Rh3DG162200

Protein ALUMINUM SENSITIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0013110
Physical Location & Seq
Reverse (-)
14085279 .. 14087299
2021 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG162200.1

Sequence Viewer

Length: 795 bp
ATGGACTTCTCATGGATGGTGGACTTTCTCAAGGGCATGGTGAAGCCTCTGGCCGCCACCGTGGTGGTGCTGCTGGCGGTGGCGCTGTCGCACGTACAGAAGCTGGGTTTGGGTGGCGAGATGGTTTACTCTATTGCCAGGGCGTTTGTGCAGCTTTCGATTATTGGGTTTGTTTTGCAGTTCATTTTCACTAGGGATAATGCTATTTGGATCATTCTTGCTTACCTTTTCATGGTCTCTGTTGCTGGCTACACAGCAGGTCAAAGGGCTAAACATGTTCCTAGAGGGAAGTATGTTGCAGGGGCATCAATATTGGTTGGAACTTCAATTACAATGTTCCTTCTTATTGTGCTCAATGTATTCCCCTTCACTCCAAGATATATTATCCCTGTTGCCGGAATGATGGTTGGAAATGCAATGACAGTAACCGGGGTTACAATGAAAAGACTTCGAGATGATATCCGAACTCAAATGAACTTGGTGGAGACGGCATTAGCTCTAGGAGCAACACCACGCCAAGCAACACTTCAACAGGTGAAGAGAGCTTTGGTGATTTCTCTGTCTCCGGTTCTAGACAACGCAAAAACCGTCGGTCTCATCTCACTTCCTGGAGCAATGACTGGACTCATAATGGGAGGAGCTTCTCCCCTAGAGGCCATTCAGCTACAGATTGTTGTCATGAACTTTCTAATTGGTGCATCTACAATTAGCAGCATCTTGTCAACATATCTGTGTTGGCCTGCCTTCTTTACCAAAGCTTATCAGTTAGAGACCAAGGTCTTCTCCACAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0014

Protein Analysis

264

Amino Acids

28.59

Weight (kDa)

9.85

Isoelectric Point (pI)

20.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0014 PF03649 17 - 250 1.4e-67 Uncharacterised protein family (UPF0014)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37330
fragaria_vesca FvH4_6g14820 FvH4_6g14820
malus_domestica MD04G1110300.v1.1 MD12G1131100.v1.1
prunus_persica Prupe.6G245600_v2.0.a1
pyrus_communis pycom04g10580 pycom12g12690
rosa_chinensis RchiOBHm_Chr3g0468051
rosa_laevigata RLG00000024456
rosa_multiflora Rmu_sc0012651.1_g000001
rosa_roxburghii Rroxscaffold_6G00413150
rosa_rugosa Rorug03G0091900
rosa_samantha Rh3AG140400 Rh3BG161700 Rh3CG161700 Rh3DG162200
rosa_wichuraiana Rw3G013260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 248
AciI CCGC 2 cut(s) 54, 77
AclWI GGATC 1 cut(s) 218
AcoI YGGCCR 1 cut(s) 51
AfaI GTAC 1 cut(s) 96
AfiI CCNNNNNNNGG 2 cut(s) 232, 395
AflIII ACRYGT 1 cut(s) 274
AgsI TTSAA 2 cut(s) 327, 530
AjnI CCWGG 2 cut(s) 137, 607
AjuI GAANNNNNNNTTGG 6 cut(s) 92, 124, 510, 530, 542, 562
AleI CACNNNNGTG 1 cut(s) 62
AluBI AGCT 7 cut(s) 103, 154, 497, 545, 641, 664, 758
AluI AGCT 7 cut(s) 103, 154, 497, 545, 641, 664, 758
Alw21I GWGCWC 1 cut(s) 354
Alw26I GTCTC 5 cut(s) 241, 479, 567, 599, 764
AlwI GGATC 1 cut(s) 218
AlwNI CAGNNNCTG 1 cut(s) 103
AoxI GGCC 3 cut(s) 51, 654, 737
ApeKI GCWGC 3 cut(s) 70, 151, 711
AspLEI GCGC 1 cut(s) 85
AsuC2I CCSGG 1 cut(s) 430
AsuHPI GGTGA 3 cut(s) 52, 547, 562
BbsI GAAGAC 1 cut(s) 772
Bbv12I GWGCWC 1 cut(s) 354
BbvI GCAGC 3 cut(s) 57, 163, 723
BccI CCATC 3 cut(s) 10, 115, 397
BceAI ACGGC 1 cut(s) 504
BciT130I CCWGG 2 cut(s) 139, 609
BcnI CCSGG 1 cut(s) 430
BcoDI GTCTC 5 cut(s) 241, 479, 567, 599, 764
BfaI CTAG 5 cut(s) 192, 282, 500, 572, 650
BfmI CTRYAG 1 cut(s) 665
BfoI RGCGCY 1 cut(s) 86
BfuAI ACCTGC 1 cut(s) 248
BisI GCNGC 4 cut(s) 54, 71, 152, 712
BlsI GCNGC 4 cut(s) 55, 72, 153, 713
Bme1390I CCNGG 3 cut(s) 139, 430, 609
BmrFI CCNGG 3 cut(s) 139, 430, 609
BmsI GCATC 3 cut(s) 314, 707, 723
BoxI GACNNNNGTC 1 cut(s) 776
BpiI GAAGAC 1 cut(s) 772
BpmI CTGGAG 1 cut(s) 630
BpuEI CTTGAG 1 cut(s) 14
BpuMI CCSGG 1 cut(s) 430
BsaAI YACGTR 1 cut(s) 94
BsaI GGTCTC 3 cut(s) 241, 599, 764
BsaJI CCNNGG 4 cut(s) 60, 138, 429, 774
BsaWI WCCGGW 1 cut(s) 565
Bsc4I CCNNNNNNNGG 2 cut(s) 232, 395
Bse1I ACTGG 1 cut(s) 625
Bse3DI GCAATG 2 cut(s) 423, 621
BseBI CCWGG 2 cut(s) 139, 609
BseDI CCNNGG 4 cut(s) 60, 138, 429, 774
BseGI GGATG 1 cut(s) 21
BseLI CCNNNNNNNGG 2 cut(s) 232, 395
BseMI GCAATG 2 cut(s) 423, 621
BseNI ACTGG 1 cut(s) 625
BseRI GAGGAG 1 cut(s) 651
BseXI GCAGC 3 cut(s) 57, 163, 723
BseYI CCCAGC 1 cut(s) 103
BsgI GTGCAG 1 cut(s) 170
BshFI GGCC 3 cut(s) 53, 656, 739
BsiHKAI GWGCWC 1 cut(s) 354
BsiSI CCGG 3 cut(s) 396, 429, 566
BslI CCNNNNNNNGG 2 cut(s) 232, 395
BsmAI GTCTC 5 cut(s) 241, 479, 567, 599, 764
BsmBI CGTCTC 1 cut(s) 479
BsnI GGCC 3 cut(s) 53, 656, 739
Bso31I GGTCTC 3 cut(s) 241, 599, 764
Bsp1286I GDGCHC 1 cut(s) 354
Bsp143I GATC 1 cut(s) 210
BspACI CCGC 2 cut(s) 54, 77
BspANI GGCC 3 cut(s) 53, 656, 739
BspHI TCATGA 1 cut(s) 678
BspMI ACCTGC 1 cut(s) 248
BspPI GGATC 1 cut(s) 218
BspTNI GGTCTC 3 cut(s) 241, 599, 764
BsrDI GCAATG 2 cut(s) 423, 621
BsrI ACTGG 1 cut(s) 625
BssECI CCNNGG 4 cut(s) 60, 138, 429, 774
BssMI GATC 1 cut(s) 210
BssT1I CCWWGG 1 cut(s) 774
Bst2UI CCWGG 2 cut(s) 139, 609
Bst4CI ACNGT 3 cut(s) 61, 424, 589
Bst6I CTCTTC 1 cut(s) 533
BstBAI YACGTR 1 cut(s) 94
BstC8I GCNNGC 3 cut(s) 75, 247, 741
BstDSI CCRYGG 1 cut(s) 60
BstF5I GGATG 1 cut(s) 21
BstH2I RGCGCY 1 cut(s) 86
BstHHI GCGC 1 cut(s) 85
BstKTI GATC 1 cut(s) 213
BstMAI GTCTC 5 cut(s) 241, 479, 567, 599, 764
BstMBI GATC 1 cut(s) 210
BstMWI GCNNNNNNNGC 1 cut(s) 503
BstNI CCWGG 2 cut(s) 139, 609
BstNSI RCATGY 1 cut(s) 278
BstPAI GACNNNNGTC 1 cut(s) 776
BstSCI CCNGG 3 cut(s) 137, 428, 607
BstSFI CTRYAG 1 cut(s) 665
BstV1I GCAGC 3 cut(s) 57, 163, 723
BstV2I GAAGAC 1 cut(s) 772
BstXI CCANNNNNNTGG 1 cut(s) 64
BsuRI GGCC 3 cut(s) 53, 656, 739
BtgI CCRYGG 1 cut(s) 60
BtsCI GGATG 1 cut(s) 21
BveI ACCTGC 1 cut(s) 248
Cac8I GCNNGC 3 cut(s) 75, 247, 741
CaiI CAGNNNCTG 1 cut(s) 103
CciI TCATGA 1 cut(s) 678
CfoI GCGC 1 cut(s) 85
Csp6I GTAC 1 cut(s) 95
CviAII CATG 5 cut(s) 12, 37, 232, 275, 679
CviQI GTAC 1 cut(s) 95
DpnI GATC 1 cut(s) 212
DpnII GATC 1 cut(s) 210
EaeI YGGCCR 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 533
EarI CTCTTC 1 cut(s) 533
Eco130I CCWWGG 1 cut(s) 774
Eco31I GGTCTC 3 cut(s) 241, 599, 764
Eco32I GATATC 1 cut(s) 460
EcoRII CCWGG 2 cut(s) 137, 607
EcoRV GATATC 1 cut(s) 460
EcoT14I CCWWGG 1 cut(s) 774
ErhI CCWWGG 1 cut(s) 774
Esp3I CGTCTC 1 cut(s) 479
FaeI CATG 5 cut(s) 15, 40, 235, 278, 682
FaiI YATR 9 cut(s) 13, 38, 233, 276, 294, 381, 629, 680, 727
FalI AAGNNNNNCTT 2 cut(s) 510, 542
FatI CATG 5 cut(s) 11, 36, 231, 274, 678
Fnu4HI GCNGC 4 cut(s) 54, 71, 152, 712
FokI GGATG 1 cut(s) 28
Fsp4HI GCNGC 4 cut(s) 54, 71, 152, 712
FspBI CTAG 5 cut(s) 192, 282, 500, 572, 650
GlaI GCGC 1 cut(s) 84
GluI GCNGC 4 cut(s) 54, 71, 152, 712
GsaI CCCAGC 1 cut(s) 107
GsuI CTGGAG 1 cut(s) 630
HaeII RGCGCY 1 cut(s) 86
HaeIII GGCC 3 cut(s) 53, 656, 739
HapII CCGG 3 cut(s) 396, 429, 566
HhaI GCGC 1 cut(s) 85
Hin1II CATG 5 cut(s) 15, 40, 235, 278, 682
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HincII GTYRAC 1 cut(s) 723
HindII GTYRAC 1 cut(s) 723
HindIII AAGCTT 1 cut(s) 756
HinfI GANTC 1 cut(s) 624
HpaII CCGG 3 cut(s) 396, 429, 566
HphI GGTGA 3 cut(s) 52, 547, 562
Hpy166II GTNNAC 3 cut(s) 22, 127, 723
Hpy188I TCNGA 1 cut(s) 464
Hpy188III TCNNGA 3 cut(s) 452, 572, 679
Hpy8I GTNNAC 3 cut(s) 22, 127, 723
Hpy99I CGWCG 1 cut(s) 593
HpyAV CCTTC 3 cut(s) 350, 376, 754
HpyCH4III ACNGT 3 cut(s) 61, 424, 589
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 5 cut(s) 151, 178, 299, 416, 698
HpyF10VI GCNNNNNNNGC 1 cut(s) 503
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 5 cut(s) 15, 40, 235, 278, 682
HspAI GCGC 1 cut(s) 83
Kzo9I GATC 1 cut(s) 210
LmnI GCTCC 3 cut(s) 503, 611, 638
Lsp1109I GCAGC 3 cut(s) 57, 163, 723
LweI GCATC 3 cut(s) 314, 707, 723
MaeI CTAG 5 cut(s) 192, 282, 500, 572, 650
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 2 cut(s) 424, 433
MalI GATC 1 cut(s) 212
MboI GATC 1 cut(s) 210
MboII GAAGA 2 cut(s) 550, 772
MhlI GDGCHC 1 cut(s) 354
MluCI AATT 3 cut(s) 327, 690, 705
MlyI GAGTC 1 cut(s) 618
MmeI TCCRAC 2 cut(s) 298, 388
MnlI CCTC 4 cut(s) 57, 278, 629, 646
MslI CAYNNNNRTG 2 cut(s) 62, 730
MspI CCGG 3 cut(s) 396, 429, 566
MspR9I CCNGG 3 cut(s) 139, 430, 609
MvaI CCWGG 2 cut(s) 139, 609
MwoI GCNNNNNNNGC 1 cut(s) 503
NciI CCSGG 1 cut(s) 430
NdeII GATC 1 cut(s) 210
NlaIII CATG 5 cut(s) 15, 40, 235, 278, 682
NspI RCATGY 1 cut(s) 278
OliI CACNNNNGTG 1 cut(s) 62
PagI TCATGA 1 cut(s) 678
PciI ACATGT 1 cut(s) 274
PcsI WCGNNNNNNNCGW 1 cut(s) 585
PfoI TCCNGGA 1 cut(s) 607
PkrI GCNGC 4 cut(s) 55, 72, 153, 713
PleI GAGTC 1 cut(s) 618
PpsI GAGTC 1 cut(s) 618
Ppu21I YACGTR 1 cut(s) 94
PscI ACATGT 1 cut(s) 274
PshAI GACNNNNGTC 1 cut(s) 776
Psp6I CCWGG 2 cut(s) 137, 607
PspFI CCCAGC 1 cut(s) 103
PspGI CCWGG 2 cut(s) 137, 607
PsrI GAACNNNNNNTAC 2 cut(s) 313, 345
PstNI CAGNNNCTG 1 cut(s) 103
RsaI GTAC 1 cut(s) 96
RsaNI GTAC 1 cut(s) 95
RseI CAYNNNNRTG 2 cut(s) 62, 730
SatI GCNGC 4 cut(s) 54, 71, 152, 712
Sau3AI GATC 1 cut(s) 210
SchI GAGTC 1 cut(s) 618
ScrFI CCNGG 3 cut(s) 139, 430, 609
SduI GDGCHC 1 cut(s) 354
SfaNI GCATC 3 cut(s) 314, 707, 723
SfcI CTRYAG 1 cut(s) 665
SmiMI CAYNNNNRTG 2 cut(s) 62, 730
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 3 cut(s) 327, 690, 705
SsiI CCGC 2 cut(s) 54, 77
SspI AATATT 1 cut(s) 312
SspMI CTAG 5 cut(s) 192, 282, 500, 572, 650
StyD4I CCNGG 3 cut(s) 137, 428, 607
StyI CCWWGG 1 cut(s) 774
TaaI ACNGT 3 cut(s) 61, 424, 589
TaiI ACGT 1 cut(s) 96
TaqI TCGA 2 cut(s) 158, 451
TaqII GACCGA 1 cut(s) 581
TasI AATT 3 cut(s) 327, 690, 705
TauI GCSGC 1 cut(s) 56
TseI GCWGC 3 cut(s) 70, 151, 711
TspDTI ATGAA 5 cut(s) 172, 220, 455, 488, 695
XbaI TCTAGA 1 cut(s) 571
XceI RCATGY 1 cut(s) 278
XspI CTAG 5 cut(s) 192, 282, 500, 572, 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.