRTG 2 cut(s) 173, 841
SatI GCNGC 5 cut(s) 51, 165, 182, 263, 823
Sau3AI GATC 1 cut(s) 321
SchI GAGTC 1 cut(s) 729
ScrFI CCNGG 4 cut(s) 74, 250, 541, 720
SduI GDGCHC 1 cut(s) 465
SexAI ACCWGGT 1 cut(s) 72
SfaNI GCATC 5 cut(s) 14, 88, 425, 818, 834
SfcI CTRYAG 1 cut(s) 776
SmiMI CAYNNNNRTG 2 cut(s) 173, 841
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 3 cut(s) 438, 801, 816
SsiI CCGC 2 cut(s) 165, 188
SspI AATATT 1 cut(s) 423
SspMI CTAG 5 cut(s) 303, 393, 611, 683, 761
StyD4I CCNGG 4 cut(s) 72, 248, 539, 718
StyI CCWWGG 1 cut(s) 885
TaaI ACNGT 3 cut(s) 172, 535, 700
TaqI TCGA 2 cut(s) 269, 562
TaqII GACCGA 1 cut(s) 692
TasI AATT 3 cut(s) 438, 801, 816
TatI WGTACW 1 cut(s) 205
TauI GCSGC 1 cut(s) 167
TseI GCWGC 4 cut(s) 50, 181, 262, 822
TspDTI ATGAA 5 cut(s) 283, 331, 566, 599, 806
XbaI TCTAGA 1 cut(s) 682
XceI RCATGY 2 cut(s) 206, 389
XspI CTAG 5 cut(s) 303, 393, 611, 683, 761
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.