Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013110

Physical Location & Seq

Genomic Coordinates Forward (+)

15669131 .. 15670187

Gene Structure 1057 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G37330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGATCTGAAATGGGATGATTTTTTCAACGATTACGAATGGCTGATCGTGTTTCTGAAAGGTATGGTGAAGCCAGCGGCGGCGCTCGTGGTGGTGCTTTTGGCGGTGATTCTTTCATACTCGCAGAACCTATCTTTGGAAGGAGAAATGATATACTCTGTTTCCCGATCGTTTCTTCAACTCTCTGTTATCGGATTTGTTCTTCAGTTCATCTTTAACCAAGAGAACTCAGGCTGGATCATCCTTGCGTATCTCTTCATGGTCTCTGTCGCCGGTTACACTGCCGGACAACGTGCGAGGCACGTGCCACGTGGAAAGTACGTGGCCGGATTATCGATCCTTGCCGGGACTTCAATTACAATGTTCTTGCTCGTCCTCCTCAACGTCTTTCCTTTCACTCCGAGGTATATGATCCCAATCGCCGGAATGTTGGTCGGAAATGCCATGACCGTCACCGGAGTTACCATGAAACAGCTTCGAGATGACATCAAAATGCAACTCAACCTGGTGGAGACGGCATTGGCACTAGGAGCAACGCCAAGACAAGCGACGTTGCAACAGGTGAAGAGAGCACTAGTGATCTCTCTGTCTCCGGTTTTAGATAGCTGCAAAACCGTTGGATTGATCTCTCTACCAGGCGCAATGACTGGTATGATAATGGGCGGGGCGTCGCCTCTAGAAGCTATTCAGCTTCAGATAGTAGTCATGAACATGATGGTAGGAGCAGCTACGGTTAGTAGCATCACGTCTACTTATCTTTGTTGGCCATCTTTCTTCACTAAAGCTTACCAGTTACAAACTCATGTCTTCTCCTCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005460 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0010035 GO:0010038 GO:0010044 GO:0012506 GO:0015075 GO:0015165 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0031982 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0044422 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0090481 GO:0098656 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0014

Protein Analysis

273

Amino Acids

29.89

Weight (kDa)

8.85

Isoelectric Point (pI)

31.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UPF0014	PF03649	26 - 259	1.9e-66	Uncharacterised protein family (UPF0014)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37330
fragaria_vesca	FvH4_6g14820 FvH4_6g14820
malus_domestica	MD04G1110300.v1.1 MD12G1131100.v1.1
prunus_persica	Prupe.6G245600_v2.0.a1
pyrus_communis	pycom04g10580 pycom12g12690
rosa_chinensis	RchiOBHm_Chr3g0468051
rosa_laevigata	RLG00000024456
rosa_multiflora	Rmu_sc0012651.1_g000001
rosa_roxburghii	Rroxscaffold_6G00413150
rosa_rugosa	Rorug03G0091900
rosa_samantha	Rh3AG140400 Rh3BG161700 Rh3CG161700 Rh3DG162200
rosa_wichuraiana	Rw3G013260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	749
AciI	CCGC	4 cut(s)	77, 80, 104, 663
AclWI	GGATC	4 cut(s)	12, 245, 331, 406
AcoI	YGGCCR	2 cut(s)	324, 764
AcuI	CTGAAG	2 cut(s)	188, 677
AcvI	CACGTG	2 cut(s)	304, 311
AcyI	GRCGYC	1 cut(s)	668
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	2 cut(s)	136, 422
AgsI	TTSAA	3 cut(s)	28, 179, 354
AhlI	ACTAGT	1 cut(s)	574
AjiI	CACGTC	1 cut(s)	747
AjnI	CCWGG	2 cut(s)	504, 634
AjuI	GAANNNNNNNTTGG	2 cut(s)	119, 151
AluBI	AGCT	6 cut(s)	475, 606, 683, 691, 728, 785
AluI	AGCT	6 cut(s)	475, 606, 683, 691, 728, 785
Alw21I	GWGCWC	1 cut(s)	574
Alw26I	GTCTC	3 cut(s)	268, 506, 594
AlwI	GGATC	4 cut(s)	12, 245, 331, 406
AoxI	GGCC	2 cut(s)	324, 764
ApeKI	GCWGC	2 cut(s)	606, 725
Asp700I	GAANNNNTTC	1 cut(s)	684
AspLEI	GCGC	2 cut(s)	85, 641
AsuC2I	CCSGG	1 cut(s)	346
AsuHPI	GGTGA	4 cut(s)	79, 118, 445, 574
BalI	TGGCCA	1 cut(s)	766
BauI	CACGAG	1 cut(s)	86
BbrPI	CACGTG	2 cut(s)	304, 311
BbsI	GAAGAC	1 cut(s)	799
Bbv12I	GWGCWC	1 cut(s)	574
BbvI	GCAGC	2 cut(s)	593, 737
BccI	CCATC	2 cut(s)	709, 775
BceAI	ACGGC	1 cut(s)	531
BcgI	CGANNNNNNTGC	2 cut(s)	286, 320
BciT130I	CCWGG	2 cut(s)	506, 636
BcnI	CCSGG	1 cut(s)	346
BcoDI	GTCTC	3 cut(s)	268, 506, 594
BcuI	ACTAGT	1 cut(s)	574
BfaI	CTAG	3 cut(s)	527, 575, 677
BfoI	RGCGCY	1 cut(s)	86
BisI	GCNGC	4 cut(s)	78, 81, 607, 726
BlsI	GCNGC	4 cut(s)	79, 82, 608, 727
Bme1390I	CCNGG	3 cut(s)	346, 506, 636
BmgBI	CACGTC	1 cut(s)	747
BmrFI	CCNGG	3 cut(s)	346, 506, 636
BmsI	GCATC	1 cut(s)	750
BpiI	GAAGAC	1 cut(s)	799
BpuMI	CCSGG	1 cut(s)	346
Bsa29I	ATCGAT	1 cut(s)	335
BsaAI	YACGTR	3 cut(s)	304, 311, 322
BsaBI	GATNNNNATC	1 cut(s)	416
BsaHI	GRCGYC	1 cut(s)	668
BsaI	GGTCTC	1 cut(s)	268
BsaJI	CCNNGG	1 cut(s)	401
BsaWI	WCCGGW	2 cut(s)	455, 592
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 422
Bse118I	RCCGGY	1 cut(s)	272
Bse1I	ACTGG	2 cut(s)	652, 790
Bse3DI	GCAATG	1 cut(s)	648
Bse8I	GATNNNNATC	1 cut(s)	416
BseBI	CCWGG	2 cut(s)	506, 636
BseCI	ATCGAT	1 cut(s)	335
BseDI	CCNNGG	1 cut(s)	401
BseGI	GGATG	2 cut(s)	22, 240
BseJI	GATNNNNATC	1 cut(s)	416
BseLI	CCNNNNNNNGG	2 cut(s)	136, 422
BseMI	GCAATG	1 cut(s)	648
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	2 cut(s)	652, 790
BseRI	GAGGAG	2 cut(s)	368, 802
BseXI	GCAGC	2 cut(s)	593, 737
Bsh1285I	CGRYCG	1 cut(s)	170
BshFI	GGCC	2 cut(s)	326, 766
BshVI	ATCGAT	1 cut(s)	335
BsiEI	CGRYCG	1 cut(s)	170
BsiHKAI	GWGCWC	1 cut(s)	574
BsiSI	CCGG	7 cut(s)	273, 285, 327, 345, 423, 456, 593
BslFI	GGGAC	1 cut(s)	361
BslI	CCNNNNNNNGG	2 cut(s)	136, 422
BsmAI	GTCTC	3 cut(s)	268, 506, 594
BsmBI	CGTCTC	1 cut(s)	506
BsmFI	GGGAC	1 cut(s)	361
BsnI	GGCC	2 cut(s)	326, 766
Bso31I	GGTCTC	1 cut(s)	268
Bsp1286I	GDGCHC	1 cut(s)	574
Bsp143I	GATC	8 cut(s)	4, 45, 167, 237, 336, 411, 579, 624
BspACI	CCGC	4 cut(s)	77, 80, 104, 663
BspANI	GGCC	2 cut(s)	326, 766
BspCNI	CTCAG	1 cut(s)	242
BspDI	ATCGAT	1 cut(s)	335
BspHI	TCATGA	1 cut(s)	705
BspPI	GGATC	4 cut(s)	12, 245, 331, 406
BspTNI	GGTCTC	1 cut(s)	268
BsrDI	GCAATG	1 cut(s)	648
BsrFI	RCCGGY	1 cut(s)	272
BsrI	ACTGG	2 cut(s)	652, 790
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	1 cut(s)	401
BssMI	GATC	8 cut(s)	4, 45, 167, 237, 336, 411, 579, 624
BssNI	GRCGYC	1 cut(s)	668
BssSI	CACGAG	1 cut(s)	86
Bst2BI	CACGAG	1 cut(s)	86
Bst2UI	CCWGG	2 cut(s)	506, 636
Bst4CI	ACNGT	3 cut(s)	451, 616, 733
Bst6I	CTCTTC	2 cut(s)	260, 560
BstACI	GRCGYC	1 cut(s)	668
BstBAI	YACGTR	3 cut(s)	304, 311, 322
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	2 cut(s)	229, 814
BstF5I	GGATG	2 cut(s)	22, 240
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	2 cut(s)	85, 641
BstKTI	GATC	8 cut(s)	7, 48, 170, 240, 339, 414, 582, 627
BstMAI	GTCTC	3 cut(s)	268, 506, 594
BstMBI	GATC	8 cut(s)	4, 45, 167, 237, 336, 411, 579, 624
BstMCI	CGRYCG	1 cut(s)	170
BstMWI	GCNNNNNNNGC	1 cut(s)	530
BstNI	CCWGG	2 cut(s)	506, 636
BstSCI	CCNGG	3 cut(s)	344, 504, 634
BstV1I	GCAGC	2 cut(s)	593, 737
BstV2I	GAAGAC	1 cut(s)	799
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
Bsu15I	ATCGAT	1 cut(s)	335
BsuRI	GGCC	2 cut(s)	326, 766
BsuTUI	ATCGAT	1 cut(s)	335
BtrI	CACGTC	1 cut(s)	747
BtsCI	GGATG	2 cut(s)	22, 240
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	1 cut(s)	75
CciI	TCATGA	1 cut(s)	705
CfoI	GCGC	2 cut(s)	85, 641
Cfr10I	RCCGGY	1 cut(s)	272
ClaI	ATCGAT	1 cut(s)	335
CseI	GACGC	1 cut(s)	657
CsiI	ACCWGGT	1 cut(s)	504
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	6 cut(s)	259, 445, 466, 706, 712, 803
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	2 cut(s)	229, 814
DpnI	GATC	8 cut(s)	6, 47, 169, 239, 338, 413, 581, 626
DpnII	GATC	8 cut(s)	4, 45, 167, 237, 336, 411, 579, 624
EaeI	YGGCCR	2 cut(s)	324, 764
Eam1104I	CTCTTC	2 cut(s)	260, 560
EarI	CTCTTC	2 cut(s)	260, 560
Eco31I	GGTCTC	1 cut(s)	268
Eco57I	CTGAAG	2 cut(s)	188, 677
Eco72I	CACGTG	2 cut(s)	304, 311
EcoRII	CCWGG	2 cut(s)	504, 634
Esp3I	CGTCTC	1 cut(s)	506
FaeI	CATG	6 cut(s)	262, 448, 469, 709, 715, 806
FaqI	GGGAC	1 cut(s)	361
FatI	CATG	6 cut(s)	258, 444, 465, 705, 711, 802
FauI	CCCGC	1 cut(s)	656
FblI	GTMKAC	1 cut(s)	749
Fnu4HI	GCNGC	4 cut(s)	78, 81, 607, 726
FokI	GGATG	2 cut(s)	29, 227
Fsp4HI	GCNGC	4 cut(s)	78, 81, 607, 726
FspBI	CTAG	3 cut(s)	527, 575, 677
GlaI	GCGC	2 cut(s)	84, 640
GluI	GCNGC	4 cut(s)	78, 81, 607, 726
HaeII	RGCGCY	1 cut(s)	86
HaeIII	GGCC	2 cut(s)	326, 766
HapII	CCGG	7 cut(s)	273, 285, 327, 345, 423, 456, 593
HgaI	GACGC	1 cut(s)	657
HhaI	GCGC	2 cut(s)	85, 641
Hin1I	GRCGYC	1 cut(s)	668
Hin1II	CATG	6 cut(s)	262, 448, 469, 709, 715, 806
Hin6I	GCGC	2 cut(s)	83, 639
HinP1I	GCGC	2 cut(s)	83, 639
HindIII	AAGCTT	1 cut(s)	783
HinfI	GANTC	1 cut(s)	109
HpaII	CCGG	7 cut(s)	273, 285, 327, 345, 423, 456, 593
HphI	GGTGA	4 cut(s)	79, 118, 445, 574
Hpy166II	GTNNAC	1 cut(s)	750
Hpy188I	TCNGA	7 cut(s)	9, 57, 194, 402, 437, 696, 817
Hpy188III	TCNNGA	4 cut(s)	165, 479, 677, 706
Hpy8I	GTNNAC	1 cut(s)	750
Hpy99I	CGWCG	2 cut(s)	553, 673
HpyAV	CCTTC	1 cut(s)	134
HpyCH4III	ACNGT	3 cut(s)	451, 616, 733
HpyCH4IV	ACGT	7 cut(s)	292, 303, 310, 321, 384, 551, 746
HpyCH4V	TGCA	3 cut(s)	496, 556, 609
HpyF10VI	GCNNNNNNNGC	1 cut(s)	530
HpyF3I	CTNAG	2 cut(s)	229, 814
HpySE526I	ACGT	7 cut(s)	292, 303, 310, 321, 384, 551, 746
Hsp92I	GRCGYC	1 cut(s)	668
Hsp92II	CATG	6 cut(s)	262, 448, 469, 709, 715, 806
HspAI	GCGC	2 cut(s)	83, 639
Kzo9I	GATC	8 cut(s)	4, 45, 167, 237, 336, 411, 579, 624
LmnI	GCTCC	2 cut(s)	530, 722
Lsp1109I	GCAGC	2 cut(s)	593, 737
LweI	GCATC	1 cut(s)	750
MabI	ACCWGGT	1 cut(s)	504
MaeI	CTAG	3 cut(s)	527, 575, 677
MaeII	ACGT	7 cut(s)	292, 303, 310, 321, 384, 551, 746
MaeIII	GTNAC	4 cut(s)	275, 451, 460, 792
MalI	GATC	8 cut(s)	6, 47, 169, 239, 338, 413, 581, 626
MboI	GATC	8 cut(s)	4, 45, 167, 237, 336, 411, 579, 624
MboII	GAAGA	6 cut(s)	167, 194, 247, 577, 766, 799
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	574
MlsI	TGGCCA	1 cut(s)	766
MluCI	AATT	1 cut(s)	354
MluNI	TGGCCA	1 cut(s)	766
MmeI	TCCRAC	2 cut(s)	415, 598
MnlI	CCTC	5 cut(s)	291, 386, 389, 396, 684
Mox20I	TGGCCA	1 cut(s)	766
MroXI	GAANNNNTTC	1 cut(s)	684
MscI	TGGCCA	1 cut(s)	766
MseI	TTAA	1 cut(s)	216
MslI	CAYNNNNRTG	2 cut(s)	491, 710
Msp20I	TGGCCA	1 cut(s)	766
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	7 cut(s)	273, 285, 327, 345, 423, 456, 593
MspR9I	CCNGG	3 cut(s)	346, 506, 636
MvaI	CCWGG	2 cut(s)	506, 636
MwoI	GCNNNNNNNGC	1 cut(s)	530
NciI	CCSGG	1 cut(s)	346
NdeII	GATC	8 cut(s)	4, 45, 167, 237, 336, 411, 579, 624
NlaIII	CATG	6 cut(s)	262, 448, 469, 709, 715, 806
NmuCI	GTSAC	1 cut(s)	451
PagI	TCATGA	1 cut(s)	705
PdmI	GAANNNNTTC	1 cut(s)	684
PfeI	GAWTC	1 cut(s)	109
PkrI	GCNGC	4 cut(s)	79, 82, 608, 727
Ple19I	CGATCG	1 cut(s)	170
PmaCI	CACGTG	2 cut(s)	304, 311
PmlI	CACGTG	2 cut(s)	304, 311
Ppu21I	YACGTR	3 cut(s)	304, 311, 322
Psp6I	CCWGG	2 cut(s)	504, 634
PspCI	CACGTG	2 cut(s)	304, 311
PspGI	CCWGG	2 cut(s)	504, 634
PsuI	RGATCY	1 cut(s)	4
PvuI	CGATCG	1 cut(s)	170
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
RseI	CAYNNNNRTG	2 cut(s)	491, 710
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	4 cut(s)	78, 81, 607, 726
Sau3AI	GATC	8 cut(s)	4, 45, 167, 237, 336, 411, 579, 624
ScrFI	CCNGG	3 cut(s)	346, 506, 636
SduI	GDGCHC	1 cut(s)	574
SexAI	ACCWGGT	1 cut(s)	504
SfaNI	GCATC	1 cut(s)	750
SmiMI	CAYNNNNRTG	2 cut(s)	491, 710
SpeI	ACTAGT	1 cut(s)	574
Sse9I	AATT	1 cut(s)	354
SsiI	CCGC	4 cut(s)	77, 80, 104, 663
SspMI	CTAG	3 cut(s)	527, 575, 677
StyD4I	CCNGG	3 cut(s)	344, 504, 634
TaaI	ACNGT	3 cut(s)	451, 616, 733
TaiI	ACGT	7 cut(s)	295, 306, 313, 324, 387, 554, 749
TaqI	TCGA	2 cut(s)	335, 478
TasI	AATT	1 cut(s)	354
TauI	GCSGC	2 cut(s)	80, 83
TfiI	GAWTC	1 cut(s)	109
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	1 cut(s)	286
TseFI	GTSAC	1 cut(s)	451
TseI	GCWGC	2 cut(s)	606, 725
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	5 cut(s)	105, 199, 247, 482, 722
TspRI	CASTG	1 cut(s)	286
XbaI	TCTAGA	1 cut(s)	676
XmiI	GTMKAC	1 cut(s)	749
XmnI	GAANNNNTTC	1 cut(s)	684
XspI	CTAG	3 cut(s)	527, 575, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.