Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0021722

Physical Location & Seq

Genomic Coordinates Forward (+)

53062838 .. 53076487

Gene Structure 13650 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00120710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGTGGTGTTCGATATTGGAGAGCTGCGAGGCTTGGAGATCATAACCATCGGTTCGGTTGATGATCGAGAGGTCGATGGTCTTCGAGGAACAGTAGCTCTTCGGATTGAAGGGAGCGTGTGGAGGCTGAAGTTGATGCAAGGCTGTGTTGAGCTTAGGTCTTGCTCGGAATTGGAAGCTAGTTCACACAACGGTGGAGGTGGCAAGAAGAGGTGGCCGGAGACCATGATCTCCATTGGCGGAGAACAAGCGAGAGGGGAAGACCTTTCCCTCCTTCATATTCCACTGGATAGAAACATAACACCAATGATCTTCTACCACTCATCCACAACGACGATGATTCGAACTGCGAATCCGAGTGAGACCGAAGCAACGACGATGCAACAATTTCAAGATCTCCACGGACAAAGAACCCGACCCGTATGCTCGCGACGAAGACGACGACTCCTCCACCCTCCCTTTACTCCTCAAACGCCTCCCAAGGACTTCGGCGGTGGCACCTCCCTCAACTACTTCAAGGACAACGACGGTGATTTCTGCTCCGTGATCGTCAAGAGCGACCGCAATCGGACCACAAGGAGGTTGCGTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006928 GO:0006950 GO:0006996 GO:0007010 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007266 GO:0007346 GO:0008150 GO:0008152 GO:0008219 GO:0008283 GO:0009893 GO:0009966 GO:0009987 GO:0010562 GO:0010604 GO:0010646 GO:0012501 GO:0016043 GO:0016301 GO:0016310 GO:0016477 GO:0016740 GO:0016772 GO:0016773 GO:0017016 GO:0017048 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0023014 GO:0023051 GO:0023052 GO:0030029 GO:0030036 GO:0031098 GO:0031267 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0040011 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043408 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048365 GO:0048518 GO:0048522 GO:0048583 GO:0048870 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051020 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051674 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

197

Amino Acids

22.17

Weight (kDa)

8.8

Isoelectric Point (pI)

59.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021722)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_2G00120710 Rroxscaffold_3G00231630 Rroxscaffold_3G00250180 Rroxscaffold_4G00284420
rosa_samantha	Rh4AG035800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	497
AccII	CGCG	1 cut(s)	430
AciI	CCGC	3 cut(s)	240, 492, 562
AcoI	YGGCCR	1 cut(s)	215
AcuI	CTGAAG	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	579
AgsI	TTSAA	3 cut(s)	110, 392, 517
AleI	CACNNNNGTG	1 cut(s)	192
AloI	GAACNNNNNNTCC	2 cut(s)	337, 369
AluBI	AGCT	4 cut(s)	25, 98, 154, 179
AluI	AGCT	4 cut(s)	25, 98, 154, 179
Alw26I	GTCTC	2 cut(s)	215, 356
AoxI	GGCC	1 cut(s)	215
ApeKI	GCWGC	1 cut(s)	25
AspS9I	GGNCC	1 cut(s)	570
AsuHPI	GGTGA	1 cut(s)	542
AsuII	TTCGAA	1 cut(s)	343
AvaII	GGWCC	1 cut(s)	570
BanI	GGYRCC	1 cut(s)	497
BbsI	GAAGAC	3 cut(s)	74, 267, 442
BbvI	GCAGC	1 cut(s)	12
BccI	CCATC	2 cut(s)	56, 71
BcgI	CGANNNNNNTGC	2 cut(s)	405, 439
BcoDI	GTCTC	2 cut(s)	215, 356
BfaI	CTAG	2 cut(s)	180, 592
BglII	AGATCT	1 cut(s)	394
BisI	GCNGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	27
Bme18I	GGWCC	1 cut(s)	570
BmgT120I	GGNCC	1 cut(s)	570
BmiI	GGNNCC	1 cut(s)	499
BmsI	GCATC	2 cut(s)	126, 369
BpiI	GAAGAC	3 cut(s)	74, 267, 442
Bpu10I	CCTNAGC	1 cut(s)	155
Bpu14I	TTCGAA	1 cut(s)	343
BsaI	GGTCTC	2 cut(s)	215, 356
BsaJI	CCNNGG	2 cut(s)	400, 480
BsaXI	ACNNNNNCTCC	5 cut(s)	429, 432, 459, 462, 571
Bsc4I	CCNNNNNNNGG	1 cut(s)	579
Bse1I	ACTGG	1 cut(s)	291
BseDI	CCNNGG	2 cut(s)	400, 480
BseGI	GGATG	1 cut(s)	323
BseLI	CCNNNNNNNGG	1 cut(s)	579
BseNI	ACTGG	1 cut(s)	291
BseRI	GAGGAG	2 cut(s)	437, 456
BseXI	GCAGC	1 cut(s)	12
Bsh1236I	CGCG	1 cut(s)	430
Bsh1285I	CGRYCG	1 cut(s)	562
BshFI	GGCC	1 cut(s)	217
BshNI	GGYRCC	1 cut(s)	497
BsiEI	CGRYCG	1 cut(s)	562
BsiSI	CCGG	1 cut(s)	218
BslI	CCNNNNNNNGG	1 cut(s)	579
BsmAI	GTCTC	2 cut(s)	215, 356
BsnI	GGCC	1 cut(s)	217
Bso31I	GGTCTC	2 cut(s)	215, 356
Bsp119I	TTCGAA	1 cut(s)	343
Bsp143I	GATC	6 cut(s)	39, 64, 228, 309, 394, 546
Bsp68I	TCGCGA	1 cut(s)	430
BspACI	CCGC	3 cut(s)	240, 492, 562
BspANI	GGCC	1 cut(s)	217
BspFNI	CGCG	1 cut(s)	430
BspLI	GGNNCC	1 cut(s)	499
BspQI	GCTCTTC	1 cut(s)	105
BspT104I	TTCGAA	1 cut(s)	343
BspT107I	GGYRCC	1 cut(s)	497
BspTNI	GGTCTC	2 cut(s)	215, 356
BsrI	ACTGG	1 cut(s)	291
BssECI	CCNNGG	2 cut(s)	400, 480
BssMI	GATC	6 cut(s)	39, 64, 228, 309, 394, 546
BssT1I	CCWWGG	1 cut(s)	480
Bst4CI	ACNGT	3 cut(s)	94, 194, 530
Bst6I	CTCTTC	2 cut(s)	105, 203
BstBI	TTCGAA	1 cut(s)	343
BstC8I	GCNNGC	1 cut(s)	428
BstDEI	CTNAG	1 cut(s)	155
BstDSI	CCRYGG	1 cut(s)	400
BstF5I	GGATG	1 cut(s)	323
BstFNI	CGCG	1 cut(s)	430
BstKTI	GATC	6 cut(s)	42, 67, 231, 312, 397, 549
BstMAI	GTCTC	2 cut(s)	215, 356
BstMBI	GATC	6 cut(s)	39, 64, 228, 309, 394, 546
BstMCI	CGRYCG	1 cut(s)	562
BstUI	CGCG	1 cut(s)	430
BstV1I	GCAGC	1 cut(s)	12
BstV2I	GAAGAC	3 cut(s)	74, 267, 442
BstX2I	RGATCY	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	394
BsuRI	GGCC	1 cut(s)	217
BtgI	CCRYGG	1 cut(s)	400
BtsCI	GGATG	1 cut(s)	323
BtsIMutI	CAGTG	1 cut(s)	284
BtuMI	TCGCGA	1 cut(s)	430
Cac8I	GCNNGC	1 cut(s)	428
Cfr13I	GGNCC	1 cut(s)	570
CviAII	CATG	1 cut(s)	226
CviJI	RGCY	8 cut(s)	25, 33, 98, 127, 144, 154, 179, 217
CviKI_1	RGCY	8 cut(s)	25, 33, 98, 127, 144, 154, 179, 217
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	6 cut(s)	41, 66, 230, 311, 396, 548
DpnII	GATC	6 cut(s)	39, 64, 228, 309, 394, 546
EaeI	YGGCCR	1 cut(s)	215
Eam1104I	CTCTTC	2 cut(s)	105, 203
EarI	CTCTTC	2 cut(s)	105, 203
EciI	GGCGGA	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	480
Eco31I	GGTCTC	2 cut(s)	215, 356
Eco47I	GGWCC	1 cut(s)	570
Eco57I	CTGAAG	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	480
ErhI	CCWWGG	1 cut(s)	480
FaeI	CATG	1 cut(s)	229
FaiI	YATR	5 cut(s)	44, 227, 279, 299, 424
FatI	CATG	1 cut(s)	225
Fnu4HI	GCNGC	1 cut(s)	26
FokI	GGATG	1 cut(s)	310
Fsp4HI	GCNGC	1 cut(s)	26
FspBI	CTAG	2 cut(s)	180, 592
GluI	GCNGC	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	217
HapII	CCGG	1 cut(s)	218
Hin1II	CATG	1 cut(s)	229
HinfI	GANTC	3 cut(s)	340, 352, 444
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	1 cut(s)	542
Hpy166II	GTNNAC	1 cut(s)	185
Hpy188I	TCNGA	4 cut(s)	105, 169, 357, 570
Hpy188III	TCNNGA	4 cut(s)	68, 392, 429, 553
Hpy8I	GTNNAC	1 cut(s)	185
Hpy99I	CGWCG	5 cut(s)	337, 379, 435, 444, 530
HpyAV	CCTTC	2 cut(s)	104, 284
HpyCH4III	ACNGT	3 cut(s)	94, 194, 530
HpyCH4V	TGCA	2 cut(s)	139, 382
HpyF3I	CTNAG	1 cut(s)	155
Hsp92II	CATG	1 cut(s)	229
Kzo9I	GATC	6 cut(s)	39, 64, 228, 309, 394, 546
LguI	GCTCTTC	1 cut(s)	105
LmnI	GCTCC	2 cut(s)	114, 545
LpnPI	CCDG	2 cut(s)	231, 272
Lsp1109I	GCAGC	1 cut(s)	12
LweI	GCATC	2 cut(s)	126, 369
MaeI	CTAG	2 cut(s)	180, 592
MaeIII	GTNAC	1 cut(s)	587
MalI	GATC	6 cut(s)	41, 66, 230, 311, 396, 548
MboI	GATC	6 cut(s)	39, 64, 228, 309, 394, 546
MboII	GAAGA	6 cut(s)	74, 92, 220, 272, 304, 447
MflI	RGATCY	1 cut(s)	394
MluCI	AATT	2 cut(s)	170, 386
MlyI	GAGTC	1 cut(s)	438
MslI	CAYNNNNRTG	1 cut(s)	192
MspI	CCGG	1 cut(s)	218
MvnI	CGCG	1 cut(s)	430
NdeII	GATC	6 cut(s)	39, 64, 228, 309, 394, 546
NlaIII	CATG	1 cut(s)	229
NlaIV	GGNNCC	1 cut(s)	499
NmuCI	GTSAC	1 cut(s)	587
NruI	TCGCGA	1 cut(s)	430
NspV	TTCGAA	1 cut(s)	343
OliI	CACNNNNGTG	1 cut(s)	192
PciSI	GCTCTTC	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	2 cut(s)	439, 555
PfeI	GAWTC	2 cut(s)	340, 352
PkrI	GCNGC	1 cut(s)	27
PleI	GAGTC	1 cut(s)	438
PpsI	GAGTC	1 cut(s)	438
PspN4I	GGNNCC	1 cut(s)	499
PspPI	GGNCC	1 cut(s)	570
PsuI	RGATCY	1 cut(s)	394
RruI	TCGCGA	1 cut(s)	430
RseI	CAYNNNNRTG	1 cut(s)	192
SapI	GCTCTTC	1 cut(s)	105
SatI	GCNGC	1 cut(s)	26
Sau3AI	GATC	6 cut(s)	39, 64, 228, 309, 394, 546
Sau96I	GGNCC	1 cut(s)	570
SchI	GAGTC	1 cut(s)	438
SfaNI	GCATC	2 cut(s)	126, 369
SfuI	TTCGAA	1 cut(s)	343
SinI	GGWCC	1 cut(s)	570
SmiMI	CAYNNNNRTG	1 cut(s)	192
Sse9I	AATT	2 cut(s)	170, 386
SsiI	CCGC	3 cut(s)	240, 492, 562
SspMI	CTAG	2 cut(s)	180, 592
StyI	CCWWGG	1 cut(s)	480
TaaI	ACNGT	3 cut(s)	94, 194, 530
TaqI	TCGA	5 cut(s)	12, 67, 75, 85, 343
TaqII	GACCGA	1 cut(s)	380
TasI	AATT	2 cut(s)	170, 386
TfiI	GAWTC	2 cut(s)	340, 352
TscAI	CASTG	1 cut(s)	291
TseFI	GTSAC	1 cut(s)	587
TseI	GCWGC	1 cut(s)	25
Tsp45I	GTSAC	1 cut(s)	587
TspDTI	ATGAA	1 cut(s)	266
TspGWI	ACGGA	2 cut(s)	417, 532
TspRI	CASTG	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	570
XspI	CTAG	2 cut(s)	180, 592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.